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Starch Grains (starch + grain)
Selected AbstractsRemoval of high-abundance proteins for nuclear subproteome studies in rice (Oryza sativa) endospermELECTROPHORESIS, Issue 3 2008Guosheng Li Abstract Endosperm is a highly specialized storage organ with three sets of genomes. It is one of the most economically important organs in plants. Endosperm development involves parental imprinting and endoreduplication. A thorough study of the endosperm proteome, particularly the nuclear proteome, may provide critical insight into the regulation of seed development. Unfortunately, endosperm is extremely rich in starch grains and protein bodies of different sizes, making proteome studies on nonstorage proteins, particularly the low-abundance proteins, very challenging. Here we have developed a chromatographic method to remove large starch grains and an electrophoresis method to recover low-abundance proteins, respectively. Using these methods, we have identified 468 proteins from the nuclear enriched fraction of rice endosperm, including transcription factors, histone modification proteins, kinetochore proteins, centromere/microtubule binding proteins, and transposon proteins. Among the 468 proteins, 208 (44%) are hypothetical proteins, indicating that the endosperm proteome is poorly explored. In addition, analyses of the MS/MS data using BioWorks 3.1 have identified 59 putative acetylated proteins and 40 putative methylated proteins. Our studies have developed a method to remove starch grains and recover low-abundance proteins, respectively. The methods should be applicable to other organisms. [source] Ultrastructural and Immunocytochemical Studies on Effects of Barley Yellow Dwarf Virus , Infection on Fusarium Head Blight, Caused by Fusarium graminearum, in Wheat PlantsJOURNAL OF PHYTOPATHOLOGY, Issue 1 2006Y. Liu Abstract The interactions between barley yellow dwarf virus (BYDV) and Fusarium head blight (FHB), caused by Fusarium graminearum, were studied in the two winter wheat cultivars (cvs.), Agent (susceptible to FHB) and Petrus (moderately resistant to FHB), using ultrastructural and immunocytochemical methods. Infections of wheat plants of both cvs. by BYDV increased susceptibility to FHB. BYDV infection caused numerous cytological changes in lemma tissue of both cvs. such as formation of vesicles in the cytoplasm, degradation of fine structures of chloroplasts of both cvs. and accumulation of large starch grains in the chloroplasts. Electron microscopical studies showed that the development of F. graminearum on spike surfaces was not affected in BYDV-infected plants. After penetration and intercellular growth in lemma tissue, defence responses to Fusarium infections were markedly reduced in BYDV-diseased plants compared to the tissue of virus-free plants. At sites of contact of fungal cells with host tissue, depositions of cell wall material were distinctly less pronounced than in tissues of virus-free plants of cv. Petrus. Detection of , -1,3-glucanases and chitinases in lemma tissue of cv. Agent revealed no appreciably increased accumulation of both defence enzymes in F. graminearum -infected virus-free and BYDV-infected tissues compared to the non-infected control tissue. On the other hand, in cv. Petrus, infection with F. graminearum induced a markedly enhanced activity of both enzymes 3 days after inoculation. The increase of both enzyme activities was less pronounced in BYDV-infected plants than in tissue exclusively infected with F. graminearum. Cytological studies suggest that in contrast to the susceptible cv. Agent postinfectional defence responses may play still an important role in the resistance of the moderately resistant cv. Petrus to FHB. [source] Characterization of shapes for use in classification of starch grains imagesMICROSCOPY RESEARCH AND TECHNIQUE, Issue 9 2008Chong-Sze Tong Abstract As tradition Chinese herbal medicine becomes increasingly popular, there is an urgent need for efficient and accurate methods for the authentication of the Chinese Materia Medica (CMM) used in the herbal medicine. In this work, we present a denoising filter and introduce the use of chord length distribution (CLD) for the classification of starch grains in microscopic images of Chinese Materia Medica. Our simple denoising filter is adaptive to the background and is shown to be effective to remove noise, which appears in CMM microscopic starch grains images. The CLD is extracted by considering the frequency of the chord length in the binarized starch grains image, and we shall show that the CLD is an efficient and effective characterization of the starch grains. Experimental results on 240 starch grains images of 24 classes show that our method outperforms benchmark result using the current state-of-the-art method based on circular size distribution extracted by morphological operators at much higher computational cost. cost. Microsc. Res. Tech., 2008. © 2008 Wiley-Liss, Inc. [source] The Pulvinus Endodermal Cells and their Relation to Leaf Movement in Legumes of the Brazilian Cerrado,PLANT BIOLOGY, Issue 4 2007T. M. Rodrigues Abstract: Legume pulvini have a clearly delimited endodermis, whose variable content has been associated with the velocity and type of leaf movement: pulvini in leaves with fast nastic movement contain starch grains; pulvini in leaves with slow nastic movements have calcium oxalate crystals as well as starch grains in the endodermis. However, the studies carried out to date have involved few legume species. This study therefore purported to examine the consistency of this hypothesis in other legumes. Thus, the structure and content of the pulvinus endodermal cells of nine legumes of the Brazilian cerrado, with different types and velocities of leaf movement, were investigated: slow nyctinastic and heliotropic movements (Bauhinia rufa, Copaifera langsdorffii, Senna rugosa - Caesalpinioideae; Andira humilis and Dalbergia miscolobium - Faboideae; Stryphnodendron polyphyllum - Mimosoideae), slow heliotropic movement (Zornia diphylla - Faboideae), and fast seismonastic and slow nyctinastic and heliotropic movements (Mimosa rixosa and Mimosa flexuosa - Mimosoideae). Samples were prepared following standard plant anatomy and ultrastructure techniques. The endodermis of all the species contains starch grains. In the species displaying only slow movements, calcium oxalate prismatic crystals were observed in addition to starch grains, except in Zornia diphylla. In conclusion, oxalate crystals occur only in endodermal cells of pulvini that display slow movements, while starch grains are always present in pulvinus endodermal cells of plants with any kind of movement. [source] Food uptake in the mixotrophic Dinophysis acuminataTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 2 2005LUCIE MARANDA Evidence of food uptake in the photosynthetic genus Dinophysis comes solely from the presence of food vacuoles, as no photosynthetic cells have ever been observed in the act of feeding. We examined the feeding ecology of D. acuminata in natural populations and under laboratory conditions. Using depth-integrated sampling of the water column, we determined the frequency of food vacuolated cells at 2-h intervals over a 24-h period in a shallow marine embayment. Food vacuoles in preserved cells were enumerated using Nomarski differential interference contrast microscopy; ultrastructural characters were recorded by transmission electron microscopy. A peak in the feeding activity was observed toward dusk for an abundant June population, with 26% of cells with at least one food vacuole. Mechanisms of concurrent carbon acquisition were evident from the presence of chloroplasts with starch grains and food vacuoles within the same cell. Vacuole content could not be identified. In a preliminary 2-wk long simulated grazing experiment, a mixture of two hypothesized preys, Rhodomonas salina and Dunaliella tertiolecta, was offered to D. acuminata; the Dinophysis populations decreased steadily and at the same rate, whether food was present or not. The evaluation of the food vacuole frequency will be repeated in the coming season to verify the observed pattern, while grazing experiments will include a variety of food items and incubation conditions. Our current inability to successfully culture any photosynthetic Dinophysis limits ecophysiological approaches, either at the population or cellular level, to manipulation of field samples. Supported by National Institutes of Health Grant GM62126-01A1. [source] | ||||||||||