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Site Selection (site + selection)
Kinds of Site Selection Selected AbstractsWater Resource Development in the Quaternary Ryukyu Limestone Regions of Japan: Application of the GIS to the Site Selection of Underground DamsACTA GEOLOGICA SINICA (ENGLISH EDITION), Issue 3 2001Kaijun JIANG Abstract Based on the natural and social conditions as well as hydrogeological characteristics of the Ryukyu limestone, a major aquifer in the Ryukyu Islands, a conception of underground dam, was proposed in the early 1970s in order to develop ground water resources in the Quaternary Ryukyu limestone regions of Japan. The practice of nearly thirty years has shown that the underground dam is an environment-friendly and effective way for developing ground water in these regions. To further improve the technology associated with underground dam, the authors introduced related analytic methods. The application of the geographical information system technology to site selection of the underground dam is reported in this paper. [source] Stratigraphic investigations at Los Buchillones, a coastal Taino site in north-central CubaGEOARCHAEOLOGY: AN INTERNATIONAL JOURNAL, Issue 5 2006Matthew C. Peros The authors present stratigraphic data from Los Buchillones, a now submerged Taino village on the north coast of central Cuba that was occupied from some time prior to A.D. 1220 until 1640 or later. Los Buchillones is one of the best-preserved sites in the Caribbean, with material culture remains that include palm thatch and wooden structural elements from some of the more than 40 collapsed structures. The purpose of this study was to investigate the environment and site-formation processes of the Taino settlement. Sediment cores were sampled from the site and its vicinity to permit integration of the geological and archaeological stratigraphies. The cores were analyzed for color, texture, mollusk content, elemental geochemistry, and mineralogy. The results of the stratigraphic work are consistent with regional sealevel data that shows relative sea level has risen gradually during the late Holocene, but has remained relatively stable since the time the Taino first occupied Los Buchillones. Of the two structures partially cleared, at least one appears to have been built over the water, supported on pilings. Site selection is likely to have resulted from a consideration of environmental factors, such as access to marine, terrestrial, and lagoonal resources, and proximity to freshwater springs. © 2006 Wiley Periodicals, Inc. [source] Potential sources of food hazards in emerging commercial aquaculture industry in sub-Saharan Africa: a case study for UgandaINTERNATIONAL JOURNAL OF FOOD SCIENCE & TECHNOLOGY, Issue 9 2009Ananias Bagumire Summary A study was conducted to assess sources of food hazards in Uganda's emerging commercial aquaculture industry based on Hazard Analysis Critical Control Point (HACCP), focusing on inputs, their sources and farm-practices on ten representative commercial farms. Critical control points (CCPs) were identified to reveal potential hazards that would jeopardise any export trade. Site selection, water quality, fertiliser, fish seed, fish rearing facilities, feeds, and post-harvest practices were the main CCPs identified. Animal manure was used to generate plankton as pond fertiliser in nine of the ten surveyed farms and veterinary drugs were not found in any of the ten farms, which is starkly different from aquaculture in indutrialised countries. Potential sources of hazards from water were mainly: municipal waste flow which was more likely on five of the ten farms, domestic waste (four farms), agricultural run-off (three farms), and low water pH (three farms). Fish fry and fingerlings from other farms, feeds formulated on-farm from unapproved sources, chemical products, uncontrolled fish predators, and domestic animal and human activities were the other potential sources of hazards. A complete application of HACCP is recommended for producing safe products that meet the strict market standards of developed countries. [source] Geographical information systems-based models for offshore floating marine fish cage aquaculture site selection in Tenerife, Canary IslandsAQUACULTURE RESEARCH, Issue 10 2005Oscar M Pérez Abstract The present study focuses on the development of a standard methodology for selection of suitable sites for offshore (exposed) marine fish-cage farming (floating cages) of seabream (Sparus aurata) and seabass (Dicentrarchus labrax) in an island environment, using Tenerife as an example. Site selection is a key factor in any aquaculture operation, affecting both success and sustainability and can solve conflicts between different activities, making a rational use of the coastal space. Site selection was achieved by using geographical information systems (GIS)-based models and related technology to support the decision-making process. The framework for spatial multicriteria decision analysis used in this study began with a recognition and definition of the decision problem. Subsequently, 31 production functions (factors and constraints) were identified, defined and subdivided into eight submodels. These were then integrated into a GIS database in the form of thematic layers and later scored for standardization. At this stage, the database was verified by field sampling to establish the quality of data used. The decision maker's preferences were incorporated into the decision model by assigning weights of relative importance to the evaluation under consideration. These, together with the thematic layers, were incorporated using multicriteria evaluation techniques and simple overlays to provide an overall assessment of possible alternatives. The integration, manipulation and presentation of the results by means of GIS-based models in this sequential and logical flow of steps proved to be very effective for helping the decision-making process of site selection. Tenerife has very favourable environmental conditions for culture of marine fish and there are no totally unsuitable sites for cage farming identified in this study. On the other hand, there are few very suitable sites (high scores) either, principally due to the heavy use of the coastline and the conflicts between different users. From the 228 km2 of available area for siting cages in the coastal regions with depth less than 50 m, the total area suitable for siting cages (scores 6,8) was 37 km2. There are only 0.51 km2 of very suitable areas (score 8) and approximately 5.37 km2 of suitable (score 7), most of these being located in the southeast of the island. These relatively small areas of suitability should be put into the context of the wider use of the coastal environment around Tenerife. [source] The use of a geographical information system for land-based aquaculture planningAQUACULTURE RESEARCH, Issue 4 2002Ian McLeod Abstract Site selection for aquaculture planning is a complex task involving the identification of areas that are economically, socially and environmentally suitable, available to aquaculture and commercially practicable. This paper reports upon a study into the use of a geographic information system (GIS) to assist in aquaculture planning. Using a case study in the site selection for land-based shrimp farming within the Australian coastal zone, we demonstrate that a GIS has potential to assist aquaculture planning. Our analysis is based on a sequential, two-stage approach. The first stage eliminates the grossly unsuitable portion of the study area through a preselection with low resolution, cheap and easily available data. The second stage then focuses on and ranks the remaining area using high resolution, possibly more expensive data. Finally, we use the GIS to present the results of the analysis in an easily accessible form. [source] Cost-Efficiency of Decaying Wood as a Surrogate for Overall Species Richness in Boreal ForestsCONSERVATION BIOLOGY, Issue 1 2006ARTTI JUUTINEN biodiversidad; gestión de bosques; indicadores de riqueza de especies; seleccion de sitios Abstract:,Decaying wood is one of the most important elements for species richness in boreal forests. We tested how well reserve selection based on the amount and quality of decaying wood results in a representation of four ecologically different taxa (beetles, birds, wood-inhabiting fungi, and vascular plants). We also compared the cost-efficiency of the use of dead-wood indicators with comprehensive species inventory. Our database included 32 seminatural old-forest stands located in northern Finland. Decaying wood was a relatively good indicator of saproxylic species but not overall species richness. Even though dead wood did not reflect accurately overall species richness, our results indicated that the use of decaying wood as an indicator in site selection was more cost-efficient than using information from large-scale species inventories. Thus, decaying wood is a valuable surrogate for species richness, but other cost-efficient indicators that reflect the requirements of those species which are not dependent on decaying wood should be identified. Resumen:,La madera en descomposición es uno de los elementos importantes para la riqueza de especies en bosques boreales. Probamos como resulta la selección de reservas con base en la cantidad y calidad de madera en descomposición en la representación de cuatro taxa ecológicamente distintos (escarabajos, aves, hongos habitantes en la madera y plantas vasculares). También comparamos la rentabilidad del uso de indicadores de madera muerta con inventarios integrales de especies. Nuestra base de datos incluyó 32 sitios de bosque maduro seminatural localizados en el norte de Finlandia. La madera en descomposición fue un indicador relativamente bueno de especies saproxílicas pero no de la riqueza total. Aunque la madera en descomposición no reflejó la riqueza total con precisión, nuestros resultados indicaron que el uso de madera en descomposición como un indicador en la selección de sitios fue más rentable que el uso de información de inventarios de especies de gran escala. Por lo tanto, la madera en descomposición es un sustituto valioso de la riqueza de especies, pero se deben identificar otros indicadores rentables que reflejen los requerimientos de aquellas especies que no dependen de la madera en descomposición. [source] Zoning Marine Protected Areas through Spatial Multiple-Criteria Analysis: the Case of the Asinara Island National Marine Reserve of ItalyCONSERVATION BIOLOGY, Issue 2 2002Ferdinando Villa Systematic, objective approaches to site selection and design can help reconcile conflicting interests, represent stakeholders' viewpoints fairly and evenly, and extend the scope of planning studies from single reserves to networks. We illustrate the use of spatial multiple-criteria analysis for determining the suitability of marine areas for different uses and levels of protection. This technique couples geographic information systems (GIS) for land assessment and evaluation with a formal statement of the design priorities as seen from the different viewpoints of all involved stakeholders. The planning process, while staying focused on the main purposes of conservation and feasibility, involves all the main interest groups in the definition of priorities so that conflicts and tensions are kept under control. We used multiple-criteria analysis to integrate objective data with the contrasting priorities of different stakeholders in the planning of a marine protected area. The results of the analysis can be used to define an optimal spatial arrangement of different protection levels. As a case study, we developed a zoning plan for one of the first marine protected areas in Italy, the Asinara Island National Marine Reserve. Resumen: Puesto que el papel de las áreas marinas protegidas está siendo mejor entendido y se está volviendo más sofisticado, la planeación para abordar eficientemente estas áreas se está volviendo más complicada para las personas que toman decisiones. Las metodologías sistemáticas y objetivas para la selección de sitios y el diseño de reservas pueden ayudar a reconciliar los conflictos de intereses, representar los puntos de vista de los usuarios de manera equitativa y balanceada y extender la dimensión de los estudios de planeación para reservas individuales o en redes. Ilustramos el uso de un análisis de criterios espaciales múltiples para determinar la viabilidad de áreas marinas para diferentes usos y niveles de protección. Esta técnica une sistemas de información geográfica (GIS) para estimación y evaluación de suelos con una declaración de prioridades de diseño tal y como es percibida por los diferentes usuarios involucrados. El proceso de planeación, al mismo tiempo que se enfoca en los propósitos principales de la conservación y en su viabilidad, involucra a los principales grupos interesados en la definición de prioridades de tal manera que los conflictos y tensiones pueden ser manejadas. Utilizamos el análisis de criterios espaciales múltiples para integrar datos objetivos con las prioridades contrastantes de los diferentes usuarios en la planeación de un área marina protegida. Los resultados del análisis pueden ser usados como una guía para definir arreglos espaciales óptimos con diferentes niveles de protección. Como caso de estudio desarrollamos un plan de desarrollo de zonificación para una de las áreas marinas protegidas de Italia, la Reserva Nacional Marina de la Isla Asinara. [source] A rapid technique for assessing the suitability of areas for invasive species applied to New Zealand's riversDIVERSITY AND DISTRIBUTIONS, Issue 2 2008Cathy Kilroy ABSTRACT Early responses to incursions of non-indigenous species (NIS) into new areas include modelling and surveillance to define the organisms' potential and actual distributions. For well-studied invasive species, predictive models can be developed based on quantitative data describing environmental tolerances. In late 2004, an invasive freshwater diatom Didymosphenia geminata, an NIS for which we had no such quantitative data, was detected in a New Zealand river. We describe a procedure used to rapidly develop a classification of suitability for all New Zealand's rivers, based on two sources of information. First, from a review of the limited available literature and unpublished data, we determined that temperature, hydrological and substrate stability, light availability, and water pH were the most important environmental gradients determining D. geminata's broad-scale distribution and capacity for establishing and forming blooms in rivers. The second information source was a GIS-based river network developed for a national classification of New Zealand's rivers, with associated data describing environmental characteristics of each section of the network. We used six variables that were available for every section of the network as surrogates for the environmental gradients that determine suitability. We then determined the environmental distance of all the river sections in the network from our assessment of the optimal conditions conducive to D. geminata blooms. The analysis suggested that > 70% of New Zealand's river sections (stream order > 3) fell into the two highest suitability categories (on a five-point scale). At the time of writing, D. geminata had spread to 12 catchments, all of which were within these two categories. The technique is applicable in initial responses to incursions of NIS where quantitative information is limited, and makes optimal use of available qualitative information. Our assessment contributed to evaluations of the potential ecological, social, and economic impacts of D. geminata and is currently being used to stratify site selection for ongoing surveillance. [source] Analysis of nest occupancy and nest reproduction in two sympatric raptors: common buzzard Buteo buteo and goshawk Accipiter gentilisECOGRAPHY, Issue 5 2002Oliver Krüger Nest site selection can have important fitness consequences in birds. I analysed the habitat characteristics of 392 nests of two sympatric raptor species (common buzzard Buteo buteo and goshawk Accipiter gentilis) in Germany and their relation to nest occupation rate and nest reproductive success. For common buzzard, multivariate models explained only small proportions of the variance in nest occupation rate and nest reproductive success (13,19%). Important variables related to nest occupation rate were human disturbances, intra- and interspecific neighbour density, the amount of forested area and nest tree crown cover. Variables related to nest site reproductive success also included human disturbance, intra- and interspecific neighbour density and nest tree crown cover as well as nest distance to the nearest forest edge. In contrast, models for the goshawk explained a much higher proportion of the variation in nest occupation rate and nest reproductive success (41,43%). Important variables related to nest occupation rate were the remoteness of the nest site and direct human disturbance. Variables related to nest site reproductive success were remoteness of the nest site and good hunting habitat. Goshawks seem to be more sensitive to human disturbance than buzzards. A multiple discriminant analysis showed that nest site characteristics substantially overlapped between the species and there is a good evidence that competition for optimal nest sites occurs. Thus, buzzards might be constrained by the dominant goshawk in their nest site selection. [source] Spawning site selection by Eurasian perch (Perca fluviatilis L.) in relation to temperature and wave exposureECOLOGY OF FRESHWATER FISH, Issue 1 2009W. N. Probst Abstract,,, The selection of spawning depth by Eurasian perch Perca fluviatilis was investigated in an experiment using artificial substrata in Lake Constance during the spawning season of 2007. The experiment compared spawning behaviour at substrata between 0.5 and 15 m depth at two sites exposed to different regimes of ship-generated wave action. The total abundance of egg ribbons did not differ significantly between the two sites, but the preferred spawning depth was deeper at the wave exposed site (5 m) compared to the sheltered site (2 m). While water temperatures could not account for the observations, differences in wave exposure may explain the different spawning depth preferences. At both sites, large egg ribbons were generally found in deeper water, and large egg ribbons occurred more frequently at the sheltered site. Because the egg ribbons of perch are likely to have a size-dependent susceptibility to hydrodynamic stress, large females may be expected to select deeper spawning locations where the effects of surface waves are considerably attenuated. [source] Functional association of human Ki-1/57 with pre-mRNA splicing eventsFEBS JOURNAL, Issue 14 2009Gustavo C. Bressan The cytoplasmic and nuclear protein Ki-1/57 was first identified in malignant cells from Hodgkin's lymphoma. Despite studies showing its phosphorylation, arginine methylation, and interaction with several regulatory proteins, the functional role of Ki-1/57 in human cells remains to be determined. Here, we investigated the relationship of Ki-1/57 with RNA functions. Through immunoprecipitation assays, we verified the association of Ki-1/57 with the endogenous splicing proteins hnRNPQ and SFRS9 in HeLa cell extracts. We also found that recombinant Ki-1/57 was able to bind to a poly-U RNA probe in electrophoretic mobility shift assays. In a classic splicing test, we showed that Ki-1/57 can modify the splicing site selection of the adenoviral E1A minigene in a dose-dependent manner. Further confocal and fluorescence microscopy analysis revealed the localization of enhanced green fluorescent protein,Ki-1/57 to nuclear bodies involved in RNA processing and or small nuclear ribonucleoprotein assembly, depending on the cellular methylation status and its N-terminal region. In summary, our findings suggest that Ki-1/57 is probably involved in cellular events related to RNA functions, such as pre-mRNA splicing. Structured digital abstract ,,MINT-7041074: Ki-1/57 (uniprotkb:Q5JVS0) physically interacts (MI:0915) with SF2P32 (uniprotkb:Q07021) by two hybrid (MI:0018) ,,MINT-7041232: Ki-1/57 (uniprotkb:Q5JVS0) physically interacts (MI:0915) with SFRS9 (uniprotkb:Q13242) by pull down (MI:0096) ,,MINT-7041203: P80-Coilin (uniprotkb:P38432) and Ki-1/57 (uniprotkb:Q5JVS0) colocalize (MI:0403) by fluorescence microscopy (MI:0416) ,,MINT-7041217: SMN (uniprotkb:Q16637) and Ki-1/57 (uniprotkb:Q5JVS0) colocalize (MI:0403) by fluorescence microscopy (MI:0416) ,,MINT-7041189: SC-35 (uniprotkb:Q01130) and Ki-1/57 (uniprotkb:Q5JVS0) colocalize (MI:0403) by fluorescence microscopy (MI:0416) ,,MINT-7041169: NPM (uniprotkb:P06748) and Ki-1/57 (uniprotkb:Q5JVS0) colocalize (MI:0403) by fluorescence microscopy (MI:0416) ,,MINT-7041249: Ki-1/57 (uniprotkb:Q5JVS0) physically interacts (MI:0915) with SFRS9 (uniprotkb:O60506) by pull down (MI:0096) ,,MINT-7041065: Ki-1/57 (uniprotkb:Q5JVS0) physically interacts (MI:0915) with SFRS9 (uniprotkb:Q13242) by two hybrid (MI:0018) ,,MINT-7041069: Ki-1/57 (uniprotkb:Q5JVS0) physically interacts (MI:0915) with YB1 (uniprotkb:P67809) by two hybrid (MI:0018) ,,MINT-7041079: Ki-1/57 (uniprotkb:Q5JVS0) physically interacts (MI:0915) with HNRPQ (uniprotkb:O60506) by two hybrid (MI:0018) ,,MINT-7041087: Ki-1/57 (uniprotkb:Q5JVS0) physically interacts (MI:0218) with HNRPQ3 (uniprotkb:O60506-1), HNRPQ2 (uniprotkb:O60506-2) and HNRPQ-1 (uniprotkb:O60506-3) by anti bait coimmunoprecipitation (MI:0006) [source] Combination of Clk family kinase and SRp75 modulates alternative splicing of Adenovirus E1AGENES TO CELLS, Issue 3 2008Jun-ichiro Yomoda SR proteins are non-snRNP splicing factors harbouring a domain rich in Arg-Ser repeats, which are extensively phosphorylated by several kinases. We performed a comparative study of different SR kinases, including SRPK, Clk, PRP4 and DYRK, and found that only Clks efficiently altered 5, splice site selection of Adenovirus E1A. The phosphorylation state of SR proteins was examined using a phospho-SR specific antibody mAb1H4 and a 75 kDa protein was most evidently hyperphosphorylated by Clks. Administration of TG003, a specific inhibitor for the Clk family members, specifically and rapidly induced dephosphorylation of 75 kDa SR protein. Imaging with mRFP-SRp75 in living cells revealed that its nuclear distribution was rapidly altered upon inhibition of the Clk activity by TG003. Co-transfection experiments demonstrated that HA-tagged SRp75 was hyperphosphorylated by Clk family members, but not by other SR kinases. These results indicate that Clks specifically hyperphosphorylate SRp75. Furthermore, SRp75 over-expression promoted the selection of 12S 5, splice site in E1A pre-mRNA, which is stimulated by co-expression of Clks. These results suggest that the specific combination of SR protein and SR kinase plays a distinct role in alternative splicing through dynamic balance of phosphorylation. [source] MIDA1 is a sequence specific DNA binding protein with novel DNA binding propertiesGENES TO CELLS, Issue 9 2000Toshiaki Inoue Background Id proteins not only regulate cell differentiation negatively, but they also promote growth and apoptosis. To know the mechanism of how Id regulates cell fate, we previously isolated an Id-associating protein, MIDA1, which positively regulates cell growth. Its predicted amino acid sequence contains tryptophan-mediated repeats (Tryp-med repeats) similar to the DNA binding region of the c-Myb oncoprotein. We determined whether MIDA1 can bind to DNA in a sequence specific manner by PCR-assisted binding site selection. Results We identified a 7-base sequence (GTCAAGC) surrounded by a 1,3 bp palindromic sequence as the DNA sequence recognized by the Tryp-med repeats of MIDA1. This motif is located within the 5,-flanking sequence of several growth regulating genes. Gel shift assays revealed that this sequence and a certain length of flanking DNA are necessary for MIDA1 to bind DNA in a stable manner. Methylation interference and DNase I footprint analysis suggested that the DNA binding of MIDA1 is resistant to DNA methylation and that MIDA1 does not specifically localize on this particular motif. Conclusions We concluded that MIDA1 is a novel sequence-specific DNA binding protein with some different properties from the usual transcription factors and that MIDA1 may act as a mediator of Id-mediated growth-promoting function through its DNA binding activity. [source] Seeing without being seen: a removal experiment with mixed flocks of Willow and Crested Tits Parus montanus and cristatusIBIS, Issue 4 2001INDRIK IS KRAMS This paper tests the hypothesis that foraging site selection reflects a trade-off between the various needs for concealment from predators, to find food, and for the individual to maintain some view of its surroundings. After removal of Crested Tits Parus cristatus (the dominant species in mixed flocks), Willow Tits P. montanus did not decrease their foraging heights as expected but remained in the most exposed parts of young pines. In contrast, after removal of Willow Tits, Crested Tits increased their foraging height from the sheltered lower canopy to sites previously occupied by Willow Tits. When flock size was reduced, the birds maintained the same high levels of vigilance without concealing themselves in dense vegetation. I suggest that flock members may benefit from foraging in sites that afford good anti-predator vigilance. [source] Biopsy site selection for endobronchial ultrasound guide-sheath transbronchial biopsy of peripheral lung lesionsINTERNAL MEDICINE JOURNAL, Issue 2 2008D. I. K. Fielding Abstract Background: Choice of biopsy method for peripheral lung lesions is usually between CT-guided fine-needle aspiration biopsy (CT FNA) and bronchoscopy. Endobronchial ultrasound guide-sheath biopsy (EBUS GS) is a new method to improve the yield of bronchoscopy. Guidance on which lesions would be appropriate for either method is needed. The aim of the study was to compare the diagnostic yields and pneumothorax rate of EBUS GS and CT FNA in terms of the location of the lesion needing biopsy, in particular, whether the lesion is touching the pleura. Methods: Prospective series of EBUS GS were compared to retrospective review of CT FNA carried out simultaneously in a large teaching hospital. Results: For EBUS GS 140 cases were carried out with mean lesion size 29 mm. Overall diagnostic sensitivity was 66%. For lesions not touching visceral pleura it was 74% compared with 35% where it was on the pleura (P < 0.01). For CT FNA 121 cases were carried out with mean lesion size 37 mm. The overall diagnostic sensitivity was 64%. Rate of pneumothorax and ICC placement in EBUS GS was 1 and 0% and in CTFNA was 28 and 6%, with P < 0.001 for both. Conclusion: Lesion location, in particular, connection to the visceral pleura, can improve decision-making in referral for either CT FNA or EBUS GS to maximize diagnostic yield and minimize pneumothorax rate. [source] Habitat structure mediates predation risk for sedentary prey: experimental tests of alternative hypothesesJOURNAL OF ANIMAL ECOLOGY, Issue 3 2009Anna D. Chalfoun Summary 1Predation is an important and ubiquitous selective force that can shape habitat preferences of prey species, but tests of alternative mechanistic hypotheses of habitat influences on predation risk are lacking. 2We studied predation risk at nest sites of a passerine bird and tested two hypotheses based on theories of predator foraging behaviour. The total-foliage hypothesis predicts that predation will decline in areas of greater overall vegetation density by impeding cues for detection by predators. The potential-prey-site hypothesis predicts that predation decreases where predators must search more unoccupied potential nest sites. 3Both observational data and results from a habitat manipulation provided clear support for the potential-prey-site hypothesis and rejection of the total-foliage hypothesis. Birds chose nest patches containing both greater total foliage and potential nest site density (which were correlated in their abundance) than at random sites, yet only potential nest site density significantly influenced nest predation risk. 4Our results therefore provided a clear and rare example of adaptive nest site selection that would have been missed had structural complexity or total vegetation density been considered alone. 5Our results also demonstrated that interactions between predator foraging success and habitat structure can be more complex than simple impedance or occlusion by vegetation. [source] Effects of age, breeding experience, mate fidelity and site fidelity on breeding performance in a declining population of Cassin's aukletsJOURNAL OF ANIMAL ECOLOGY, Issue 6 2001Peter Pyle Summary 1We examined how mate and site fidelity varied with age, experience and sex, and how age, breeding experience, mate experience, site experience and sex affected annual reproductive success and lifetime reproductive output in a declining population of Cassin's auklets (Ptychoramphusaleuticus). Our 276 study birds were 2,14 years of age, recruited at age 2,12 years, and had 0,11 years' breeding experience, 0,8 years' experience with the same mate and 0,11 years' experience in the same nest box. 2Mate fidelity was significantly greater with increasing age in males but not females. There was also a significant negative relationship between mate fidelity and breeding density (as measured by proportion of box occupancy); i.e. the lower the breeding density the higher the incidence of breeding with the same mate. 3Site fidelity showed significant linear and curvilinear increases with age that were significant in females but not males. There was also a significant negative relationship between site fidelity and breeding density; i.e. the lower the breeding density the higher the incidence of breeding at the same site. 4Previous breeding experience had no effect on either mate fidelity or site fidelity, and both mate and site fidelity were significantly lower after a breeding season was skipped. In addition, mate fidelity was significantly lower when a site was switched and vice versa. 5Lifetime reproductive output increased significantly with mate fidelity but showed no relationship with site fidelity. This suggests that fitness is optimized more through mate selection than site selection and that mate fidelity is not a by-product of site fidelity. 6Annual reproductive success showed a significant linear increase with age in males but not females, and a strong parabolic relationship with breeding experience that was significant in both sexes and significantly greater in males than females. 7These results suggest that (i) males may be more responsible for mate selection and females for site selection; (ii) improved foraging experience with age and a cost of reproduction may be more important factors in males than females; and (iii) reproductive success may be optimized by behaviour of the male rather than the female. 8Controlling for the age and experience terms of both parents, experience with a mate had a significant positive linear effect on annual reproductive success. This suggests that mate fidelity is adaptive in Cassin's auklets, and that studies examining the effects of age and experience on reproductive performance should separately consider the duration of the pair bond. 9,Controlling for all other variables, neither experience at a breeding site nor breeding density showed significant correlations with reproductive success. 10,We suggest that reductions in food supply, which correlate with reduced breeding densities, may prevent all but the highest quality breeders (those which have already established a pair bond) from reproducing, and that the increase in quality offsets the reduction in food availability. [source] Kootenai River velocities, depth, and white sturgeon spawning site selection , a mystery unraveled?JOURNAL OF APPLIED ICHTHYOLOGY, Issue 6 2009V. L. Paragamian Summary The Kootenai River white sturgeon Acipenser transmontanus population in Idaho, US and British Columbia (BC), Canada became recruitment limited shortly after Libby Dam became fully operational on the Kootenai River, Montana, USA in 1974. In the USA the species was listed under the Endangered Species Act in September of 1994. Kootenai River white sturgeon spawn within an 18-km reach in Idaho, river kilometer (rkm) 228.0,246.0. Each autumn and spring Kootenai River white sturgeon follow a ,short two-step' migration from the lower river and Kootenay Lake, BC, to staging reaches downstream of Bonners Ferry, Idaho. Initially, augmented spring flows for white sturgeon spawning were thought to be sufficient to recover the population. Spring discharge mitigation enhanced white sturgeon spawning but a series of research investigations determined that the white sturgeon were spawning over unsuitable incubation and rearing habitat (sand) and that survival of eggs and larvae was negligible. It was not known whether post-Libby Dam management had changed the habitat or if the white sturgeon were not returning to more suitable spawning substrates farther upstream. Fisheries and hydrology researchers made a team effort to determine if the spawning habitat had been changed by Libby Dam operations. Researchers modeled and compared velocities, sediment transport, and bathymetry with post-Libby Dam white sturgeon egg collection locations. Substrate coring studies confirmed cobbles and gravel substrates in most of the spawning locations but that they were buried under a meter or more of post-Libby Dam sediment. Analysis suggested that Kootenai River white sturgeon spawn in areas of highest available velocity and depths over a range of flows. Regardless of the discharge, the locations of accelerating velocities and maximum depth do not change and spawning locations remain consistent. Kootenai River white sturgeon are likely spawning in the same locations as pre-dam, but post-Libby Dam water management has reduced velocities and shear stress, thus sediment is now covering the cobbles and gravels. Although higher discharges will likely provide more suitable spawning and rearing conditions, this would be socially and politically unacceptable because it would bring the river elevation to or in excess of 537.66 m, which is flood stage. Thus, support should be given to habitat modifications incorporated into a management plan to restore suitable habitat and ensure better survival of eggs and larvae. [source] Snake activity affects seasonal variation in nest predation risk for birdsJOURNAL OF AVIAN BIOLOGY, Issue 4 2008Jinelle H. Sperry Variation in predator behavior has been proposed, but not tested, as a mechanism producing seasonal declines in avian nest success. We test this hypothesis by documenting seasonal activity of Texas ratsnakes Elaphe obsoleta and nest failure of endangered black-capped vireos Vireo atricapilla and golden-cheeked warblers Dendroica chrysoparia on which the snakes prey. Nest survival analysis was based on 880 vireo and 228 warbler nests and 3,060 snake locations from 62 radio-tracked snakes. Although nest success varied with snake activity for both birds, specific patterns differed substantially. Vireo daily nest survival was negatively correlated with snake activity over the three-year study, despite substantial variation among years in weather, and the fact that these birds are almost certainly a minor prey species of the ratsnakes. Warblers exhibited less clear-cut seasonal variation in nest success, and the association between nest success and snake activity was less pronounced than for vireos. Increased activity at warmer temperatures explained some of the seasonal change in snake movements, although mating may have accounted for a mid-season peak in activity. These results indicate that variation in predator behavior can be associated with and potentially cause seasonal changes in nest success, but also that these relationships are species specific even within the same community and may depend on aspects of the nesting ecology of the prey such as nest site selection. [source] Roosting behavior of a Neotropical migrant songbird, the northern waterthrush Seiurus noveboracensis, during the non-breeding seasonJOURNAL OF AVIAN BIOLOGY, Issue 4 2008Joseph A. M. Smith Several species of Nearctic-Neotropical migratory songbirds appear to form roosting aggregations while on their wintering grounds but little is understood about the ecology of this behavior. We studied roosting behavior and patterns of roost habitat selection in the northern waterthrush Seiurus noveboracensis, during three winter years (2002,2004) in Puerto Rico using radio telemetry. Overall, red mangrove was selected for roosting disproportionately to its availability. Regardless of diurnal habitat used, 87% (n=86) of northern waterthrush selected dense stands of coastal red mangrove for roost sites. Individuals traveled up to 2 km to access roost sites in this habitat on a daily basis. The majority (8 of 14) of individuals roosted alone, while others roosted in loose aggregations near communal roosts of gray kingbirds Tyrannus dominicensis. Patterns of roost site selection did not vary by sex. Individuals showing aggressive response to playback during the day, however, selected roost sites significantly closer to the coast. Several additional migratory and resident bird species also used red mangrove for night-time roosting habitat. Red mangrove may be a critical nocturnal roosting habitat for bird populations that live in proximity to coastal areas in the Neotropics. The benefits of nocturnal roosting behavior as well as why individuals appear to select red mangrove remain poorly understood. [source] Nest usurpation is an ,edge effect' for Carolina chickadees Poecile carolinensisJOURNAL OF AVIAN BIOLOGY, Issue 1 2002Paul F. Doherty During 1995,1997, we monitored Carolina chickadee Poecile carolinensis nests in a fragmented forest landscape in northcentral Ohio, USA. Nest success was positively correlated with woodlot area and most nest loss was due to nest destruction by house wrens Troglodytes aedon. During 1998 and 1999, we conducted an experiment in both large (>6.8 ha) and small (<6.8 ha) woodlots in which we gave chickadees a choice of nesting on edges of woodlots (preferred wren habitat) or in the center of woodlots. We found no difference in nest success between large and small woodlots, but regardless of woodlot size, nest success was lower on edges than in the center. In the experiment, 100% of nest loss was due to nest destruction by house wrens. Given a choice, Carolina chickadees preferred to nest centrally more often than on edges. These results suggest that in fragmented landscapes where house wrens are common, nest destruction by house wrens is a major cause of nest failure in the Carolina chickadee. Such edge-dependent interspecific nest-site usurpation has not been previously recognized as a potentially important selective factor in nest site selection. [source] Spatial and environmental consistency in serial sexual assaultJOURNAL OF INVESTIGATIVE PSYCHOLOGY AND OFFENDER PROFILING, Issue 1 2010Samantha Lundrigan Abstract This study examines the crime patterns of 76 New Zealand serial sexual offenders in order to determine the extent to which offenders display locational consistency in their choice of crime locations. More specifically, the hypothesis was that there would be intraseries consistency in the distances travelled (spatial consistency) and the characteristics of the crime sites selected (environmental consistency) by serial sexual offenders. For spatial consistency to be tested, the distances travelled from home to offend and the criminal range for each offence series were analysed. Support was found for spatial consistency, and, in line with much overseas research, it was also found that the offenders typically did not travel very far from home to offend (median distance of 3,km). The environmental consistency measure was made up of various physical, temporal, and contextual variables that described the environmental characteristics of an offence. As hypothesised, it was found that offenders displayed intraseries environmental consistency in offence site selection beyond the level of that expected by chance. The implications of this both for understanding offender spatial decision making and for geographical profiling are discussed. Copyright © 2009 John Wiley & Sons, Ltd. [source] Influence of water and nitrogen deficit on fruit ripening and aroma potential of Vitis vinifera L cv Sauvignon blanc in field conditionsJOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 1 2005Catherine Peyrot des Gachons Abstract S -Cysteine conjugate precursors of three volatile thiols were monitored in Vitis vinifera L cv Sauvignon blanc grapes during fruit ripening to assess the influence of vine water and nitrogen status on the grape aroma potential in field conditions. Four dry farmed plots were studied in the Pessac-Léognan and Graves appellations (Bordeaux area) in 1998, which was a very dry vintage, and in 1999, when regular summer rainfall occurred. Soil water-holding capacity ranged from very low to high. Soil total nitrogen content was related to soil organic matter content, which was highly variable on the four plots. Vine vigour was enhanced by both high water and nitrogen status. Major compounds in grapes depended mainly on vine water status. Water deficit-stressed vines produced small berries with low sugar and low total acidity. Grape aroma potential was highest in vines under mild water deficit and moderate nitrogen supply. Severe water deficit stress seemed to limit aroma potential, as did nitrogen deficiency. Consequences for site selection and irrigation management for Sauvignon blanc are discussed. Copyright © 2004 Society of Chemical Industry [source] Seasonal change in the nesting sites of Apodemus argenteusJOURNAL OF ZOOLOGY, Issue 3 2001Tsuneo Sekijima Abstract Effect of arboreal activity on nesting site selection in Apodemus argenteus was examined by using nest boxes, a footprint recording technique, and live-trapping. Although the breeding season of A. argenteus was from April to September, the use of nest boxes placed on the trunks of trees was observed only from late July to September when use of the arboreal habitat by A. argenteus became active. Nesting site selection of A. argenteus was closely associated with their spatial activity. [source] MinJ (YvjD) is a topological determinant of cell division in Bacillus subtilisMOLECULAR MICROBIOLOGY, Issue 5 2008Joyce E. Patrick Summary In Bacillus subtilis, FtsZ ring formation and cell division is favoured at the midcell because the inhibitor proteins MinC and MinD are indirectly restricted to the cell poles by the protein DivIVA. Here we identify MinJ, a topological determinant of medial FtsZ positioning that acts as an intermediary between DivIVA and MinD. Due to unrestricted MinD activity, cells mutated for minJ exhibited pleiotropic defects in homologous recombination, swarming motility and cell division. MinJ restricted MinD activity by localizing MinD to the cell poles through direct protein,protein interaction. MinJ itself localized to cell poles in a manner that was dependent on DivIVA. MinJ is conserved in other low G+C Gram-positive bacteria and may be an important component of cell division site selection in these organisms. [source] Positioning of the MinE binding site on the MinD surface suggests a plausible mechanism for activation of the Escherichia coli MinD ATPase during division site selectionMOLECULAR MICROBIOLOGY, Issue 1 2004Luyan Ma Summary Division site selection in Escherichia coli requires that the MinD protein interact with itself and with MinC and MinE. MinD is a member of the NifH-ArsA-Par-MinD subgroup of ATPases. The MinE,MinD interaction results in activation of MinD ATPase activity in the presence of membrane vesicles. The sites within MinD responsible for its interaction with MinC and MinE were studied by site-directed mutagenesis and yeast two-hybrid analysis, guided by the known three-dimensional structure of MinD proteins. This provided evidence that MinC and MinE bind to overlapping sites on the MinD surface. The results also suggested that MinE and the invariant Lys11 residue in the ATPase P-loop of MinD compete for binding to a common site within the MinD structure, thereby providing a plausible structural basis for the ability of MinE to activate the ATPase activity of MinD. [source] Astronomical site selection: on the use of satellite data for aerosol content monitoringMONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, Issue 2 2008A. M. Varela ABSTRACT The main goal of this work is to analyse new approaches to the study of the properties of astronomical sites. In particular, satellite data measuring aerosols have recently been proposed as a useful technique for site characterization and searching for new sites to host future very large telescopes. Nevertheless, these data need to be critically considered and interpreted in accordance with the spatial resolution and spectroscopic channels used. In this paper, we have explored and retrieved measurements from satellites with high spatial and temporal resolutions and concentrated on channels of astronomical interest. The selected data sets are the Ozone Monitoring Instrument on board the NASA Aura satellite and the Moderate Resolution Imaging Spectroradiometer on board the NASA Terra and Aqua satellites. A comparison of remote-sensing and in situ techniques is discussed. As a result, we find that aerosol data provided by satellites up to now are not reliable enough for aerosol site characterization, and in situ data are required. [source] A predator's perspective of nest predation: predation by red squirrels is learned, not incidentalOIKOS, Issue 5 2010Shawna A. Pelech Nest predation has been used to explain aspects of avian ecology ranging from nest site selection to population declines. Many arguments rely on specific assumptions regarding how predators find nests, yet these predatory mechanisms remain largely untested. Here we combine artificial nest experiments with behavioural observations of individual red squirrels Tamiasciurus hudsonicus to differentiate between two common hypotheses: predation is incidental versus learned. Specifically, we tested: 1) whether nest survival could be explained solely by a squirrel's activity patterns or habitat use, as predicted if predation was incidental; or 2) if predation increased as a squirrel gained experience preying on a nest, as predicted if predation was learned. We also monitored squirrel activity after predation to test for evidence of two search mechanisms: area-restricted searching and use of microhabitat search images. Contrary to incidental predation and in support of learning, squirrels did not find nests faster in areas with high use (e.g. forest edges). Instead, survival of artificial nests was strongly related to a squirrel's prior experience preying on artificial nests. Experience reduced nest survival times by over half and increased predation rates by 150,200%. Squirrels returned to and doubled their activity at the site of a previously preyed on nest. However, neither area-restricted searching nor microhabitat search images can explain how squirrels located artificial nests more readily with experience. Instead, squirrels likely used cues associated with the nests or eggs themselves. Learning implies that squirrels could be increasingly effective predators as the density or profitability of nests increases. Our results add support to the view that nest predation is complex and broadly influenced (e.g. by predator experience, motivation), and is unlikely to be predicted consistently by simple relationships with predator activity, abundance or habitat. [source] Oviposition by Lobesia botrana is stimulated by sugars detected by contact chemoreceptorsPHYSIOLOGICAL ENTOMOLOGY, Issue 1 2006Nevile Maher Abstract., The influence of glucose, fructose and sucrose on oviposition site selection by Lobesia botrana is studied by combining behavioural and electrophysiological experiments. Oviposition choice assays, using surrogate grapes treated with grape berry surface extracts of Vitis vinifera cv. Merlot at different development stages, show that L. botrana females are most stimulated by extracts of mature berries containing the highest concentrations of glucose and fructose. Choice assays reveal that the oviposition response to these sugars is dose-dependant (with a threshold of the applied solution = 10 mm and a maximum stimulation at 1 m) and that females are more sensitive to fructose than to glucose. Tarsal contact-chemoreceptor sensilla are unresponsive to stimulation with sugars but the ovipositor sensilla contain at least one neurone most sensitive to fructose and sucrose with a threshold of approximately 0.5 mm. Corresponding to the behavioural data, glucose is significantly less stimulatory to sensilla than fructose or sucrose. It is argued that fructose may be of special importance for herbivorous insects exploiting fruit as an oviposition site. [source] Standard operating procedures for clinical research personnel , part 9QUALITY ASSURANCE JOURNAL, Issue 4 2001Wendy Bohaychuk Abstract This is the ninth in a series of articles containing proposals for wording and content of standard operating procedures (SOPs) for clinical research activities conducted by sponsors and Contract Research Organisations (CROs). The procedures include those required by the International Conference on Harmonisation (ICH), the Food and Drug Administration (FDA), many other guidelines and regulations, and ,best practice' observed by the authors. The model forms require modification for actual use. In this article, SOPs are presented for the initial selection process for suitable study sites (SOP 315), study site selection visits (SOP 316), assessment of Phase I facilities (SOP 317), documentation of qualifications of investigators and other site personnel (SOP 318) and final authorisation to use a study site (SOP 319). (The full text of all 101 SOPs is available from the authors.) Copyright © 2001 John Wiley & Sons, Ltd. [source] | |||||||||||||||||||||||||||||||||||||||||||