			Home About us Contact

Stem Structures (stem + structure)

Distribution by Scientific Domains

Life Sciences	80%

Selected Abstracts

Strong immunostimulatory activity of AT-oligodeoxynucleotide requires a six-base loop with a self-stabilized 5,-C,G-3, stem structure

CELLULAR MICROBIOLOGY, Issue 3 2006
Takeshi Shimosato
Summary Lactobacillus gasseri OLL2716 has recently been discovered as a probiotic that suppresses the growth of Helicobacter pylori and reduces gastric mucosal inflammation in humans. This has resulted in the development of a new type of probiotic yoghurt ,LG21' in Japan. In our previous study, we found an immunostimulatory AT5ACL oligodeoxynucleotide (AT-ODN) containing a unique core sequence (5,-ATTTTTAC-3,) in L. gasseri JCM1131T. Interestingly, although the AT-ODN does not contain any CpG sequences, it exerts mitogenic activity in B cells and augments Th-1-type immune responses via Toll-like receptor 9. These findings prompted us to identify strong immunostimulatory non-CpG AT-ODNs that contain the 5,-ATTTTTAC-3, motif in the genomic sequence of L. gasseri OLL2716. We identified 280 kinds of AT-ODNs in the L. gasseri OLL2716 genome. Mitogenicity and NF-,B gene reporting assays showed that 13 of the 280 AT-ODNs were strongly immunostimulatory when in the TLR9 transfectant. Of these, AT-ODNs LGAT-145 and LGAT-243 were the most potent. With respect to the induction of Th-1-type cytokines, LGAT-243 had the greatest activity and was more potent than the swine prototype, ODN D25. We further found that a six-base secondary loop structure containing a self-stabilized 5,-C,G-3, stem sequence is important for potent immunostimulatory activity. These results show for the first time that AT-ODNs with a specific loop and stem structure are important factors for immunostimulatory activity. Finally, we found that novel strong immunostimulatory non-CpG AT-ODNs exist in the genome of probiotic lactic acid bacteria. [source]

Properties of Human Mitochondrial Ribosomes

IUBMB LIFE, Issue 9 2003
Thomas W. O'Brien
Abstract Mammalian mitochondrial ribosomes (55S) differ unexpectedly from bacterial (70S) and cytoplasmic ribosomes (80S), as well as other kinds of mitochondrial ribosomes. Typical of mammalian mitochondrial ribosomes, the bovine mitochondrial ribosome has been developed as a model system for the study of human mitochondrial ribosomes, to address several questions related to the structure, function, biosynthesis and evolution of these interesting ribosomes. Bovine mitochondrial ribosomal proteins (MRPs) from each subunit have been identified and characterized with respect to individuality and electrophoretic properties, amino acid sequence, topographic disposition, RNA binding properties, evolutionary relationships and reaction with affinity probes of ribosomal functional domains. Several distinctive properties of these ribosomes are being elucidated, including their antibiotic susceptibility and composition. Human mitochondrial ribosomes lack several of the major RNA stem structures of bacterial ribosomes but they contain a correspondingly higher protein content (as many as 80 proteins), suggesting a model where proteins have replaced RNA structural elements during the evolution of these ribosomes. Despite their lower RNA content they are physically larger than bacterial ribosomes, because of the 'extra' proteins they contain. The extra proteins in mitochondrial ribosomes are 'new' in the sense that they are not homologous to proteins in bacterial or cytoplasmic ribosomes. Some of the new proteins appear to be bifunctional. All of the mammalian MRPs are encoded in nuclear genes (a separate set from those encoding cytoplasmic ribosomal proteins) which are evolving more rapidly than those encoding cytoplasmic ribosomal proteins. The MRPs are imported into mitochondria where they assemble coordinately with mitochondrially transcribed rRNAs into ribosomes that are responsible for translating the 13 mRNAs for essential proteins of the oxidative phosphorylation system. IUBMB Life, 55: 505-513, 2003 [source]

Pathophysiological concepts of restless legs syndrome

MOVEMENT DISORDERS, Issue 10 2007
Walter Paulus MD
Abstract Pathophysiological concepts of restless legs syndrome (RLS) are based mainly on neuroimaging and on neurophysiological data. Furthermore treatment effects contribute essentially to the present understanding of the disease, unless the genetic progress expected in the near future will clarify substantially open issues. The concept agreed on assumes a dysfunction of the dopaminergic system, possibly on the level of striatal and/or spinal dopamine receptors, and the A11 neuron group localized in the hypothalamus as an integrated part of the system. These neurons modulate spinal excitability, alterations of which in turn affect sensory processing predominantly of leg afferents in brain stem structures. Neurophysiologically excitability alterations can be measured by a variety of methods such as determination of pain thresholds, H-reflex testing, and quantitative sensory testing. © 2007 Movement Disorder Society [source]

Tomato spotted wilt virus in peanut tissue types and physiological effects related to disease incidence and severity,

PLANT PATHOLOGY, Issue 4 2005
D. Rowland
Three peanut cultivars, Georgia Green, NC-V11, and ANorden, were grown using production practices that encouraged the development of Tomato spotted wilt virus (TSWV). The progression of TSWV infection was examined through the season using enzyme-linked immunosorbent assay (ELISA) tests on different tissue types [roots, leaves, pegs (pod attachment stem structures) and pods] and the effect of TSWV infection on physiological functions was examined at three harvest dates. Plants were classed into three severity categories: (i) no TSWV symptoms or previous positive ELISA tests; (ii) less than 50% of leaf tissue exhibiting TSWV symptoms; and (iii) greater than 50% of leaf tissue affected. TSWV showed a slow rate of infection at the beginning of the season and a greater percentage of infection of the roots than in the leaves. Photosynthesis was reduced in virus-affected infected plants by an average of 30% at the mid-season harvest and 51% at the late season harvest compared with virus-free plants across all three cultivars. Leaf tissue with symptoms had lower photosynthetic rates than healthy leaves. There were small differences among cultivars, with cv. ANorden maintaining higher average photosynthetic levels than cv. Georgia Green and higher transpirational levels than cv. NC-V11. The ability to maintain high assimilation physiology in the presence of the virus may help cultivars withstand TSWV infection and maintain final yields. [source]