Home About us Contact
|
Home About us Contact | ||
|
|
||
Sister Taxon (sister + taxon)
Selected AbstractsPhylogenetic Reanalysis of the Saudi Gazelle and Its Implications for ConservationCONSERVATION BIOLOGY, Issue 4 2001Robert L. Hammond The Saudi gazelle ( Gazella saudiya) was endemic to the Arabian peninsula but is now considered extinct in the wild and is potentially a candidate for captive breeding and reintroduction. Using 375 base pairs of mitochondrial DNA (mtDNA) cytochrome b gene derived from museum samples collected from the wild prior to the presumed extinction of this species, we show that G. saudiya is the sister taxon of the African dorcas gazelle ( G. dorcas). Reciprocal monophyly of G. saudiya mtDNA haplotypes with G. dorcas, coupled with morphological distinctiveness, suggests that it is an evolutionarily significant unit. These data indicate that captive populations identified previously as potential sources of G. saudiya for captive breeding appear incorrectly designated and are irrelevant to the conservation of G. saudiya. The polymerase chain reaction,restriction fragment length polymorphism ( PCR-RFLP) analysis of several private collections of living gazelles in Saudi Arabia provides no evidence for the survival of G. saudiya. We recommend that field surveys be undertaken to establish whether G. saudiya is indeed extinct in the wild and that other private collections within the Arabian peninsula be screened genetically. We urge caution when captive animals of unknown provenance are used to investigate the phylogenetics of cryptic species groups. Resumen: La identificación de poblaciones taxonómicamente apropiadas de especies en peligro para programas de reproducción en cautiverio y de reintroducción es fundamental para su éxito. La Gacela Saudi (Gazella saudiya) fue endémica a la península de Arabia pero ahora está considerada como extinta en su medio y es un candidato potencial para reproducción en cautiverio y reintroducción. Utilizando 375 pares de bases de ADN mitocondrial (ADNmt) del gene citocromo b derivados de muestras de museos colectadas en el medio silvestre antes de la extinción de la especie, mostramos que G. saudiya es el taxón hermano de la gacela dorcas africana (G. dorcas). La monofilia recíproca de haplotipos de ADNmt de G. saudiya con G. dorcas, aunado a diferencias morfológicas, sugiere que es una unidad evolutiva significativa. Estos datos indican que las poblaciones cautivas identificadas previamente como fuente potencial de G. saudiya para reproducción en cautiverio están incorrectamente identificadas y son irrelevantes para la conservación de G. saudiya. El análisis PCR-RFLP de varias colecciones privadas de gacelas vivas en Arabia Saudita no proporcionan evidencia para la supervivencia de G. saudiya. Recomendamos que se realicen muestreos en el campo para establecer si en efecto G. saudiya está extinta en su hábitat y que se examinen genéticamente las otras colecciones privadas en la península Arábiga. Recomendamos precaución cuando animales cautivos de origen desconocido son utilizados para investigar la filogenia de grupos de especies crípticas. [source] Evolution of Courtship Behaviour Patterns and Reproductive Isolation in the Desmognathus ochrophaeus ComplexETHOLOGY, Issue 5 2002Louise S. Mead The extent to which differences in courtship behaviour patterns act as mechanisms of reproductive isolation is critical to understanding both speciation and the evolution of these behaviour patterns. While numerous studies have investigated intraspecific and interspecific differences in courtship, fewer interpret results in a phylogenetic framework. We describe and analyse geographic variation in the courtship behaviour patterns of the Allegheny Dusky salamander (Desmognathus ochrophaeus). We then examine courtship among closely related species in the D. ochrophaeus complex in a phylogenetic context. We found that populations of D. ochrophaeus separated by extensive geographic distances show little variation in courtship behaviour patterns and are sexually compatible. This contrasts with significant levels of sexual isolation between D. ochrophaeus and other species in the complex. Mapping behaviour patterns onto a phylogeny that we generated from cytochrome b sequences indicates that two behaviour patterns present in the courtship sequence of other members in the complex have either been lost in D. ochrophaeus or gained independently in other species in the complex. Loss of these behaviour patterns may result in reproductive isolation between D. ochrophaeus and its sister taxon, D. orestes. [source] PHYLOGENETIC RELATIONSHIPS AND MORPHOLOGICAL DIVERSITY IN DARWIN'S FINCHES AND THEIR RELATIVESEVOLUTION, Issue 6 2002Kevin J. Burns Abstract Despite the importance of Darwin's finches to the development of evolutionary theory, the origin of the group has only recently been examined using a rigorous, phylogenetic methodology that includes many potential outgroups. Knowing the evolutionary relationships of Darwin's finches to other birds is important for understanding the context from which this adaptive radiation arose. Here we show that analysis of mitochondrial DNA sequence data from the cytochrome b gene confirm that Darwin's finches are monophyletic. In addition, many taxa previously proposed as the sister taxon to Darwin's finches can be excluded as their closest living relative. Darwin's finches are part of a well-supported monophyletic group of species, all of which build a domed nest. All but two of the non-Darwin's finches included in this clade occur on Caribbean islands and most are Caribbean endemics. These close relatives of Darwin's finches show a diversity of bill types and feeding behaviors similar to that observed among Darwin's finches themselves. Recent studies have shown that adaptive evolution in Darwin's finches occurred relatively quickly. Our data show that among the relatives of Darwin's finches, the evolution of bill diversity was also rapid and extensive. [source] On bivalve phylogeny: a high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence dataINVERTEBRATE BIOLOGY, Issue 4 2002Gonzalo Giribet Abstract. Bivalve classification has suffered in the past from the crossed-purpose discussions among paleontologists and neontologists, and many have based their proposals on single character systems. More recently, molecular biologists have investigated bivalve relationships by using only gene sequence data, ignoring paleontological and neontological data. In the present study we have compiled morphological and anatomical data with mostly new molecular evidence to provide a more stable and robust phylogenetic estimate for bivalve molluscs. The data here compiled consist of a morphological data set of 183 characters, and a molecular data set from 3 loci: 2 nuclear ribosomal genes (18S rRNA and 28S rRNA), and 1 mitochondrial coding gene (cytochrome c oxidase subunit I), totaling ,3 Kb of sequence data for 76 molluscs (62 bivalves and 14 outgroup taxa). The data have been analyzed separately and in combination by using the direct optimization method of Wheeler (1996), and they have been evaluated under 12 analytical schemes. The combined analysis supports the monophyly of bivalves, paraphyly of protobranchiate bivalves, and monophyly of Autolamellibranchiata, Pteriomorphia, Heteroconchia, Palaeoheterodonta, and Heterodonta s.l., which includes the monophyletic taxon Anomalodesmata. These analyses strongly support the conclusion that Anomalodesmata should not receive a class status, and that the heterodont orders Myoida and Veneroida are not monophyletic. Among the most stable results of the analysis are the monophyly of Palaeoheterodonta, grouping the extant trigoniids with the freshwater unionids, and the sister-group relationship of the heterodont families Astartidae and Carditidae, which together constitute the sister taxon to the remaining heterodont bivalves. Internal relationships of the main bivalve groups are discussed on the basis of node support and clade stability. [source] Australian biogeographical connections and the phylogeny of large genera in the plant family MyrtaceaeJOURNAL OF BIOGEOGRAPHY, Issue 7 2003Pauline Y. Ladiges Abstract Aim To compare the phylogeny of the eucalypt and melaleuca groups with geological events and ages of fossils to discover the time frame of clade divergences. Location Australia, New Caledonia, New Guinea, Indonesian Archipelago. Methods We compare published molecular phylogenies of the eucalypt and melaleuca groups of the plant family Myrtaceae with geological history and known fossil records from the Cretaceous and Cenozoic. Results The Australasian eucalypt group includes seven genera, of which some are relictual rain forest taxa of restricted distribution and others are species-rich and widespread in drier environments. Based on molecular and morphological data, phylogenetic analyses of the eucalypt group have identified two major clades. The monotypic Arillastrum endemic to New Caledonia is related in one clade to the more species-rich Angophora, Corymbia and Eucalyptus that dominate the sclerophyll vegetation of Australia. Based on the time of rifting of New Caledonia from eastern Gondwana and the age of fossil eucalypt pollen, we argue that this clade extends back to the Late Cretaceous. The second clade includes three relictual rain forest taxa, with Allosyncarpia from Arnhem Land the sister taxon to Eucalyptopsis of New Guinea and the eastern Indonesian archipelago, and Stockwellia from the Atherton Tableland in north-east Queensland. As monsoonal, drier conditions evolved in northern Australia, Arnhem Land was isolated from the wet tropics to the east and north during the Oligocene, segregating ancestral rain forest biota. It is argued also that the distribution of species in Eucalyptopsis and Eucalyptus subgenus Symphyomyrtus endemic in areas north of the stable edge of the Australian continent, as far as Sulawesi and the southern Philippines, is related to the geological history of south-east Asia-Australasia. Colonization (dispersal) may have been aided by rafting on micro-continental fragments, by accretion of arc terranes onto New Guinea and by land brought into closer proximity during periods of low sea-level, from the Late Miocene and Pliocene. The phylogenetic position of the few northern, non-Australian species of Eucalyptus subgenus Symphyomyrtus suggests rapid radiation in the large Australian sister group(s) during this time frame. A similar pattern, connecting Australia and New Caledonia, is emerging from phylogenetic analysis of the Melaleuca group (Beaufortia suballiance) within Myrtaceae, with Melaleuca being polyphyletic. Main conclusion The eucalypt group is an old lineage extending back to the Late Cretaceous. Differentiation of clades is related to major geological and climatic events, including rifting of New Caledonia from eastern Gondwana, development of monsoonal and drier climates, collision of the northern edge of the Australian craton with island arcs and periods of low sea level. Vicariance events involve dispersal of biota. [source] HETEROGENEITY OF THE CYANOBACTERIAL GENUS SYNECHOCYSTIS AND DESCRIPTION OF A NEW GENUS, GEMINOCYSTIS,JOURNAL OF PHYCOLOGY, Issue 4 2009Jana Korelusová The study and revision of the unicellular cyanobacterial genus Synechocystis was based on the type species S. aquatilis Sauv. and strain PCC 6803, a reference strain for this species. Uniformity in rRNA gene sequence, morphology, and ultrastructure was observed in all available Synechocystis strains, with the exception of the strain PCC 6308, which has been considered by some to be a model strain for Synechocystis. This strain differs substantially from the typical Synechocystis cluster according to both molecular (<90% of similarity, differences in 16S,23S rRNA internal transcribed spacer [ITS] secondary structure) and phenotypic criteria (different ultrastructure of cells). This strain is herein classified into the new genus Geminocystis gen. nov., as a sister taxon to the genus Cyanobacterium. Geminocystis differs from Cyanobacterium by genetic position (<94.4% of similarity) and more importantly by its different type of cell division. Because strain PCC 6308 was designated as a reference strain of the Synechocystis cluster 1 in Bergey's Manual, the members of this genetic cluster have to be revised and reclassified into Geminocystis gen. nov. Only the members of the Synechocystis cluster 2 allied with PCC 6803 correspond both genetically and phenotypically to the type species of the genus Synechocystis (S. aquatilis). [source] On the systematics of the fungus gnat subfamily Mycetophilinae (Diptera): a combined morphological and molecular approachJOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 3 2009E. Rindal Abstract The phylogenetic relationships within the fungus gnat subfamily Mycetophilinae (Diptera) are addressed using a combined morphological and molecular approach. Twenty-four species, representing nine genera of the tribe Mycetophilini and 15 genera of the tribe Exechiini, were included in the study. Analyses include nucleotide sequences of mitochondrial (cytochrome oxidase I and 16S), and nuclear (18S and 28S rDNA) genes, in addition to 65 morphological characters. A combined parsimony analysis, including all characters, supports the monophyly of the subfamily Mycetophilinae and two of its tribes, Exechiini and Mycetophilini. There is also statistical support for a Mycetophila- group and a Phronia- group within the tribe Mycetophilini. The Phronia- group includes the genera Phronia, Macrobrachius and Trichonta. The Mycetophila- group includes the genera Mycetophila, Epicypta, Platurocypta, Sceptonia and Zygomyia. A Bayesian analysis based on the nucleotide sequences alone also support these clades within Mycetophilini except for the position of Dynatosoma which is recovered as the sister taxon to the Phronia- group. A somewhat different pattern, however, is observed for the tribe Exechiini , neither molecular data nor the combined data set support unambiguously any intergeneric relationships within Exechiini. Zusammenfassung Die phylogenetischen Verwandtschaftsbeziehungen innerhalb der Pilzmücken der Unterfamilie Mycetophilinae (Diptera) wurden mit einem kombinierten morphologischen und molekularen Ansatz untersucht. Vierundzwanzig Arten aus 9 Gattungen des Tribus Mycetophilini und 15 Gattungen des Tribus Exechiini wurden in die Untersuchungen einbezogen. Die Ergebnisse einer kombinierten kladistischen Analyse von 65 morphologischen Merkmalen und den Nukleotidsequenzen der mitochondrialen Cytochrom Oxidase I und 16S Gene sowie der 18S und 28S Gene des Kerngenoms stützen die Monophylie der Unterfamilie Mycetophilinae sowie der beiden Tribus Exechiini und Mycetophilini. Weiterhin hatten die Mycetophila- und die Phronia- Gruppe innerhalb des Tribus Mycetophilini hohe statistische Unterstützung. Die Phronia- Gruppe schlie,t die Gattungen Phronia, Macrobrachius und Trichonta und die Mycetophila- Gruppe die Gattungen Mycetophila, Epicypta, Platurocypta, Sceptonia und Zygomyia ein. Die Gattung Dynatosoma gruppierte ebenso in der Mycetophila- Gruppe. Die Bayesische Analyse der Nukleotidsequenzen stützt ebenfalls die Monophylie der oben genannten Gruppen innerhalb des Tribus Mycetophilini. Ein anderes Bild ergab sich für den Tribus Exechiini. Weder die Analysen der molekularen Daten alleine noch in Kombination mit den morphologischen Daten ergaben für die einebezogenen Gattungen zweifelsfreie phylogenetische Verwandschaftsbeziehungen mit hoher statistischer Unterstützung. [source] Phylogeny of Dicranophoridae (Rotifera: Monogononta) , a maximum parsimony analysis based on morphological charactersJOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 1 2009O. Riemann Abstract This study presents the first phylogenetic analysis of Dicranophoridae (Rotifera: Monogononta), a species rich rotifer family of about 230 species currently recognized. It is based on a maximum parsimony analysis including 77 selected ingroup and three outgroup taxa and a total of 59 phylogenetically informative morphological characters. Character coding is based on personal investigation of material collected by the authors and an extensive survey of the literature. Apart from covering general body organization, character coding primarily relies on scanning electron microscopic preparations of the mastax jaw elements. Our study suggests monophyly of Dicranophoridae with a clade of Dicranophorus and Dorria as the sister taxon of all other dicranophorid species. Monophyly of Encentrum, the most species rich genus within Dicranophoridae, cannot be demonstrated. Within Dicranophoridae our study identifies the monophyletic taxa Caudosubbasifenestrata, Intramalleata, Praeuncinata and Proventriculata, each based on unambiguous character transformations evolved in their stem lineages. However, resolution within Praeuncinata and Proventriculata is very limited. Although some terminal clades within Praeuncinata and Proventriculata are recognized, basal splits remain obscure. Probably, other characters such as DNA sequence data are needed to further our understanding of phylogenetic relationships within these poorly resolved taxa. Zusammenfassung Die hier vorgelegte Studie stellt die erste phylogenetische Analyse des Taxons Dicranophoridae (Rotifera: Monogononta) dar, einer artenreichen Familie der Rotiferen mit zurzeit etwa 230 validen Arten. Die resultierenden phylogenetischen Verwandtschaftsbeziehungen fußen auf einer Maximum Parsimonie Analyse mit 77 ausgewählten Vertretern der Innen, und 3 Vertretern der Außengruppe bei insgesamt 59 Parsimonie,informativen Merkmalen. Die Kodierung der Merkmale basiert einerseits auf Material, das von den Autoren selbst gesammelt und bestimmt wurde und andererseits auf einem ausgedehnten Studium der relevanten Literatur. Neben der Erfassung von Merkmalen zur allgemeinen Körperorganisation stützt sich die Merkmalskodierung vor allem auf rasterelektronenmikroskopische Präparationen der Hartelemente des Mastax. Das Ergebnis der Analyse stützt die Monophylie der Dicranophoridae. Innerhalb der Dicranophoridae stellt ein monophyletisches Taxon, das die Gattungen Dicranophorus und Dorria umfasst, die Schwestergruppe aller übrigen Dicranophoridae dar. Die bei weitem artenreichste Gattung Encentrum lässt sich nicht als Monophylum begründen. Als monophyletische Teilgruppen innerhalb der Dicranophoridae identifiziert unsere Analyse die Taxa Caudosubbasifenestrata, Intramalleata, Praeuncinata und Proventriculata, die jeweils durch mindestens eine unzweideutige Merkmalstransformation in ihren Stammlinien begründet werden. Innerhalb der Taxa Praeuncinata und Proventriculata bietet unsere Analyse nur sehr begrenzte Auflösung. Obgleich sich einzelne Teilgruppen über unzweideutige Merkmalstransformationen als Monophyla begründen lassen, fehlen Merkmale für die Auflösung der basalen Verzweigungen innerhalb der Praeuncinata und Proventriculata. Es ist zu erwarten, dass andere Merkmalssysteme, wie zum Beispiel DNA Sequenzdaten, bei der Aufklärung der Verwandtschaftsbeziehungen innerhalb dieser Teilgruppen Klärung erbringen. [source] A phylogeny of anisopterous dragonflies (Insecta, Odonata) using mtRNA genes and mixed nucleotide/doublet modelsJOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 4 2008G. Fleck Abstract The application of mixed nucleotide/doublet substitution models has recently received attention in RNA-based phylogenetics. Within a Bayesian approach, it was shown that mixed models outperformed analyses relying on simple nucleotide models. We analysed an mt RNA data set of dragonflies representing all major lineages of Anisoptera plus outgroups, using a mixed model in a Bayesian and parsimony (MP) approach. We used a published mt 16S rRNA secondary consensus structure model and inferred consensus models for the mt 12S rRNA and tRNA valine. Secondary structure information was used to set data partitions for paired and unpaired sites on which doublet or nucleotide models were applied, respectively. Several different doublet models are currently available of which we chose the most appropriate one by a Bayes factor test. The MP reconstructions relied on recoded data for paired sites in order to account for character covariance and an application of the ratchet strategy to find most parsimonious trees. Bayesian and parsimony reconstructions are partly differently resolved, indicating sensitivity of the reconstructions to model specification. Our analyses depict a tree in which the damselfly family Lestidae is sister group to a monophyletic clade Epiophlebia + Anisoptera, contradicting recent morphological and molecular work. In Bayesian analyses, we found a deep split between Libelluloidea and a clade ,Aeshnoidea' within Anisoptera largely congruent with Tillyard's early ideas of anisopteran evolution, which had been based on evidently plesiomorphic character states. However, parsimony analysis did not support a clade ,Aeshnoidea', but instead, placed Gomphidae as sister taxon to Libelluloidea. Monophyly of Libelluloidea is only modestly supported, and many inter-family relationships within Libelluloidea do not receive substantial support in Bayesian and parsimony analyses. We checked whether high Bayesian node support was inflated owing to either: (i) wrong secondary consensus structures; (ii) under-sampling of the MCMC process, thereby missing other local maxima; or (iii) unrealistic prior assumptions on topologies or branch lengths. We found that different consensus structure models exert strong influence on the reconstruction, which demonstrates the importance of taxon-specific realistic secondary structure models in RNA phylogenetics. [source] Systematic position of the pelagic Thecosomata and Gymnosomata within Opisthobranchia (Mollusca, Gastropoda) , revival of the PteropodaJOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 2 2006A. Klussmann-Kolb Abstract The complete 18S (SSU) rRNA as well partial 28S (LSU) rRNA and partial mitochondrial COI sequences have been used to reconstruct the phylogenetic relationships within Opisthobranchia with special focus on the pelagic orders Thecosomata and Gymnosomata. Maximum parsimony, maximum likelihood, distance as well as Bayesian analysis of a combined dataset of the three genes reveals that Thecosomata and Gymnosomata are sister groups and together are closely related to Anaspidea. Possible sister taxon to Thecosomata, Gymnosomata and Anaspidea is Cephalaspidea s. str. Analysis of a taxon-extended dataset of partial 28S sequences supported a basal position of Limacina within Euthecosomata. Within Cavolinidae, Creseis is basal to the other taxa. Other phylogenetic implications from the present results are also discussed. Investigation of the morphology and histology of Thecosomata and Gymnosomata as well as several other opisthobranch taxa helped to identify autapomorphies for Thecosomata and Gymnosomata as well as apomorphies for the clades including these taxa. Zusammenfassung Auf Basis der kompletten 18S rRNA- und partiellen 28S rRNA- sowie partiellen COI- Sequenzen wurde die Phylogenie der Opisthobranchia unter besonderer Berücksichtigung der pelagischen Thecosomata und Gymnosomata rekonstruiert. Maximum Parsimonie-, Maximum Likelihood- sowie Distanz- Berechnungen und Bayes'sche Analysen zeigen, dass die Thecosomata und Gymnosomata Schwestergruppen und nah verwandt mit den Anaspidea sind. Die potentielle Schwestergruppe zu Thecosomata, Gymnosomata und Anaspidea sind die Cephalaspidea s. str. Die Analyse eines taxonerweiterten Datensatzes von partiellen 28S rRNA-Sequenzen unterstützt die basale Position von Limacina innerhalb der Euthecosomata. Innerhalb der Cavolinidae stellt Creseis das basalste Taxon dar. Weitere Schlussfolgerungen zu phylogenetischen Verwandtschaftsverhältnissen der Opisthobranchia auf Grundlage der vorliegenden Untersuchungen werden diskutiert. Die Untersuchungen der Morphologie und Histologie der Thecosomata und Gymnosomata sowie anderer Opisthobranchia ließen apomorphe Merkmale der Thecosomata und Gymnosomata sowie Apomorphien der Kladen, die diese beiden pelagischen Taxa enthalten, erkennen. [source] Chordate phylogeny and evolution: a not so simple three-taxon problemJOURNAL OF ZOOLOGY, Issue 2 2008T. Stach Abstract Traditional concepts of chordate phylogeny have recently been in turmoil: in a large-scale molecular study, the traditional hypothesis that cephalochordates are sister taxon to craniates was replaced by the hypothesis of a sister group relationship between tunicates and craniates. It was claimed that the morphological evidence that supported traditional phylogeny was weak and that morphological characters at least equally strong could be mustered in support of the ,new phylogeny.' In the present review, it is shown that the uncritical use of published codings of morphological characters in recent phylogenetic analyses is responsible for this perception. To ameliorate this situation, the main focus of the present publication is a review of the morphological evidence that has been deemed relevant in chordate phylogeny. Characters are presented in enough detail to allow readers to make self-reliant informed decisions on character coding. I then analyze these characters cladistically, and it is demonstrated that support of the traditional hypothesis is substantial. I briefly evaluate molecular systematic studies and criticize ,evo-devo' studies for lack of cladistic rigor in the evolutionary interpretations of their data by (1) failing to formally code their characters (2) failing to subject their data to the congruence test with other characters, the crucial test in phylogenetic analyses. Finally, a short and by necessity eclectic discussion of suggested evolutionary scenarios is presented. [source] Continental speciation in the tropics: contrasting biogeographic patterns of divergence in the Uroplatus leaf-tailed gecko radiation of MadagascarJOURNAL OF ZOOLOGY, Issue 4 2008C. J. Raxworthy Abstract A fundamental expectation of vicariance biogeography is for contemporary cladogenesis to produce spatial congruence between speciating sympatric clades. The Uroplatus leaf-tailed geckos represent one of most spectacular reptile radiations endemic to the continental island of Madagascar, and thus serve as an excellent group for examining patterns of continental speciation within this large and comparatively isolated tropical system. Here we present the first phylogeny that includes complete taxonomic sampling for the group, and is based on morphology and molecular (mitochondrial and nuclear DNA) data. This study includes all described species, and we also include data for eight new species. We find novel outgroup relationships for Uroplatus and find strongest support for Paroedura as its sister taxon. Uroplatus is estimated to have initially diverged during the mid-Tertiary in Madagascar, and includes two major speciose radiations exhibiting extensive spatial overlap and estimated contemporary periods of speciation. All sister species are either allopatric or parapatric. However, we found no evidence for biogeographic congruence between these sympatric clades, and dispersal events are prevalent in the dispersal,vicariance biogeographic analyses, which we estimate to date to the Miocene. One sister-species pair exhibits isolated distributions that we interpret as biogeographic relicts, and two sister-species pairs have parapatric distributions separated by elevation. Integrating ecological niche models with our phylogenetic results finds both conserved and divergent niches between sister species. We also found substantial intra-specific genetic variation, and for the three most widespread species, poor intra-specific predictive performance for ecological niche models across the latitudinal span of Madagascar. These latter results indicate the potential for intra-specific niche specialization along environmental gradients, and more generally, this study suggests a complex speciation history for this group in Madagascar, which appears to include multiple speciation processes. [source] A new species of spitting cobra (Naja) from north-eastern Africa (Serpentes: Elapidae)JOURNAL OF ZOOLOGY, Issue 4 2003Wolfgang Wüster Abstract A new species of spitting cobra Naja nubiae sp. nov. is described from north-eastern Africa. The distinctiveness of the new species is confirmed by multivariate analysis of pattern and scalation data. Phylogenetic analysis of mitochondrial DNA sequences reveals the new species to be the sister taxon of N. pallida, but with considerable levels of sequence divergence relative to that species. The populations concerned had previously been assigned to N. pallida. The new species differs from N. pallida principally in having more than one dark band across the neck and under the throat, as well as a pair of spots under the throat. It occupies a disjunct range across Egypt, the Sudan, Chad, Niger and Eritrea, where it seems to occupy primarily relatively mesic habitats. Naja mossambica is more closely related to N. nigricollis than to N. pallida and the new species. A key to the African species of Naja is presented. [source] A new taxon of phytosaur (Archosauria: Pseudosuchia) from the Late Triassic (Norian) Sonsela Member (Chinle Formation) in Arizona, and a critical reevaluation of Leptosuchus Case, 1922PALAEONTOLOGY, Issue 5 2010MICHELLE R. STOCKER Abstract:,Leptosuchus Case, 1922 (Reptilia: Phytosauria) from the Late Triassic of the American West is represented by many specimens. Here, I present complete morphological descriptions of the skull material of a new taxon from the Sonsela Member (Chinle Formation) of Petrified Forest National Park, Arizona, with the first rigorous phylogenetic analysis focused on the interrelationships of Leptosuchus. The new taxon is recovered as the sister taxon to Pseudopalatinae. It possesses one unambiguous synapomorphy (the ,septomaxillae' form part of the lateral borders of the nares) and shares the presence of a subsidiary opisthotic process with Pseudopalatinae. The new taxon does not fall within the restricted clade Leptosuchus. In my analysis, the previously proposed, but undemonstrated, sister taxon relationship between Angistorhinus and Rutiodon is not supported, Paleorhinus is recovered as paraphyletic, and a subset of taxa traditionally included within Leptosuchus are found to be more closely related to Pseudopalatinae, rendering Leptosuchus paraphyletic. ,Leptosuchus'adamanensis emerges as sister taxon to Smilosuchus gregorii and is here referred to as Smilosuchus adamanensis nov. comb., and ,Machaeroprosopus'lithodendrorum is also transferred to Smilosuchus lithodendrorum nov. comb. Documentation of the variation present within Phytosauria, and specifically within Leptosuchus sensu lato, demonstrates higher diversity within Phytosauria than previously appreciated and places the character states previously proposed for Pseudopalatinae into a broader context of shared characters. [source] THE TAXONOMIC AND PHYLOGENETIC POSITION OF THE PLESIOSAUROIDEA FROM THE LOWER JURASSIC POSIDONIA SHALE OF SOUTH-WEST GERMANYPALAEONTOLOGY, Issue 3 2007FRANZISKA GROßMANNArticle first published online: 17 MAY 200 Abstract:, The two plesiosauroid species from the Posidonia shale of Holzmaden, ,Plesiosaurus'guilelmiimperatoris and ,Plesiosaurus'brachypterygius, do not belong to Plesiosaurus but form new monotypic genera. The new genus Hydrorion is erected for ,P.'brachypterygius, and the genus Seeleyosaurus is re-established for ,P.'guilelmiimperatoris. The recently described species Plesiopterys wildii is regarded as a junior synonym of S. guilelmiimperatoris. A short phylogenetic analysis shows that S. guilelmiimperatoris and Muraenosaurus are basal elasmosaurs. H. brachypterygius, Occitanosaurus tournemirensis from France and Microcleidus homalospondylus from England form a monophyletic clade, which is the sister taxon to the Cretaceous elasmosaurs. A palaeobiogeographical comparison of plesiosaur localities in the Lower Jurassic shows distinct palaeobiogeographical zones for the Toarcian, with different plesiosaur taxa in England, Germany and France. [source] The origin of chalicotheres (Perissodactyla, Mammalia)PALAEONTOLOGY, Issue 6 2004J. J. Hooker Description of a new genus of perissodactyl, Protomoropus, for the species ,Hyracotherium'gabuniai Dashzeveg and its inclusion with a diversity of other primitive perissodactyls in a cladistic analysis results in the following higher order changes to our knowledge of perissodactyl phylogeny. Protomoropus is sister taxon to the Chalicotheriidae plus Lophiodontidae, which themselves are confirmed as sister groups. The previously monofamilial superfamily Chalicotherioidea is extended to include all three taxa. Paleomoropus and Lophiaspis are shown to be primitive lophiodontids. Various genera of the Isectolophidae are shown to be stem members of a clade that includes chalicotheres and lophiodonts. The infraorder Ancylopoda is extended to include them. Inclusion of isectolophids in the Ancylopoda rather than as stem tapiromorphs results in the break up of the clade Tapiromorpha. Instead, the modern perissodactyl groups, comprising the horse superfamily Equoidea and that of the rhinos and tapirs, the Ceratomorpha (here reduced in rank to parvorder), form a new clade which is here named infraorder Euperissodactyla nov. The Brontotheriidae form the sister group to Ancylopoda plus Euperissodactyla. The clade comprising Ancylopoda plus Euperissodactyla is named suborder Lophodontomorpha nov. The Chalicotherioidea and Chalicotheriidae evolved in Asia. The Lophiodontidae arose following dispersal from Asia to North America. Dispersal continued to Europe, where the family radiated. [source] A Reappraisal Of Coletta Seca, A Basal Procolophonoid Reptile From The Lower Triassic Of South AfricaPALAEONTOLOGY, Issue 5 2002Sean P. Modesto The skeletal structure of Coletta seca, a small procolophonoid reptile from the Lower Triassic Lystrosaurus Assemblage Zone of South Africa, is reconsidered in light of descriptions of other procolophonoids. The presence of a single row of relatively large, fang,like vomerine teeth, identified originally as the single autapomorphy of this taxon, is reinterpreted as two rows of parachoanal vomerine teeth that are similar in organization to those of coeval procolophonids from Russia. Coletta is distinguished from other procolophonoids by a complex tongue,and,groove suture between the anterolateral margin of the parietal and the posterolateral edge of the postfrontal, and by a transversely broad interpterygoid vacuity. The postfrontal in Coletta retains contact with the postorbital, as in basal taxa such as Owenetta, but it is restricted to the orbital margin, as in Procolophon and all other procolophonids. A phylogenetic analysis identifies Coletta as the sister taxon of the clade Procolophonidae. This phylogenetic position suggests that Procolophonoidea originated and diversified initially in Gondwana during the Permian, prior to Procolophonidae achieving a cosmopolitan distribution in the succeeding Triassic. [source] A New Species Of The Late Triassic Rhynchosaur Hyperodapedon From The Santa Maria Formation Of South BrazilPALAEONTOLOGY, Issue 4 2000Max C. Langer A new rhynchosaur, Hyperodapedon huenei sp. nov., is described from the Upper Triassic Santa Maria Formation of the Paraná Basin, Brazil. The holotype is an almost complete skull and mandible, collected at Inhamandá, in the state of Rio Grande do Sul, Brazil. The diagnosis of the genus Hyperodapedon Huxley is revised to include not only H. huxleyi Lydekker and H. gordoni Huxley (as generally accepted), but also the new species described here, various specimens usually assigned to ,Scaphonyx fischeri' Woodward, and ,S'. sanjuanensis Sill. H. huenei sp. nov. exhibits a number of plesiomorphic features and appears to be the least derived species of Hyperodapedon, forming a sister taxon to the remaining members of the genus. A preliminary phylogenetic analysis for the more derived rhynchosaurs is presented. ,Scaphonyx'sulcognathus Azevedo and Schultz represents the sister taxon of Hyperodapedon, while ,Rhynchosaurus'spenceri Benton is considered to be a more derived Middle Triassic rhynchosaur. key words: Rhynchosauria, Hyperodapedon, Triassic, Brazil. [source] Establishment of Liebermannia dichroplusae n. comb. on the Basis of Molecular Characterization of Perezia dichroplusae Lange, 1987 (Microsporidia)THE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 3 2007YULIYA Y. SOKOLOVA ABSTRACT. Perezia dichroplusae Lange, 1987 is a parasite of the Malpighian tubules of an Argentine grasshopper, Dichroplus elongatus (Orthoptera, Acrididae, Melanoplinae). In order to determine relationships of this microsporidium with Perezia nelsoni and with other microsporidia, we sequenced its small subunit ribosomal RNA gene (SSU rDNA) (GenBank Accession No. EF016249) and performed phylogenetic analysis of the novel sequence against 17 microsporidian SSU rDNA sequences from GenBank, using neighbor-joining (NJ), maximum-parsimony (MP), and maximum-likelihood (ML) methods. This analysis revealed the highest similarity (96%) of the new sequence to Liebermannia patagonica, a parasite of gut epithelium cells of another grasshopper from Argentina, versus only 65% similarity to P. nelsoni, a parasite of muscles of paenaeid shrimps. In phylogenetic trees inferred from SSU rDNA sequences, the microsporidium from D. elongatus is sister taxon to L. patagonica and both cluster with Orthosomella operophterae. At the higher hierarchical level, the Liebermania,Orthosomella branch forms a clade with the Endoreticulatus,Cystosporogenus,Vittaforma group and with Enterocytozoon bieneusi. Perezia nelsoni falls into another large clade together with Nosema and Ameson species. We propose transferring P. dichroplusae to the genus Liebermannia and creating a new combination Liebermannia dichroplusae n. comb., based both on SSU rDNA sequence analysis and on common characters between P. dichroplusae and L. patagonica, which include the presence of elongated multinuclear sporonts, sporoblastogenesis by a similar process of sequentially splitting off sporoblasts, ovocylindrical spores of variable size, tissue tropism limited to epithelial cells, Orthoptera as hosts, and geographical distribution of hosts in the southern temperate region of Argentina. We argue that the condition of the nuclei in spores (i.e. diplokaryotic in L. patagonica or monokaryotic in L. dichroplusae) cannot be used to distinguish genera. Therefore, we remove the statement about the presence of diplokaryotic spores from the revised diagnosis of the genus Liebermannia. [source] The complete mitochondrial genome of the domestic red deer (Cervus elaphus) of New Zealand and its phylogenic position within the family CervidaeANIMAL SCIENCE JOURNAL, Issue 5 2010Kenta WADA ABSTRACT We determined the complete nucleotide sequence of the mitochondrial genome of the semidomestic red deer (Cervus elaphus) of New Zealand. The genome was 16 357 bp long and contained 13 protein-coding genes, 12SrRNA, 16SrRNA, 22 tRNAs and a D-loop as found in other mammals. Database homology searches showed that the mitochondrial DNA (mtDNA) sequence from the New Zealand semidomestic deer was similar to partial mtDNA sequences from the European, Norwegian (C. e. atlanticus) and Spanish red deer (C. e. hispanicus). Phylogenetic analysis of the mitochondrial protein-coding regions revealed two well-defined monophyletic clades in subfamilies Cervinae and Muntiacinae. However, red deer and Sika deer were not found to be close relatives. The analysis did identify the red deer as a sister taxon of a Samber/Sika deer clade, although it was more closely related to the Samber than the Sika group. [source] A global phylogeny of apple snails: Gondwanan origin, generic relationships, and the influence of outgroup choice (Caenogastropoda: Ampullariidae)BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 1 2009KENNETH A. HAYES Apple snails (Ampullariidae) are a diverse family of pantropical freshwater snails and an important evolutionary link to the common ancestor of the largest group of living gastropods, the Caenogastropoda. A clear understanding of relationships within the Ampullariidae, and identification of their sister taxon, is therefore important for interpreting gastropod evolution in general. Unfortunately, the overall pattern has been clouded by confused systematics within the family and equivocal results regarding the family's sister group relationships. To clarify the relationships among ampullariid genera and to evaluate the influence of including or excluding possible sister taxa, we used data from five genes, three nuclear and two mitochondrial, from representatives of all nine extant ampullariid genera, and species of Viviparidae, Cyclophoridae, and Campanilidae, to reconstruct the phylogeny of apple snails, and determine their affinities to these possible sister groups. The results obtained indicate that the Old and New World ampullariids are reciprocally monophyletic with probable Gondwanan origins. All four Old World genera, Afropomus, Saulea, Pila, and Lanistes, were recovered as monophyletic, but only Asolene, Felipponea, and Pomella were monophyletic among the five New World genera, with Marisa paraphyletic and Pomacea polyphyletic. Estimates of divergence times among New World taxa suggest that diversification began shortly after the separation of Africa and South America and has probably been influenced by hydrogeological events over the last 90 Myr. The sister group of the Ampullariidae remains unresolved, but analyses omitting certain outgroup taxa suggest the need for dense taxonomic sampling to increase phylogenetic accuracy within the ingroup. The results obtained also indicate that defining the sister group of the Ampullariidae and clarifying relationships among basal caenogastropods will require increased taxon sampling within these four families, and synthesis of both morphological and molecular data. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 98, 61,76. [source] A New Genus of Psittacosauridae (Dinosauria: Ornithopoda) and the Origin and Early Evolution of Marginocephalian DinosaursACTA GEOLOGICA SINICA (ENGLISH EDITION), Issue 1 2003YOU Hailu Abstract, An almost complete juvenile dinosaur skull with lower jaw was discovered from the Early Cretaceous Yixian Formation in Beipiao, Liaoning Province, China. Here, the specimen is described and a cladistic analysis is performed in order to find its phylogenetic relationships. The result shows that this specimen represents a new genus of Psittacosauridae, Hongshanosaurus houi, gen. et sp. nov., and confirms the monophyletic status for Ceratopsia and Marginocephalia. However, Heterodontosaurus is found to be the sister taxon to Marginocephalia, rather than a basal Ornithopoda. [source] Evolutionary morphology of the circulatory system in Peracarida (Malacostraca; Crustacea)CLADISTICS, Issue 2 2010Christian S. Wirkner We demonstrate that by formulating guidelines for evolutionary morphology the transparency, reproducibility, and intersubject testability of evolutionary hypotheses based on morphological data can be enhanced. The five main steps in our concept of evolutionary morphology are (i) taxon sampling, (ii) structural analysis, (iii) character conceptualization, (iv) phylogenetic analysis, and (v) evolutionary interpretation. We illustrate this concept on the example of the morphology of the circulatory organs in peracarid Malacostraca. The analysis is based on recently published accounts in which detailed structural analyses were carried out, and on the older literature. Detailed conceptualizations of 22 characters of the circulatory system are given for 28 terminals. In a further step these characters are included in a recently revised matrix, resulting in 110 characters. The resulting parsimony analysis yielded a single most parsimonious tree with a length of 309 steps. The most significant results are that Peracarida is monophyletic, Amphipoda is the sister taxon to the Mancoida sensu stricto, the relict cave-dwelling taxa Thermosbaenacea, Spelaeogriphacea, and Mictocarididae form a monophylum and Tanaidacea is the sister group to a monophylum comprising Cumacea and Isopoda. The evolutionary analysis shows that the ground pattern features of the circulatory organs in Peracarida are a tubular heart extending through the whole thorax, a posterior aorta with lateral arteries, and a ventral vessel system. Important features within the Peracarida are the backward shift of the anterior border of the heart, the reduction of the ventral vessel system, and two patterns of cardiac arteries, one common to the amphipod and tanaidacean terminals, and one to the cumacean and isopod terminals. ,© The Willi Hennig Society 2009. [source] | |||||||||||||||||||||||||