Small Population Size (small + population_size)

Distribution by Scientific Domains
Distribution within Life Sciences


Selected Abstracts


Management actions are required to improve the viability of the rare grassland herb Carlina biebersteinii

NORDIC JOURNAL OF BOTANY, Issue 1-2 2008
Satu Ramula
Small population size of many rare or endangered plant species makes a quantitative assessment of population status challenging because of the lack of detailed demographic data on different life-history stages. However, an urgent assessment is often required to start possible management actions. We performed a count-based population viability analysis (PVA) using discontinuous time series to quantitatively assess the viability of a rare, monocarpic, grassland herb Carlina biebersteinii Bernh. ex Hornem. (synonyms: C. vulgaris L. ssp. longifolia, C. vulgaris L. ssp. stricta) and examined demographic and environmental factors contributing to its viability. Based on 12 abundance counts of eight C. biebersteinii populations in Finland, we found that seven out of the eight population sizes declined during the observation period, and that annual population growth rates were slightly synchronised among the populations. Synchrony in annual population growth rates declined with increasing geographic distances among the populations, while fluctuations in the number of flowering plants were unrelated to geographic distances among the populations. According to stochastic simulations, the risk of losing all flowering individuals during the next 20,years will be high for unmanaged populations. To prevent the populations from gradually declining, our results suggest that summer grazing or removal of woody vegetation is required to increase habitat openness and consequently, to improve fecundity and seedling recruitment. [source]


Introduction Strategies Put to the Test: Local Adaptation versus Heterosis

CONSERVATION BIOLOGY, Issue 3 2004
PHILIPPINE VERGEER
exogamia; introducciones multi-fuente; introducciones uni-fuente; Succisa pratensis Abstract:,Plant biodiversity has declined seriously because of both habitat deterioration and habitat fragmentation. As a result, many species have been forced into small, fragmented, and isolated populations and are believed to suffer from higher extinction risks. Genetic reinforcement and the establishment of new populations are now widely used to prevent extinction. However, the genetic background of transplants may seriously affect the long-term success of these populations because increased genetic variation may reduce the risk of inbreeding or lead to better performance by restored heterozygosity levels (heterosis). Introduced transplants, however, may be poorly adapted to the new local conditions. We tested the initial success of alternative introduction strategies. We evaluated the potential for inbreeding, heterosis, and/or local adaptation after introduction of artificial populations of Succisa pratensis. We introduced individuals from local and distant artificial populations that were created from either small or large populations. We created the artificial populations with the same census population size but varying effective population sizes by adjusting the relatedness of individuals. We analyzed the demographic consequences of inbreeding, heterosis, and/or local adaptation of these artificial populations. Reduced performance after selfing was manifested by a reduction in seed production, seed weight, germination, and flowering percentage. Seed production, seed weight, flowering percentage, and number of flowerheads were negatively affected by small population size. Local adaptation increased biomass and flowering percentage for local individuals. Seed weight and seed production exhibited significant heterosis. Our results demonstrate that threatened populations can benefit from introduction and genetic reinforcement of individuals from related populations. Significant differences among the artificial populations for several measured performance components suggest that introduction or reinforcement is best achieved through material from a local population or, when unavailable, from several large populations. Resumen:,La biodiversidad de plantas ha declinado seriamente tanto por el deterioro como la fragmentación de hábitats. Como resultado, muchas especies han sido relegadas a poblaciones pequeñas, fragmentadas y aisladas cuyos riesgos de extinción se piensa que son mayores. El reforzamiento genético y el establecimiento de poblaciones nuevas se utilizan ampliamente en la actualidad para prevenir la extinción. Sin embargo, los antecedentes genéticos de transplantes pueden afectar seriamente el éxito de estas poblaciones a largo plazo debido a que el incremento en la variación genética puede reducir el riesgo de endogamia o puede conducir a un mejor rendimiento por lograr niveles de heterocigosidad restaurados (heterosis). No obstante, los trasplantes introducidos pueden adaptarse deficientemente a las nuevas condiciones locales. Probamos el éxito inicial de estrategias de introducción alternativas. Evaluamos el potencial de endogamia, heterosis y/o adaptación local después de la introducción de poblaciones artificiales de Succisa pratensis. Introdujimos individuos de poblaciones locales y de poblaciones artificiales distantes que fueron creadas a partir de poblaciones tanto pequeñas como grandes. Las poblaciones artificiales fueron creadas con el mismo tamaño poblacional censal pero variaron en tamaños poblacionales efectivos al ajustar la parentela de los individuos. Analizamos las consecuencias demográficas de la endogamia, heterosis y/o adaptación local de estas poblaciones artificiales. Después de la autofecundación se manifestó una reducción en el rendimiento por reducción en la producción y peso de semillas y en el porcentaje de germinación y floración. La producción y peso de semillas, el porcentaje de floración y el número de botones florales fueron afectados negativamente por el tamaño poblacional pequeño. La adaptación local incrementó la biomasa y el porcentaje de floración en individuos locales. El peso y producción de semillas mostró heterosis significativa. Nuestros resultados demuestran que las poblaciones amenazadas pueden beneficiarse de la introducción y del reforzamiento genético de individuos de poblaciones emparentadas. Las diferencias significativas entre las poblaciones artificiales en varios de los componentes de rendimiento medidos sugiere que la introducción o reforzamiento se logra mejor con material de una población local o, cuando no disponible, con material de varias poblaciones grandes. [source]


Genetic Allee effects on performance, plasticity and developmental stability in a clonal plant

ECOLOGY LETTERS, Issue 6 2000
M. Fischer
Negative effects of small population size on fitness, so-called Allee effects, may threaten population persistence even in intact habitat remnants. We studied genotypes of 14 isolated populations of the clonal plant Ranunculus reptans, for which molecular genetic (RAPD-) variability is higher for large than for small populations. In a competition-free greenhouse environment vegetative offspring of genotypes from large populations produced more rosettes and flowers, indicating higher fitness. Within-genotype coefficients of variation in performance traits, indicating developmental instability, were lower for genotypes from populations with higher RAPD-variability. In competition with a taller grass, we found relative reduction in leaf length less pronounced for plants from large populations, suggesting higher adaptive plasticity. Our experimental study of a plant with predominantly vegetative reproduction suggests, that negative genetic effects of recent habitat fragmentation, which so far rather were expected in plants with frequent sexual reproduction, are more severe and more common than previously acknowledged. [source]


HOW ARE DELETERIOUS MUTATIONS PURGED?

EVOLUTION, Issue 12 2003
DRIFT VERSUS NONRANDOM MATING
Abstract Accumulation of deleterious mutations has important consequences for the evolution of mating systems and the persistence of small populations. It is well established that consanguineous mating can purge a part of the mutation load and that lethal mutations can also be purged in small populations. However, the efficiency of purging in natural populations, due to either consanguineous mating or to reduced population size, has been questioned. Consequences of consanguineous mating systems and small population size are often equated under "inbreeding" because both increase homozygosity, and selection is though to be more efficient against homozygous deleterious alleles. I show that two processes of purging that I call "purging by drift" and "purging by nonrandom mating" have to be distinguished. Conditions under which the two ways of purging are effective are derived. Nonrandom mating can purge deleterious mutations regardless of their dominance level, whereas only highly recessive mutations can be purged by drift. Both types of purging are limited by population size, and sharp thresholds separate domains where purging is either effective or not. The limitations derived here on the efficiency of purging are compatible with some experimental studies. Implications of these results for conservation and evolution of mating systems are discussed. [source]


Low genetic diversity and high genetic differentiation in the critically endangered Omphalogramma souliei (Primulaceae): implications for its conservation

JOURNAL OF SYSTEMATICS EVOLUTION, Issue 2 2009
Yuan HUANG
Abstract Omphalogramma souliei Franch. is an endangered perennial herb only distributed in alpine areas of SW China. ISSR markers were applied to determine the genetic variation and genetic structure of 60 individuals of three populations of O. souliei in NW Yunnan, China. The genetic diversity at the species level is low with P=42.5% (percentage of polymorphic bands) and Hsp=0.1762 (total genetic diversity). However, a high level of genetic differentiation among populations was detected based on different measures (Nei's genetic diversity analysis: Gst=0.6038; AMOVA analysis: Fst=0.6797). Low level of genetic diversity within populations and significant genetic differentiation among populations might be due to the mixed mating system in which xenogamy predominated and autogamy played an assistant role in O. souliei. The genetic drift due to small population size and limited current gene flow also resulted in significant genetic differentiation. The assessment of genetic variation and differentiation of the endangered species provides important information for conservation on a genetic basis. Conservation strategies for this rare endemic species are proposed. [source]


Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence?

MOLECULAR ECOLOGY, Issue 15 2008
FRISO P. PALSTRA
Abstract Genetic stochasticity due to small population size contributes to population extinction, especially when population fragmentation disrupts gene flow. Estimates of effective population size (Ne) can therefore be informative about population persistence, but there is a need for an assessment of their consistency and informative relevance. Here we review the body of empirical estimates of Ne for wild populations obtained with the temporal genetic method and published since Frankham's (1995) review. Theoretical considerations have identified important sources of bias for this analytical approach, and we use empirical data to investigate the extent of these biases. We find that particularly model selection and sampling require more attention in future studies. We report a median unbiased Ne estimate of 260 (among 83 studies) and find that this median estimate tends to be smaller for populations of conservation concern, which may therefore be more sensitive to genetic stochasticity. Furthermore, we report a median Ne/N ratio of 0.14, and find that this ratio may actually be higher for small populations, suggesting changes in biological interactions at low population abundances. We confirm the role of gene flow in countering genetic stochasticity by finding that Ne correlates strongest with neutral genetic metrics when populations can be considered isolated. This underlines the importance of gene flow for the estimation of Ne, and of population connectivity for conservation in general. Reductions in contemporary gene flow due to ongoing habitat fragmentation will likely increase the prevalence of genetic stochasticity, which should therefore remain a focal point in the conservation of biodiversity. [source]


Population genetic structure, gene flow and sex-biased dispersal in frillneck lizards (Chlamydosaurus kingii)

MOLECULAR ECOLOGY, Issue 15 2008
BEATA UJVARI
Abstract By using both mitochondrial and nuclear multiloci markers, we explored population genetic structure, gene flow and sex-specific dispersal of frillneck lizards (Chlamydosaurus kingii) sampled at three locations, separated by 10 to 50 km, in a homogenous savannah woodland in tropical Australia. Apart from a recombinant lizard, the mitochondrial analyses revealed two nonoverlapping haplotypes/populations, while the nuclear markers showed that the frillneck lizards represented three separate clusters/populations. Due to the small population size of the mtDNA, fixation may occur via founder effects and/or drift. We therefore suggest that either of these two processes, or a combination of the two, are the most likely causes of the discordant results obtained from the mitochondrial and the nuclear markers. In contrast to the nonoverlapping mitochondrial haplotypes, in 12 out of 74 lizards, mixed nuclear genotypes were observed, hence revealing a limited nuclear gene flow. Although gene flow should ultimately result in a blending of the populations, we propose that the distinct nuclear population structure is maintained by frequent fires resulting in local bottlenecks, and concomitant spatial separation of the frillneck lizard populations. Limited mark,recapture data and the difference in distribution of the mitochondrial and nuclear markers suggest that the mixed nuclear genotypes were caused by juvenile male-biased dispersal. [source]


Discrepancies in population differentiation at microsatellites, mitochondrial DNA and plumage colour in the pied flycatcher , inferring evolutionary processes

MOLECULAR ECOLOGY, Issue 8 2000
J. Haavie
Abstract Genetic differentiation between three populations of the pied flycatcher Ficedula hypoleuca (Norway, Czech Republic and Spain, respectively) was investigated at microsatellite loci and mitochondrial DNA (mtDNA) sequences and compared with the pattern of differentiation of male plumage colour. The Czech population lives sympatrically with the closely related collared flycatcher (F. albicollis) whereas the other two are allopatric. Allopatric populations are on average more conspicuously coloured than sympatric ones, a pattern that has been explained by sexual selection for conspicuous colour in allopatry and a character displacement on breeding plumage colour in sympatry that reduces the rate of hybridization with the collared flycatcher. The Czech population was genetically indistinguishable from the Norwegian population at microsatellite loci and mtDNA sequences. Recent isolation and/or gene flow may explain the lack of genetic differentiation. Accordingly, different selection on plumage colour in the two populations is either sufficiently strong so that gene flow has little impact on the pattern of colour variation, or differentiation of plumage colour occurred so recently that the (presumably) neutral, fast evolving markers employed here are unable to reflect the differentiation. Genetically, the Spanish population was significantly differentiated from the other populations, but the divergence was much more pronounced at mtDNA compared to microsatellites. This may reflect increased rate of differentiation by genetic drift at the mitochondrial, compared with the nuclear genome, caused by the smaller effective population size of the former genome. In accordance with this interpretation, a genetic pattern consistent with effects of small population size in the Spanish population (genetic drift and inbreeding) were also apparent at the microsatellites, namely reduced allelic diversity and heterozygous deficiency. [source]


Mitochondrial DNA patterns in the Macaronesia islands: Variation within and among archipelagos

AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 4 2010
Cristina Santos
Abstract Macaronesia covers four Atlantic archipelagos: the Azores, Madeira, the Canary Islands, and the Cape Verde islands. When discovered by Europeans in the 15th century, only the Canaries were inhabited. Historical reports highlight the impact of Iberians on settlement in Macaronesia. Although important differences in their settlement are documented, its influence on their genetic structures and relationships has yet to be ascertained. In this study, the hypervariable region I (HVRI) sequence and coding region polymorphisms of mitochondrial DNA (mtDNA) in 623 individuals from the Azores (120) and Canary Islands (503) were analyzed. Combined with published data, these give a total of 1,542 haplotypes from Macaronesia and 1,067 from the Iberian Peninsula. The results obtained indicate that Cape Verde is the most distinctive archipelago, with an mtDNA pool composed almost exclusively of African lineages. However, the other archipelagos present an mtDNA profile dominated by the presence of West-Eurasian mtDNA haplogroups with African lineages present in varying proportions. Moreover, no signs of integration of typical Canarian U6 lineages in the other archipelagos were detected. The four Macaronesia archipelagos currently have differentiated genetic profiles, and the Azores present the highest intra-archipelago differentiation and the lowest values of diversity. The analyses performed show that the present-day genetic profile of the Macaronesian archipelagos was mainly determined by the initial process of settlement and further microdifferentiation probably as a consequence of the small population size of some islands. Moreover, contacts between archipelagos seem to have had a low impact on the mtDNA genetic pool of each archipelago. Am J Phys Anthropol, 2010. © 2009 Wiley-Liss, Inc. [source]


Albatrosses, eagles and newts, Oh My!: exceptions to the prevailing paradigm concerning genetic diversity and population viability?

ANIMAL CONSERVATION, Issue 5 2010
D. H. Reed
Abstract Numerous recent papers have demonstrated a central role for genetic factors in the extinction process or have documented the importance of gene flow in reversing population declines. This prompted one recent publication to declare that a revolution in conservation genetics has occurred. Contemporaneously with this revolution are a series of papers demonstrating long-term population persistence for several species despite having little or no detectable genetic variation. In a couple of notable cases, populations have been shown to have survived for centuries at small population size and with depleted levels of genetic variation. These contradictory results demand an explanation. In this review, I will show that these results do not necessarily fly in the face of theory as sometimes stated. The reconciliation of these two sets of observations relies on the incorporation of two major concepts. (1) Genetic factors do not act in a vacuum and it is their interaction with the environment, the strength and type of selection imposed, and the life history of the organism that determine the relative importance of genetic factors to extinction risk. (2) The relationship between molecular estimates of genetic variation and evolutionary potential, the relevance of genetic bottlenecks to adaptive genetic variation, and the nature of the stochastic process of extinction must be better integrated into expectations of population viability. Reports of populations persisting for hundreds of generations with very little detectable genetic variation provide us not only with valuable information but also with hope. However, recent studies suggest that we should not be sanguine about the importance of genetic diversity in the conservation of biodiversity. [source]


Life-history traits associated with fragmentation vulnerability of lizards in the Thousand Island Lake, China

ANIMAL CONSERVATION, Issue 4 2009
Y. Wang
Abstract Following habitat fragmentation, the remnant faunal community will undergo a period of species loss or ,relaxation.' Theory predicts that species with particular life-history traits, such as a small population size, small geographical range, low fecundity and large body size, should be more vulnerable to fragmentation. In this study, we investigated the relationships between the above life-history traits and the fragmentation vulnerability index (the number of islands occupied) of five lizard species inhabiting recently isolated land-bridge islands in the Thousand Island Lake, China. Data on life-history traits were collected from field surveys (population density) and from the literature (body size, clutch size and geographical range size). The species,area relationships for lizards sampled from the mainland versus on the islands differed significantly (i.e. the number of species inhabiting islands was decreased relative to similar-sized areas on the mainland), indicating that species extinction has occurred on all of the study islands following isolation. For the fragmentation vulnerability index, model selection based on Akaike's information criterion identified natural density at mainland sites as the best correlate of vulnerability to fragmentation, supporting the hypothesis that rare species are most vulnerable to local extinction and will be lost first from fragmented landscapes. In contrast, there was little evidence for an effect of lizards' snout,vent length, clutch size or geographical range size on fragmentation vulnerability. Identification of species traits that render some species more vulnerable to fragmentation than others has important implications for conservation and can be used to aid direct management efforts. [source]


Assessing genetic diversity for conservation management: a case study of a threatened reptile

ANIMAL CONSERVATION, Issue 2 2009
K. A. Miller
Abstract The consequences of inbreeding in small isolated populations are well documented, yet populations are often managed in isolation to avoid irreversibly mixing genetic lineages and to maintain the historic integrity of each population. Three remaining populations of Whitaker's skink (Cyclodina whitakeri) in New Zealand, remnants of a once wider distribution, illustrate the conflict between this genetic goal (separate management of populations) with the more tangible and immediate threats of small population size and inbreeding. Middle and Castle Islands harbour populations of C. whitakeri and have been separated from each other and from the mainland for ,10 000 years. The single mainland population at Pukerua Bay is extremely small, declining and deemed a high priority for management. We sequenced a 550 bp region of mitochondrial DNA (mtDNA,ND2) and genotyped animals from all three populations at 13 microsatellite loci. The population of C. whitakeri at Pukerua Bay showed marked differences from the island populations at both mtDNA (unique, fixed haplotype) and microsatellite loci (FST,0.20), and private alleles were detected at a high frequency (24% of all alleles). However, we attribute this pattern to an historic genetic gradient coupled with rapid genetic drift. Further, animals in captivity show genetic signatures of both Pukerua Bay and island populations, despite the goal to maintain a pure Pukerua Bay stock. The mixed genetic stock in captivity provides an opportunity for the addition of skinks from Middle Island to evaluate the risks of further population hybridization, including the disruption of potential local adaptation, while mitigating the risks of inbreeding. [source]


Estimating population parameters in a threatened arctic fox population using molecular tracking and traditional field methods

ANIMAL CONSERVATION, Issue 4 2008
T. Meijer
Abstract Comprehensive population parameter data are useful for assessing effective conservation actions. The Fennoscandian arctic fox Alopex lagopus is critically endangered and the population size is estimated at 120 individuals that are fragmented into four isolated populations. Here, we use molecular tracking and visual observations to estimate population size and survival in one of the populations on the Swedish mountain tundra during a year of low food availability. We collected 98 arctic fox faecal samples during the winter of 2006 and recorded visual observations of ear-tagged individuals during the summer of 2005 and 2006. The faecal samples were analysed for variation in nine microsatellite loci and matched to the genetic profiles of previously ear-tagged individuals from 2001 to 2005. During winter 2006, the minimum number alive was 12 individuals using visual observations, 30 using molecular tracking and 36 by combining the datasets. Population size was estimated through mark,recapture for the molecular tracking and visual observation datasets and through rarefaction analyses for molecular tracking data. The mark,recapture estimate for visual observations was uninformative due to the large confidence interval (CI) (i.e. 6,212 individuals). Based on the molecular tracking dataset combined with the minimum number alive for visual observations and molecular tracking, we concluded a consensus population size of 36,55 individuals. We also estimated the age-specific finite survival rate during 1 year (July 2005 to July 2006) by combining molecular tracking with visual observations. Juvenile survival on a yearly basis was 0.08 (95% CI 0.02,0.18) while adults had a survival of 0.59 (95% CI 0.39,0.82). Juveniles displayed a lower survival than the adults during autumn (P<0.01) whereas no age-specific survival difference during spring was found. The risk of negative effects due to the small population size and low juvenile survival is accordingly considerable. [source]


Genetic characterization of four strains of Nile tilapia (Oreochromis niloticus L.) using microsatellite markers

ANIMAL GENETICS, Issue 2 2004
M. J. M. Rutten
Summary Four domesticated strains of Nile tilapia (Oreochromis niloticus L.) were genetically characterized using 14 microsatellite markers and 64 animals per strain. Two strains, Chitralada (AIT) and International Development Research Centers (IDRC) were obtained from the AIT institute, Bangkok, Thailand. The GIFT strain (5th generation) came from NAGRI, Thailand, and the GÖTT strain was supplied by the University of Göttingen, Germany. The average numbers of alleles per marker were 5.0 (GÖTT), 5.4 (AIT), 5.6 (IDRC) and 7.5 (GIFT). Private alleles were found at all markers with the exception of two. No fixation of alleles was found at any marker. Population differentiation, FST, was 0.178 (great genetic differentiation) and confirmed grouping of the animals in strains. The expected level of heterozygosity ranged from 0.624 to 0.711, but the observed level of heterozygosity significantly deviated from the expected level in three strains. This was probably because of small population size. Moderate to great genetic differentiation was found between strains. A phylogenetic tree reflected the strains known histories. Application of the Weitzman approach showed that all strains have added value for the total genetic diversity and thus should be retained. [source]


Gene flow and melanism in garter snakes revisited: a comparison of molecular markers and island vs. coalescent models

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 3 2003
TONYA D. BITTNER
Within populations, the stochastic effect of genetic drift and deterministic effect of natural selection are potentially weakened or altered by gene flow among populations. The influence of gene flow on Lake Erie populations of the common garter snake has been of particular interest because of a discontinuous colour pattern polymorphism (striped vs. melanistic) that is a target of natural selection. We reassessed the relative contributions of gene flow and genetic drift using genetic data and population size estimates. We compared all combinations of two marker systems and two analytical approaches to the estimation of gene flow rates: allozymes (data previously published), microsatellite DNA (new data), the island model (FST -based approach), and a coalescence-based approach. For the coalescence approach, mutation rates and sampling effects were also investigated. While the two markers produced similar results, gene flow based on FST was considerably higher (Nm > 4) than that from the coalescence-based method (Nm < 1). Estimates of gene flow are likely to be inflated by lack of migration-drift equilibrium and changing population size. Potentially low rates of gene flow (Nm < 1), small population size at some sites, and positive correlations of number of microsatellite DNA alleles and island size and between M, mean ratio of number of alleles to range in allele size, and island size suggest that in addition to selection, random genetic drift may influence colour pattern frequencies. © 2003 The Linnean Society of London, Biological Journal of the Linnean Society, 2003, 79, 389,399. [source]


Strength of Habitat and Landscape Metrics in Predicting Golden-Headed Lion Tamarin Presence or Absence in Forest Patches in Southern Bahia, Brazil

BIOTROPICA, Issue 3 2010
Becky E. Raboy
ABSTRACT We investigated the effects of forest fragmentation on golden-headed lion tamarins (Leontopithecus chrysomelas) by qualitatively and quantitatively characterizing the landscape throughout the species range, conducting surveys, and exploring predictive models of presence and absence. We identified 784 forest patches that varied in size, shape, core area, habitat composition, elevation, and distance to neighboring patches and towns. We conducted 284 interviews with local residents and 133 playback experiments in 98 patches. Results indicated a reduction in the western portions of the former species range. We tested whether L. chrysomelas presence or absence was related to the aforementioned fragmentation indices using Monte Carlo logistic regression techniques. The analysis yielded a majority of iterations with a one-term final model of which Core Area Index (percent of total area that is core) was the only significant type. Model concordance ranged between 65 and 90 percent. Area was highlighted for its potential predictive ability. Although final models for area lacked significance, their failure to reach significance was marginal and we discuss potential confounding factors weakening the term's predictive ability. We conclude that lower Core Area Index scores are useful indicators of forest patches at risk for not supporting L. chrysomelas. Taken together, our analyses of the landscape, survey results, and logistic regression modeling indicated that the L. chrysomelas metapopulation is facing substantial threat. The limited vagility of lion tamarins in nonforest matrix may lead to increasingly smaller and inbred populations subject to significant impact from edge effects and small population size. Local extinction is imminent in many forest patches in the L. chrysomelas range. Abstract in Portuguese is available at http://www.blackwell-synergy.com/loi/btp [source]


Cancer rates among American Indians and Alaska Natives,,

CANCER, Issue 6 2003
Is there a national perspective?
Abstract BACKGROUND Two important goals of cancer surveillance are to provide milestones in the effort to reduce the cancer burden and to generate observations that form the basis for cancer research and intervention for cancer prevention and control. Determination of the cancer burden among American Indians and Alaska Natives (AIAN) has been difficult largely due to lack of data collection efforts in many areas of the country and misclassification of racial data that results in undercounting of Native Americans. There is a revitalized commitment to improve data collection among the national agencies and organizations. METHODS Data on cancer trends from 12 areas covered by the Surveillance, Epidemiology and End Results (SEER) Program were reviewed for incidence and death rates for 1992,2000. AIAN trends were examined and compared with trends among other racial/ethnic population groups. Reference was made to studies of disease-specific survival for nine of the SEER areas for 1988,1997. RESULTS In SEER areas, cancer incidence rates for AIAN populations appeared to be decreasing significantly for lung and breast cancers among women and for prostate cancer among men. However, death rates rose, although not significantly, over the same period, except for a significant decrease in prostate cancer. Among the cancers with rising death rates were lung cancer (AIAN women) and colorectal cancer (AIAN men). In addition, survival often was lower for AIAN populations. CONCLUSIONS Although the incidence was stable or decreased among AIAN populations, increased death rates and lower survival rates indicate the need for intensified application of cancer prevention and control measures, including screening and treatment. Difficulties in interpretation of data include small population size and substantial interregional differences in rates. Cancer 2003;98:1262,72. Published 2003 by the American Cancer Society. DOI 10.1002/cncr.11633 [source]


Life history and population size variability in a relict plant.

DIVERSITY AND DISTRIBUTIONS, Issue 1 2008
Different routes towards long-term persistence
ABSTRACT A central tenet of conservation biology is that population size affects the persistence of populations. However, many narrow endemic species combine small population ranges and sizes with long persistence, thereby challenging this tenet. I examined the performance of three different-sized populations of Petrocoptis pseudoviscosa (Caryophyllaceae), a palaeoendemic rupicolous herb distributed along a small valley in the Spanish Pyrenees. Reproductive and demographic parameters were recorded over 6 years, and deterministic and stochastic matrix models were constructed to explore population dynamics and extinction risk. Populations differed greatly in structure, fecundity, recruitment, survival rate, and life span. Strong differentiation in life-history parameters and their temporal variability resulted in differential population vulnerability under current conditions and simulated global changes such as habitat fragmentation or higher climatic fluctuations. This study provides insights into the capacity of narrow endemics to survive both at extreme environmental conditions and at small population sizes. When dealing with species conservation, the population size,extinction risk relationship may be too simplistic for ancient, ecologically restricted organisms, and some knowledge of life history may be most important to assess their future. [source]


Extinction vulnerability in marine populations

FISH AND FISHERIES, Issue 1 2003
Nicholas K Dulvy
Abstract Human impacts on the world's oceans have been substantial, leading to concerns about the extinction of marine taxa. We have compiled 133 local, regional and global extinctions of marine populations. There is typically a 53-year lag between the last sighting of an organism and the reported date of the extinction at whatever scale this has occurred. Most disappearances (80%) were detected using indirect historical comparative methods, which suggests that marine extinctions may have been underestimated because of low-detection power. Exploitation caused most marine losses at various scales (55%), followed closely by habitat loss (37%), while the remainder were linked to invasive species, climate change, pollution and disease. Several perceptions concerning the vulnerability of marine organisms appear to be too general and insufficiently conservative. Marine species cannot be considered less vulnerable on the basis of biological attributes such as high fecundity or large-scale dispersal characteristics. For commercially exploited species, it is often argued that economic extinction of exploited populations will occur before biological extinction, but this is not the case for non-target species caught in multispecies fisheries or species with high commercial value, especially if this value increases as species become rare. The perceived high potential for recovery, high variability and low extinction vulnerability of fish populations have been invoked to avoid listing commercial species of fishes under international threat criteria. However, we need to learn more about recovery, which may be hampered by negative population growth at small population sizes (Allee effect or depensation) or ecosystem shifts, as well as about spatial dynamics and connectivity of subpopulations before we can truly understand the nature of responses to severe depletions. The evidence suggests that fish populations do not fluctuate more than those of mammals, birds and butterflies, and that fishes may exhibit vulnerability similar to mammals, birds and butterflies. There is an urgent need for improved methods of detecting marine extinctions at various spatial scales, and for predicting the vulnerability of species. [source]


Contemporary habitat loss reduces genetic diversity in an ecologically specialized butterfly

JOURNAL OF BIOGEOGRAPHY, Issue 7 2010
Neil Collier
Abstract Aim, This study investigated the influence of contemporary habitat loss on the genetic diversity and structure of animal species using a common, but ecologically specialized, butterfly, Theclinesthes albocincta (Lepidoptera: Lycaenidae), as a model. Location, South Australia. Methods, We used amplified fragment length polymorphism (AFLP) and allozyme datasets to investigate the genetic structure and genetic diversity among populations of T. albocincta in a fragmented landscape and compared this diversity and structure with that of populations in two nearby landscapes that have more continuous distributions of butterflies and their habitat. Butterflies were sampled from 15 sites and genotyped, first using 363 informative AFLP bands and then using 17 polymorphic allozyme loci (n = 248 and 254, respectively). We complemented these analyses with phylogeographic information based on mitochondrial DNA (mtDNA) haplotype information derived from a previous study in the same landscapes. Results, Both datasets indicated a relatively high level of genetic structuring across the sampling range (AFLP, FST = 0.34; allozyme, FST = 0.13): structure was greatest among populations in the fragmented landscape (AFLP, FST = 0.15; allozyme, FST = 0.13). Populations in the fragmented landscape also had significantly lower genetic diversity than populations in the other two landscapes: there were no detectable differences in genetic diversity between the two continuous landscapes. There was also evidence (r2 = 0.33) of an isolation by distance effect across the sampled range of the species. Main conclusions, The multiple lines of evidence, presented within a phylogeographic context, support the hypothesis that contemporary habitat fragmentation has been a major driver of genetic erosion and differentiation in this species. Theclinesthes albocincta populations in the fragmented landscape are thus likely to be at greater risk of extinction because of reduced genetic diversity, their isolation from conspecific subpopulations in other landscapes, and other extrinsic forces acting on their small population sizes. Our study provides compelling evidence that habitat loss and fragmentation have significant rapid impacts on the genetic diversity and structure of butterfly populations, especially specialist species with particular habitat preferences and poor dispersal abilities. [source]


Conservation genetics of the rare and endangered Leucopogon obtectus (Ericaceae)

MOLECULAR ECOLOGY, Issue 10 2001
G. Zawko
Abstract Leucopogon obtectus Benth. is a declared rare species found in the kwongan vegetation in Western Australia. Plants on a mineral sand mine and the rehabilitation area are subject to disturbance. Genetic diversity was examined within and among all known populations using random amplified polymorphic DNA (RAPD) and amplified fragment length polymorphisms (AFLPs) for conservation. Both molecular markers revealed a high percentage (> 89%) of polymorphic markers and a high mean genetic distance among individuals (D = 0.3). Analysis of molecular variance showed that 86.7% (RAPD) and 89.7% (AFLP) of variability was partitioned among individuals within populations. Exact tests showed no significant population differentiation. The analyses indicated that L. obtectus exhibits high levels of genetic diversity despite small population sizes. The high levels of variability among individuals and the lack of clear population differentiation suggest that this species comprises a single, genetically diverse group. Conservation and management of L. obtectus should concentrate on maintaining the high levels of genetic variability through mixing genotypes and promoting outcrossing. [source]


When are genetic methods useful for estimating contemporary abundance and detecting population trends?

MOLECULAR ECOLOGY RESOURCES, Issue 4 2010
DAVID A. TALLMON
Abstract The utility of microsatellite markers for inferring population size and trend has not been rigorously examined, even though these markers are commonly used to monitor the demography of natural populations. We assessed the ability of a linkage disequilibrium estimator of effective population size (Ne) and a simple capture-recapture estimator of abundance (N) to quantify the size and trend of stable or declining populations (true N = 100,10,000), using simulated Wright,Fisher populations. Neither method accurately or precisely estimated abundance at sample sizes of S = 30 individuals, regardless of true N. However, if larger samples of S = 60 or 120 individuals were collected, these methods provided useful insights into abundance and trends for populations of N = 100,500. At small population sizes (N = 100 or 250), precision of the Ne estimates was improved slightly more by a doubling of loci sampled than by a doubling of individuals sampled. In general, monitoring Ne proved a more robust means of identifying stable and declining populations than monitoring N over most of the parameter space we explored, and performance of the Ne estimator is further enhanced if the Ne/N ratio is low. However, at the largest population size (N = 10,000), N estimation outperformed Ne. Both methods generally required , 5 generations to pass between sampling events to correctly identify population trend. [source]


Population structure in the catfish Trichogenes longipinnis: drift offset by asymmetrical migration in a tiny geographic range

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 2 2009
KELLY R. ZAMUDIO
Based on population genetic theory and empirical studies of small populations, we expect that species with very small ranges (narrow endemics) will exhibit reduced genetic diversity, increasing their susceptibility to the negative effects of genetic homogeneity. Although this pattern of reduced diversity applies to most narrow endemics, conservation biologists have yet to identify a general pattern for the degree of spatial population genetic structure expected in species with very small ranges. In part, this is because the degree of population structure within narrow endemics will be highly variable depending on the equilibrium between the homogenizing effects of dispersal and the diversifying effects of drift and local selection in small populations, thus precluding general predictions about the relative importance of small range, small population sizes, and habitat patchiness for maintaining genetic diversity in narrowly-distributed species. We document a striking example of high population structure in the tiny geographic range of a stream-dwelling catfish, Trichogenes longipinnis, endemic to the Atlantic Forest of Brazil. The maintenance of this diversity results from a combination of asymmetrical and limited dispersal, and drift in small populations. Our results highlight the need to understand population structure, and not only overall genetic diversity, of narrowly-distributed species for their conservation planning. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 97, 259,274. [source]