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Species Differentiation (species + differentiation)
Selected AbstractsThe Prevotella intermedia group organisms in young children and their mothers as related to maternal periodontal statusJOURNAL OF PERIODONTAL RESEARCH, Issue 6 2000Eija Könönen Currently, the Prevotella intermedia group includes three biochemically and phylogenetically related species: Prevotella intermedia, Prevotella nigrescens, and the newly described Prevotella pallens. The two first-named species are mentioned with varying emphasis in connection with periodontal diseases, while such a connection of P. pallens is not known. Mothers serve as a plausible source of bacteria to their children, and conceivably, a mother with periodontitis as a recurrent reservoir of periodontally infecting organisms. In the present study, 23 mothers and their young children were examined for the presence of the P. intermedia group organisms in relation to maternal periodontal status (I: periodontal health, II: initial periodontitis, and III: advanced periodontitis). Species differentiation was based on established biochemical methods, electrophoretic mobility patterns, SDS-PAGE, and DNA hybridization. P. intermedia was not recovered from children but nearly exclusively from mothers in group III, thus confirming its association with periodontitis. P. nigrescens and P. pallens were frequently found in mothers and children. To determine bacterial transmission between a mother and her child, 72 isolates from 13 mother,child pairs were analyzed by arbitrarily primed PCR (AP-PCR). Similar AP-PCR types of P. nigrescens and/or P. pallens were recovered from 3/4 pairs in group I, 2/5 pairs in group II, and none in group III. Our results indicate that different species within the P. intermedia group have a different colonization pattern in childhood and that the periodontal status reflects qualitatively their presence in maternal saliva. Intra-familial transmission of P. nigrescens and P. pallens can occur in early childhood, however similar AP-PCR types were most obvious within periodontally healthy mother,child pairs. [source] Genetic divergence and ecological specialisation of seed weevils (Exapion spp.) on gorses (Ulex spp.)ECOLOGICAL ENTOMOLOGY, Issue 3 2008MYRIAM BARAT Abstract 1.,Reproductive isolation of sympatric populations may result from divergent selection of populations in different environments, and lead to ecological specialisation. In Brittany (France), the gorse Ulex europaeus (Fabaceae, Genisteae), may be encountered in sympatry with one of the two other gorse species present: U. gallii and U. minor. A recent study based on morphological identification of seed predators of gorse has shown that two weevil species (Curculionoidea, Apionidae) infest gorse pods at different seasons and have different host ranges: Exapion ulicis infests U. europaeus in spring, whereas E. lemovicinum infests U. gallii and U. minor in autumn. Weevil populations may thus have diverged in sympatry. 2.,As morphological identification of weevils is often difficult and some of the characters used may exhibit individual or environmental variation, mitochondrial and nuclear sequences of weevils collected within pods of the three gorse species in 10 populations of Brittany were used to reconstruct their phylogeny. 3.,The results reveal that species differentiation based on morphological characters is confirmed by the two molecular data sets, showing that E. ulicis and E. lemovicinum are distinct species, and suggesting the absence of host races. Finally, E. ulicis was able to use U. gallii and U. minor pods in spring in some years in some populations, which appeared to depend on the availability of pods present during its reproductive period. 4.,Divergence between E. ulicis and E. lemovicinum may have resulted from temporal isolation of reproductive periods of weevil populations followed by specialisation of insects to host phenology. [source] ESTIMATING A GEOGRAPHICALLY EXPLICIT MODEL OF POPULATION DIVERGENCEEVOLUTION, Issue 3 2007L. Lacey Knowles Patterns of genetic variation can provide valuable insights for deciphering the relative roles of different evolutionary processes in species differentiation. However, population-genetic models for studying divergence in geographically structured species are generally lacking. Since these are the biogeographic settings where genetic drift is expected to predominate, not only are population-genetic tests of hypotheses in geographically structured species constrained, but generalizations about the evolutionary processes that promote species divergence may also be potentially biased. Here we estimate a population-divergence model in montane grasshoppers from the sky islands of the Rocky Mountains. Because this region was directly impacted by Pleistocene glaciation, both the displacement into glacial refugia and recolonization of montane habitats may contribute to differentiation. Building on the tradition of using information from the genealogical relationships of alleles to infer the geography of divergence, here the additional consideration of the process of gene-lineage sorting is used to obtain a quantitative estimate of population relationships and historical associations (i.e., a population tree) from the gene trees of five anonymous nuclear loci and one mitochondrial locus in the broadly distributed species Melanoplus oregonensis. Three different approaches are used to estimate a model of population divergence; this comparison allows us to evaluate specific methodological assumptions that influence the estimated history of divergence. A model of population divergence was identified that significantly fits the data better compared to the other approaches, based on per-site likelihood scores of the multiple loci, and that provides clues about how divergence proceeded in M. oregonensis during the dynamic Pleistocene. Unlike the approaches that either considered only the most recent coalescence (i.e., information from a single individual per population) or did not consider the pattern of coalescence in the gene genealogies, the population-divergence model that best fits the data was estimated by considering the pattern of gene lineage coalescence across multiple individuals, as well as loci. These results indicate that sampling of multiple individuals per population is critical to obtaining an accurate estimate of the history of divergence so that the signal of common ancestry can be separated from the confounding influence of gene flow,even though estimates suggest that gene flow is not a predominant factor structuring patterns of genetic variation across these sky island populations. They also suggest that the gene genealogies contain information about population relationships, despite the lack of complete sorting of gene lineages. What emerges from the analyses is a model of population divergence that incorporates both contemporary distributions and historical associations, and shows a latitudinal and regional structuring of populations reminiscent of population displacements into multiple glacial refugia. Because the population-divergence model itself is built upon the specific events shaping the history of M. oregonensis, it provides a framework for estimating additional population-genetic parameters relevant to understanding the processes governing differentiation in geographically structured species and avoids the problems of relying on overly simplified and inaccurate divergence models. The utility of these approaches, as well as the caveats and future improvements, for estimating population relationships and historical associations relevant to genetic analyses of geographically structured species are discussed. [source] A geometric morphometric study of regional differences in the ontogeny of the modern human facial skeleton,JOURNAL OF ANATOMY, Issue 3 2002Una Strand Viðarsdóttir Abstract This study examines interpopulation variations in the facial skeleton of 10 modern human populations and places these in an ontogenetic perspective. It aims to establish the extent to which the distinctive features of adult representatives of these populations are present in the early post natal period and to what extent population differences in ontogenetic scaling and allometric trajectories contribute to distinct facial forms. The analyses utilize configurations of facial landmarks and are carried out using geometric morphometric methods. The results of this study show that modern human populations can be distinguished based on facial shape alone, irrespective of age or sex, indicating the early presence of differences. Additionally, some populations have statistically distinct facial ontogenetic trajectories that lead to the development of further differences later in ontogeny. We conclude that population-specific facial morphologies develop principally through distinctions in facial shape probably already present at birth and further accentuated and modified to variable degrees during growth. These findings raise interesting questions regarding the plasticity of facial growth patterns in modern humans. Further, they have important implications in relation to the study of growth in the face of fossil hominins and in relation to the possibility of developing effective discriminant functions for the identification of population affinities of immature facial skeletal material. Such tools would be of value in archaeological, forensic and anthropological applications. The findings of this study underline the need to examine more deeply, and in more detail, the ontogenetic basis of other causes of craniometric variation, such as sexual dimorphism and hominin species differentiation. [source] New perspectives on the origin and diversification of Africa's forest avifaunaAFRICAN JOURNAL OF ECOLOGY, Issue 3 2008Jon Fjeldså Abstract The use of DNA sequence data in systematic studies has brought about a revolution in our understanding of avian relationships and when combined with digitized distributional data, has facilitated new interpretations about the origins of diverse clades of the African avifauna including its diversification up through the Tertiary until the present. Here we review recent studies with special reference to Africa's forest avifauna and specifically comment on the putative origins of ,hotspots' of endemism in the Eastern Arc Mountains of Tanzania and in the Cape Region of South Africa. Intriguingly, both these areas appear to have retained populations of relict taxa since the mid-tertiary thermal optimum and at the same time have been centres of recent species differentiation. Résumé L'utilisation des données portant sur la séquence ADN dans les études systématiques représente une révolution dans notre façon de comprendre les relations entre les oiseaux et, combinée avec les données numérisées sur la distribution, elle facilite de nouvelles interprétations concernant les origines de différents clades de l'avifaune africaine, y compris sa diversification tout au long du Tertiaire et jusqu'à nos jours. Nous passons ici en revue des études récentes qui se réfèrent particulièrement à l'avifaune forestière africaine, avec un commentaire spécial sur les origines putatives des hauts lieux d'endémisme dans les montagnes de l'Eastern Arc tanzanien et dans la région du Cap, en Afrique du Sud. Curieusement, ces deux endroits semblent avoir conservé des populations de taxons résiduels depuis l'optimum thermique du milieu du Tertiaire, tout en étant aussi au centre de récentes différenciations entre espèces. [source] The genic view of the process of speciationJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 6 2001Chung-I Wu The unit of adaptation is usually thought to be a gene or set of interacting genes, rather than the whole genome, and this may be true of species differentiation. Defining species on the basis of reproductive isolation (RI), on the other hand, is a concept best applied to the entire genome. The biological species concept (BSC; Mayr, 1963) stresses the isolation aspect of speciation on the basis of two fundamental genetic assumptions , the number of loci underlying species differentiation is large and the whole genome behaves as a cohesive, or coadapted genetic unit. Under these tenets, the exchange of any part of the genomes between diverging groups is thought to destroy their integrity. Hence, the maintenance of each species' genome cohesiveness by isolating mechanisms has become the central concept of species. In contrast, the Darwinian view of speciation is about differential adaptation to different natural or sexual environments. RI is viewed as an important by product of differential adaptation and complete RI across the whole genome need not be considered as the most central criterion of speciation. The emphasis on natural and sexual selection thus makes the Darwinian view compatible with the modern genic concept of evolution. Genetic and molecular analyses of speciation in the last decade have yielded surprisingly strong support for the neo-Darwinian view of extensive genetic differentiation and epistasis during speciation. However, the extent falls short of what BSC requires in order to achieve whole-genome ,cohesiveness'. Empirical observations suggest that the gene is the unit of species differentiation. Significantly, the genetic architecture underlying RI, the patterns of species hybridization and the molecular signature of speciation genes all appear to support the view that RI is one of the manifestations of differential adaptation, as Darwin (1859, Chap. 8) suggested. The nature of this adaptation may be as much the result of sexual selection as natural selection. In the light of studies since its early days, BSC may now need a major revision by shifting the emphasis from isolation at the level of whole genome to differential adaptation at the genic level. With this revision, BSC would in fact be close to Darwin's original concept of speciation. [source] Mapping tree species in temperate deciduous woodland using time-series multi-spectral dataAPPLIED VEGETATION SCIENCE, Issue 1 2010R. A. Hill Abstract Questions: What is the optimum combination of image dates across a growing season for tree species differentiation in multi-spectral data and how does species composition affect overstorey canopy density? Location: Monks Wood, Cambridgeshire, eastern England, UK. Methods: Six overstorey tree species were mapped using five Airborne Thematic Mapper images acquired across the 2003 growing season (17 March, 30 May, 16 July, 23 September, 27 October). After image pre-processing, supervised maximum likelihood classification was performed on the images and on all two-, three-, four- and five-date combinations. Relationships between tree species composition and canopy density were assessed using regression analyses. Results: The image with the greatest tree species discrimination was acquired on 27/10 when the overstorey species were in different stages of leaf tinting and fall. In this image, tree species were mapped with an overall classification accuracy (OCA) of 71% (kappa 0.63). A similar OCA was achieved from the other four images combined (OCA 72%, kappa 0.64). The highest classification accuracy was achieved by combining three images: 17 March, 16 July, 27 October. This achieved an OCA of 84% (kappa 0.79), increasing to 88% (kappa 0.85) after a post-classification clump and sieve procedure. Canopy height and percentage cover of oak explained 72% of variance in canopy density. Conclusions: The ability to discriminate and map temperate deciduous tree species in airborne multi-spectral imagery is increased using time-series data. An autumn image supplemented with an image from both the green-up and full-leaf phases was optimum. The derived tree species map provides a more powerful ecological tool for determining woodland structural/compositional relationships than field-based measures. [source] Ribosomal DNA pseudogenes are widespread in the eucalypt group (Myrtaceae): implications for phylogenetic analysisCLADISTICS, Issue 2 2008Michael J. Bayly Pseudogenes from the 18S,5.8S,26S cistron of nuclear ribosomal DNA are reported in the eucalypt group (Myrtaceae), which includes seven genera. Putative pseudogenes are identified by a range of sequence comparisons including: the number of CpG and CpNpG methylation sites, GC content, estimated secondary structure stability of internal transcribed spacer transcripts, the presence of conserved motifs, patterns of sequence relationships and inferred substitution patterns. These comparisons indicate that pseudogenes are widespread, being evident in Eucalyptus (subgenera Eucalyptus and Eudesmia), Corymbia (extracodical sections Rufaria, Ochraria and Blakearia), Angophora, Stockwellia quadrifida and Arillastrum gummiferum. At least six sequences used in previous phylogenetic studies are identified as pseudogenes, and a further 10 pseudogenes are newly sequenced here. Gene trees place pseudogenes in a number of distinct lineages: pseudogenes from Eucalyptus group with other Eucalyptus sequences, those from Corymbia and Angophora group with other Corymbia/Angophora sequences, that from Stockwellia groups with other sequences from the Eucalyptopsis group, and that from Arillastrum is placed as sister to the other included sequence of Arillastrum. Some pseudogenes in Eucalyptus, Corymbia and Angophora represent "deep" ribosomal DNA paralogues that pre-date species differentiation in these groups, and a recombination analysis shows no evidence of recombination between putative pseudogenes and their functional counterparts. The presence of divergent paralogues presents both challenges and opportunities for the reconstruction of eucalypt phylogenies using ribosomal DNA sequences. Phylogenetic data sets should include only orthologous sequences, but different paralogues potentially provide additional, independent, character sets for phylogenetic analyses. © The Willi Hennig Society 2007. [source] | ||||||||||