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Smaller Regions (smaller + regions)
Selected AbstractsIdentification of 2 putative critical segments of 17q gain in neuroblastoma through integrative genomicsINTERNATIONAL JOURNAL OF CANCER, Issue 5 2008Jo Vandesompele Abstract Partial gain of chromosome arm 17q is the most frequent genetic change in neuroblastoma (NB) and constitutes the strongest independent genetic factor for adverse prognosis. It is assumed that 1 or more genes on 17q contribute to NB pathogenesis by a gene dosage effect. In the present study, we applied chromosome 17 tiling path BAC arrays on a panel of 69 primary tumors and 28 NB cell lines in order to reduce the current smallest region of gain and facilitate identification of candidate dosage sensitive genes. In all tumors and cell lines with 17q gain, large distal segments were consistently present in extra copies and no interstitial gains were observed. In addition to these large regions of distal gain with breakpoints proximal to coordinate 44.3 Mb (17q21.32), smaller regions of gain (distal to coordinate 60 Mb at 17q24.1) were found superimposed on the larger region in a minority of cases. Positional gene enrichment analysis for 17q genes overexpressed in NB showed that dosage sensitive NB oncogenes are most likely located in the gained region immediately distal to the most distal breakpoint of the 2 breakpoint regions. Interestingly, comparison of gene expression profiles between primary tumors and normal fetal adrenal neuroblasts revealed 2 gene clusters on chromosome 17q that are overexpressed in NB, i.e. a region on 17q21.32 immediately distal to the most distal breakpoint (in cases with single regions of gain) and 17q24.1, a region coinciding with breakpoints leading to superimposed gain. © 2007 Wiley-Liss, Inc. [source] Long-term changes in distribution and chemistry of middle Miocene to Quaternary volcanism in the Chokai-Kurikoma area across the Northeast Japan ArcISLAND ARC, Issue 1 2004Hirofumi Kondo Abstract To understand the characteristics of long-term spatial and temporal variation in volcanism within a volcanic arc undergoing constant subduction since the cessation of back-arc opening, a detailed investigation of middle Miocene to Quaternary volcanism was carried out within the Chokai-Kurikoma area of the Northeast Japan Arc. This study involved a survey of available literature, with new K,Ar and fission track dating, and chemical analyses. Since 14 Ma, volcanism has occurred within the Chokai-Kurikoma area in specific areas with a ,branch-like' pattern, showing an east,west trend. This is in marked contrast to the widespread distribution of volcanism with a north,south trend in the 20,14 Ma period. The east,west- trending ,branches' are characterized by regular intervals (50,100 km) of magmatism along the arc. These branches since 14 Ma are remarkably discrepant to the general northwest,southeast or north-northeast,south-southwest direction of the crustal structures that have controlled Neogene to Quaternary tectonic movements in northeast Japan. In addition, evidence indicating clustering and focusing of volcanism into smaller regions since 14 Ma was verified. Comparison of the distribution and chemistry of volcanic rocks for three principal volcanic stages (11,8, 6,3 and 2,0 Ma) revealed that widely but sparsely distributed volcanic rocks had almost the same level of alkali and incompatible element concentrations throughout the area (with the exception of Zr) in the 11,8 Ma stage. However, through the 6,3 Ma stage to the 2,0 Ma stage, the concentration level in the back-arc cluster increased, while that in the volcanic front cluster remained almost constant. Therefore, the degree of partial melting has decreased, most likely with a simultaneous increase in the depth of magma segregation within the back-arc zone, whereas within the volcanic front zone, the conditions of magma generation have changed little over the three stages. In conclusion, the evolution of the thermal structure within the mantle wedge across the arc since 14 Ma has reduced the extent of ascending mantle diapirs into smaller fields. This has resulted in the tendency for the distribution of volcanism to become localized and concentrated into more specific areas in the form of clusters from the late Miocene to Quaternary. [source] Uniform boundedness of the magnetic field in a resistive plasmaMATHEMATICAL METHODS IN THE APPLIED SCIENCES, Issue 2 2003Manuel Núñez While the magnetic energy in a plasma can be easily bounded by classical energy inequalities, the behaviour of the maximum of the magnetic field is less clear. In fact, the field in chaotic flows appears to concentrate in progressively smaller regions of the domain, so that conceivably it could grow there without limit. However, we prove that as long as the magnetic energy and the plasma remain bounded, so does the magnetic field. The dependence of these bounds on the main plasma parameters is analysed. Copyright © 2003 John Wiley & Sons, Ltd. [source] Increased tibiofemoral cartilage contact deformation in patients with anterior cruciate ligament deficiencyARTHRITIS & RHEUMATISM, Issue 12 2009Samuel K. Van de Velde Objective To investigate the in vivo cartilage contact biomechanics of the tibiofemoral joint following anterior cruciate ligament (ACL) injury. Methods Eight patients with an isolated ACL injury in 1 knee, with the contralateral side intact, participated in the study. Both knees were imaged using a specific magnetic resonance sequence to create 3-dimensional models of knee bone and cartilage. Next, each patient performed a lunge motion from 0° to 90° of flexion as images were recorded with a dual fluoroscopic system. The three-dimensional knee models and fluoroscopic images were used to reproduce the in vivo knee position at each flexion angle. With this series of knee models, the location of the tibiofemoral cartilage contact, size of the contact area, cartilage thickness at the contact area, and magnitude of the cartilage contact deformation were compared between intact and ACL-deficient knees. Results Rupture of the ACL changed the cartilage contact biomechanics between 0° and 60° of flexion in the medial compartment of the knee. Compared with the contralateral knee, the location of peak cartilage contact deformation on the tibial plateaus was more posterior and lateral, the contact area was smaller, the average cartilage thickness at the tibial cartilage contact area was thinner, and the resultant magnitude of cartilage contact deformation was increased. Similar changes were observed in the lateral compartment, with increased cartilage contact deformation from 0° to 30° of knee flexion in the presence of ACL deficiency. Conclusion ACL deficiency alters the in vivo cartilage contact biomechanics by shifting the contact location to smaller regions of thinner cartilage and by increasing the magnitude of the cartilage contact deformation. [source] | ||||||||||