Home About us Contact
|
Home About us Contact | ||
|
|
||
Bacterial Biomass (bacterial + biomass)
Selected AbstractsStructural and functional responses of river biofilm communities to the nonsteroidal anti-inflammatory diclofenacENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 4 2007John R. Lawrence Abstract Diclofenac is a nonsteroidal anti-inflammatory drug (NSAID) that has been detected widely in surface waters in North America and Europe. The impact of diclofenac on river biofilm communities was investigated at exposures of 10 and 100 ,g L,1 of diclofenac or its molar equivalent in carbon and nutrients. Experiments were carried out with river water during spring and summer using rotating annular reactors as model systems. Diclofenac or nutrients at 10 ,g L,1 were observed to have no significant effect on algal, bacterial, and cyanobacterial biomass in spring, whereas in the summer the nutrient equivalent reduced algal biomass and diclofenac reduced cyanobacterial biomass relative to control biofilms (p < 0.05). In contrast, at 100 ,g L,1 diclofenac or nutrients, the result was increased cyanobacterial and bacterial biomass, respectively, relative to control biofilms in spring. In summer, 100 ,g L,1 diclofenac significantly increased bacterial biomass and the nutrient treatment had no significant effect (p < 0.05); both treatments resulted in increased biofilm thickness. The glycoconjugate composition of the exopolysaccharide matrix was influenced differentially by the treatments in both seasons. Biolog assessments of carbon use indicated that 100 ,g L,1 diclofenac or nutrients resulted in significant depressions in the use of carbon sources in summer and significant increases in spring. Impacts on protozoan and micrometazoan populations also were assessed. Denaturing gradient gel electrophoresis analyses of community DNA and fluorescent in situ hybridization studies indicated that diclofenac had significant effects on the nature of the bacterial community in comparison with control and nutrient-treated river biofilm communities. [source] Effects of drying regime on microbial colonization and shredder preference in seasonal woodland wetlandsFRESHWATER BIOLOGY, Issue 3 2008MARTYN D. INKLEY Summary 1. Energy budgets of wetlands in temperate deciduous forests are dominated by terrestrially derived leaf litter that decays under different drying conditions depending on autumn precipitation. We compared decay rates and microbial colonization of maple leaves under different inundation schedules in a field experiment, and then conducted a laboratory study on shredder preference. In the field, litter bags either remained submerged (permanent), were moved to a dried part of the basin once and then returned (semi-permanent), or were alternated between wet and dry conditions for 8 weeks (temporary). 2. There was no difference in decay rates among treatments, but leaves incubated under permanent and semi-permanent conditions had higher fungal and bacterial biomass, and lower C : N ratios than those incubated under alternating drying and wetting conditions. 3. To determine the effects of these differences in litter nutritional quality on shredder preference, we conducted a laboratory preference test with larvae of leaf-shredding caddisflies that inhabit the wetland. Caddisflies spent twice as much time foraging on permanent and semi-permanent litter than on litter incubated under temporary conditions. 4. There is considerable variation among previous studies in how basin drying affects litter breakdown in wetlands, and no previous information on shredder preference. We found that frequent drying in a shallow wetland reduces the nutritional quality of leaf litter (lower microbial biomass and nitrogen content), and therefore preference by invertebrate shredders. These results suggest that inter-annual shifts in drying regime should alter detritus processing rates, and hence the mobilization of the energy and nutrients in leaf litter to the wetland food web. [source] The microfood web of grassland soils responds to a moderate increase in atmospheric CO2GLOBAL CHANGE BIOLOGY, Issue 7 2005Ilja Sonnemann Abstract The response of the soil microfood web (microflora, nematodes) to a moderate increase in atmospheric CO2 (+20%) was investigated by means of a free air CO2 enrichment experiment. The study was carried out in a seminatural temperate grassland for a period of 4 consecutive years (1 year before fumigation commenced and 3 years with fumigation). Several soil biological parameters showed no change (microbial biomass, bacterial biomass) or decline (microbial respiration) in the first year of elevated CO2 treatment as compared with controls. Each of these parameters were higher than controls, however, after 3 years of treatment. The relative abundance of predaceous nematodes also decreased in year 1 of the experiment, increased in year 2, but decreased again in year 3. In contrast, the relative abundance of root hair feeding nematodes, at first, increased under elevated CO2 and then returned to the initial level again. Increased microbial biomass indicates enhanced C storage in the labile carbon pool of the active microfood web in subsequent years. According to measurements on the amounts of soil extractable C, changes in resource availability seem to be key to the response of the soil microfood web. We found a strong response of bacteria to elevated CO2, while the fungal biomass remained largely unchanged. This contrasts to findings reported in the literature. We hypothesize that this may be because of contrasting effects of different levels of CO2 enrichment on the microbial community (i.e. stimulation of bacteria at moderate levels and stimulation of fungi at high levels of CO2 enrichment). However, various CO2 effects observed in our study are similar in magnitude to those observed in other studies for a much higher level of atmospheric carbon. These include the particular sensitivity of predaceous nematodes and the long-term increase of microbial respiration. Our findings confirm that the potential of terrestrial ecosystems to accumulate additional carbon might be lower than previously thought. Furthermore, CO2 -induced changes of temperate grassland ecosystems might emerge much earlier than expected. [source] Bacterioplankton heterotrophic activity in relation to the phytoplankton compartment in a recently formed reservoirLAKES & RESERVOIRS: RESEARCH AND MANAGEMENT, Issue 1 2008Louis-B. Abstract Seasonal and spatial variations in bacterial abundance, biomass and potential heterotrophic activity in a recently flooded reservoir were measured for two consecutive years, in conjunction with phytoplankton biomass (chlorophyll- a concentration) and activity (primary production). The mean value of primary production remained constant between the two study years, while those of the chlorophyll- a concentrations, bacterial abundance, bacterial biomass and bacterial heterotrophic activity decreased. The observed trends in the bacterial variables were linked to changes in the relative importance of allochthonous dissolved organic matter, in addition to selective grazing activity on bacterioplankton. Multivariate regression analyses identified bacterial abundance (29%) and temperature (17%) as dominant correlates of the bacterial potential heterotrophic activity. We concluded that, in a new reservoir, organic matter, other than that from phytoplankton, might be of great importance for bacterioplankton metabolism. Furthermore, grazing activity on bacteria by metazoa in a new reservoir represents, on occasion, an important trophic link between the top consumer and otherwise unavailable dissolved organic carbon sources. Finally, even if little energy is transferred to larger consumers, the microbial route is still important in re-mineralizing organic matter in Sep Reservoir. [source] Ecological implications of biomass and morphotype variations of bacterioplankton: an example in a coastal zone of the Northern Adriatic Sea (Mediterranean)MARINE ECOLOGY, Issue 2 2005Rosabruna La Ferla Abstract This study had the objective of quantifying the variability in abundance, cell volume, morphology and C content of a natural bacterioplankton community in a coastal zone of the North Adriatic Sea during two periods (February and June) of two consequent years (1996 and 1997). We used epifluorescence microscopy with Acridine Orange staining procedures and a microphotographic technique. Low variability in bacterial abundance (range 0.3,3.1 × 105 cells ml,1) occurred between summer and winter periods. Conversely, the cell volume and the calculated carbon content changed greatly with warm and cold periods (ranges: 0.015,0.303 ,m3 and 5.83,42.17 fg C cell,1, respectively). Elongated bacteria were dominant while coccoid cells prevailed only in February 1997. Biomass showed high variability (range 0.12,10.21 ,g C l,1) whilst the abundance did not show noticeable differences among the sampling periods. As a consequence, quantification of bacterial biomass based solely on cell abundance must be considered with caution because the true biomass could depend on variability in cell volumes and morphotypes. [source] Carbon and nutrient limitation of soil microorganisms and microbial grazers in a tropical montane rain forestOIKOS, Issue 6 2010Valentyna Krashevska We investigated the role of carbon, nitrogen and phosphorus as limiting factors of microorganisms and microbial grazers (testate amoebae) in a montane tropical rain forest in southern Ecuador. Carbon (as glucose), nitrogen (as NH4NO3) and phosphorus (as NaH2PO4) were added separately and in combination bimonthly to experimental plots for 20 months. By adding glucose and nutrients we expected to increase the growth of microorganisms as the major food resource of testate amoebae. The response of microorganisms to experimental treatments was determined by analysing microbial biomass (SIR), fungal biomass and microbial community composition as measured by phospholipid fatty acids (PLFAs). We hypothesized that the response of testate amoebae is closely linked to that of microorganisms. Carbon addition strongly increased ergosterol concentration and, less pronounced, the amount of linoleic acid as fungal biomarker, suggesting that saprotrophic fungi are limited by carbon. Microbial biomass and ergosterol concentrations reached a maximum in the combined treatment with C, N and P indicating that both N and P also were in short supply. In contrast to saprotrophic fungi and microorganisms in total, testate amoebae suffered from the addition of C and reached maximum density by the addition of N. The results indicate that saprotrophic fungi in tropical montane rain forests are mainly limited by carbon whereas gram positive and negative bacteria benefit from increased availability of P. Testate amoebae suffered from increased dominance of saprotrophic fungi in glucose treatments but benefited from increased supply of N. The results show that testate amoebae of tropical montane rain forests are controlled by bottom,up forces relying on specific food resources rather than the amount of bacterial biomass with saprotrophic fungi functioning as major antagonists. Compared to temperate systems microbial food webs in tropical forests therefore may be much more complex than previously assumed with trophic links being rather specific and antagonistic interactions overriding trophic interactions. [source] Spatial variability in the mineralisation of the phenylurea herbicide linuron within a Danish agricultural field: multivariate correlation to simple soil parameters,PEST MANAGEMENT SCIENCE (FORMERLY: PESTICIDE SCIENCE), Issue 9 2005Jim Rasmussen Abstract The spatial variability in the mineralisation rate of linuron [N -(3,4-dichlorophenyl)- N,-methoxy- N,-methylurea] was studied within a previously treated Danish agricultural field by sampling soils from eleven different plots randomly distributed across an area of 20 × 20 m. The soils were characterised with respect to different abiotic and biotic properties including moisture content, organic matter content, pH, nutrient content, bacterial biomass, potential for mineralisation of MCPA [(4-chloro-2-methylphenoxy)acetic acid] and linuron. Five soils had a potential for mineralisation of linuron, with 5,15% of the added [ring -U- 14C]linuron metabolised to 14CO2 within 60 days at 10 °C, while no extensive mineralisation of linuron was observed in the six remaining soils within this period. A TLC analysis of the methanol-extractable residues showed no development of 14C-labelled metabolites from linuron in any of the samples. Multivariate analysis was conducted to elucidate relationships between the intrinsic properties of single soil samples and initial rate of linuron mineralisation. The analysis indicated that important soil parameters in determining the spatial heterogeneity included the Ctotal/Ntotal ratio, pH and the water-extractable potassium contents, with the first of these highly negatively correlated and the last two highly positively correlated to the initial linuron mineralisation rate. This study shows that enhanced biodegradation of linuron may develop with successive field treatments, but that considerable in-field spatial heterogeneity in the degradation rate still exists. Combined with a parallel enrichment study focused on the underlying microbial processes, the present results suggest that intrinsic soil properties affect the linuron-metabolising bacterial population and thereby determine the spatial variability in the linuron mineralisation activity. Copyright © 2005 Society of Chemical Industry [source] Ultraviolet-B Radiation Effects on the Structure and Function of Lower Trophic Levels of the Marine Planktonic Food WebPHOTOCHEMISTRY & PHOTOBIOLOGY, Issue 4 2006Gustavo A. Ferreyra ABSTRACT The impact of UV-B radiation (UVBR; 280,320 nm) on lower levels of a natural plankton assemblage (bacteria, phytoplankton and microzooplankton) from the St. Lawrence Estuary was studied during 9 days using several immersed outdoor mesocosms. Two exposure treatments were used in triplicate mesocosms: natural UVBR (N treatment, considered as the control treatment) and lamp-enhanced UVBR (H treatment, simulating 60% depletion of the ozone layer). A phytoplankton bloom developed after day 3, but no significant differences were found between treatments during the entire experiment for phytoplankton biomass (chlorophyll a and cell carbon) nor for phytoplankton cell abundances from flow cytometry and optical microscopy of three phytoplankton size classes (picoplankton, nanoplankton and microplankton). In contrast, bacterial abundances showed significantly higher values in the H treatment, attributed to a decrease in predation pressure due to a dramatic reduction in ciliate biomass (, 70,80%) in the H treatment relative to the N treatment. The most abundant ciliate species were Strombidinium sp., Prorodon ovum and Tintinnopsis sp.; all showed significantly lower abundances under the H treatment. P. ovum was the less-affected species (50% reduction in the H treatment compared with that of the N control), contrasting with ,90% for the other ones. Total specific phytoplanktonic and bacterial production were not affected by enhanced UVBR. However, both the ratio of primary to bacterial biomass and production decreased markedly under the H treatment. In contrast, the ratio of phytoplankton to bacterial plus ciliate carbon biomass showed an opposite trend than the previous results, with higher values in the H treatment at the end of the experiment. These results are explained by the changes in the ciliate biomass and suggest that UVBR can alter the structure of the lower levels of the planktonic community by selectively affecting key species. On the other hand, linearity between particulate organic carbon (POC) and estimated planktonic carbon was lost during the postbloom period in both treatments. On the basis of previous studies, our results can be attributed to the aggregation of carbon released by cells to the water column in the form of transparent exopolymer particles (TEPs) under nutrient limiting conditions. Unexpectedly, POC during such a period was higher in the H treatment than in controls. We hypothesize a decrease in the ingestion of TEPs by ciliates, in coincidence with increased DOC release by phytoplankton cells under enhanced UVBR. The consequences of such results for the carbon cycle in the ocean are discussed. [source] Determination of microbial community structures of shrimp floc cultures by biomarkers and analysis of floc amino acid profilesAQUACULTURE RESEARCH, Issue 2 2008Zhi Yong Ju Abstract Simple, rapid and reliable methods are required to monitor the microbial community change in aquatic pond for better animal performance. Four floc (suspended organic matter) samples were collected from outdoor raceways and tanks used for culturing Pacific white shrimp Litopenaeus vannamei. Twenty-two chlorophyll (Chl) and carotenoid pigments were separated, identified and quantified using high-performance liquid chromatography,ultraviolet/Vis-mass spectrometry in the freeze-dried floc samples. Algal community composition (diatoms, chlorophytes, cyanobacteria, dinoflagellates and cryptophytes) was determined by measuring concentrations of the respective taxonomic biomarkers (carotenoid fucoxanthin, lutein, zeaxanthin, peridinin and alloxanthin) as independent variables and Chl a as the dependent variable using a multiple regression model. This analysis found that the phytoplankton community of the floc samples from two groups of shrimp tanks (32 g L,1 -salinity) were diatom-dominated (81.7% and 84.4%); and two floc samples from shrimp raceways (5 and 18 g L,1 -salinity) were chlorophyte-dominated (75.4% and 82.3%). Assessment of total algal and bacterial biomass by quantification of Chl a and muramic acid, respectively, indicated that the 18 g L,1 -salinity raceway sample was bacteria-dominated, whereas the other three floc samples were algae-dominated. Sample protein quality was evaluated by its essential amino acid (AA) score and index. Arginine and lysine were found to be the two most limiting AAs for all floc samples. [source] The utilization of glycogen accumulating organisms for mixed culture production of polyhydroxyalkanoatesBIOTECHNOLOGY & BIOENGINEERING, Issue 4 2009*Article first published online: 15 JUN 200, Simon Bengtsson Abstract Production of polyhydroxyalkanoates (PHAs) by an open mixed culture enriched in glycogen accumulating organisms (GAOs) under alternating anaerobic,aerobic conditions with acetate as carbon source was investigated. The culture exhibited a stable enrichment performance over the 450-day operating period with regards to phenotypic behavior and microbial community structure. Candidatus Competibacter phosphatis dominated the culture at between 54% and 70% of the bacterial biomass throughout the study, as determined by fluorescence in situ hybridization. In batch experiments under anaerobic conditions, PHA containing 3-hydroxybutyrate (3HB) and 27,mol-% 3-hydroxyvalerate (3HV) was accumulated up to 49% of cell dry weight utilizing the glycogen pool stored in the SBR cycle. Under aerobic and ammonia limited conditions, PHA comprising only 3HB was accumulated to 60% of cell dry weight. Glycogen was consumed during aerobic PHA accumulation as well as under anaerobic conditions, but with different stoichiometry. Under aerobic conditions 0.31 C-mol glycogen was consumed per consumed C-mol acetate compared to 0.99 under anaerobic conditions. Both the PHA biomass content and the specific PHA production rate obtained were similar to what is typically obtained using the more commonly applied aerobic dynamic feeding strategy. Biotechnol. Bioeng. 2009; 104: 698,708 © 2009 Wiley Periodicals, Inc. [source] | |||||||||||||