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Sink
Kinds of Sink Terms modified by Sink Selected AbstractsNOSTOC (CYANOPHYCEAE) GOES NUDE: EXTRACELLULAR POLYSACCHARIDES SERVE AS A SINK FOR REDUCING POWER UNDER UNBALANCED C/N METABOLISM,JOURNAL OF PHYCOLOGY, Issue 1 2004Ana Otero Many species of the filamentous N2 -fixing heterocyst-forming Cyanobacteria of the genus Nostoc produce large amounts of extracellular polymeric substances (EPS), but hitherto no general model has been proposed of the factors that control their synthesis. Previously, we demonstrated a strong correlation between the presence of a glycocalyx (or EPS capsule) and diazotrophic growth in the genus Nostoc. When grown with nitrate, nude morphotypes lacking a glycocalyx were obtained for all the capsulated strains tested. CO2 availability was pro-posed as a key factor that controls the synthesis of the capsule. To test this hypothesis, Nostoc PCC 7936 was cultured diazotrophically (N2) or with nitrate with different CO2 supplies. By tuning the pH and the supply of CO2, capsulated or nude mor-photypes were obtained irrespective of the source of nitrogen. Exocellular polysaccharides were synthesized only when the fixed carbon exceeded the amount of nitrogen available. The glycocalyx is not needed for the optimal functioning of nitrogenase because diazotrophic cultures grew equally well, irrespective of whether they were capsulated or nude. Capsulated cultures possessed protein to carbohydrate ratios that ranged between 1 and 1.5, whereas in nude cultures the ratio ranged between 2 and 2.5. Low protein to carbohydrate ratios were indicative for either nitrogen-limited or carbon-oversaturated cultures. The results demonstrate that in Nostoc EPS serve as a sink for the excess fixed carbon under unbalanced C/N metabolism. [source] The Late Prehistoric,Early Historic Game Sink in the Northwestern United StatesCONSERVATION BIOLOGY, Issue 1 2002R. Lee Lyman The number of big game killed by the Corps of Discovery in 1805,1806 and recorded by Lewis and Clark suggests that ungulates were abundant in central and eastern Montana and rare in western Montana, central Idaho, and southeastern Washington during the early nineteenth century. Paleoecologists Paul Martin and Chris Szuter conclude that this difference was a function of human predation. They support their conclusion that ungulates would have been abundant in southeastern Washington had humans not hunted them by arguing that the nineteenth-century livestock industry was successful without supplemental feeding. The livestock industry was, however, not consistently successful until artificial feeding was initiated. Archaeological data from eastern Washington indicate that ungulates have been taken by human hunters more frequently than small-mammal prey throughout the last 10,000 years and that ungulates decreased relative to small mammals coincident with changes in climate. Bison ( Bison bison) and elk (Cervus canadensis) were present in eastern Washington throughout the Holocene, but bison were abundant there only during a cooler and moister period; elk have been abundant only in the twentieth century, subsequent to transplants and the extermination of predators. Geographic variation in the abundance of bison across Montana, Idaho, and eastern Washington has been influenced by human predation but has also been influenced by biogeographic history, habitat differences, and climatic change. Resumen: Los datos históricos proveen información valiosa sobre las estructuras de los ecosistemas, sus funciones y procesos. El número de animales de caza grandes que fueron sacrificados por las tropas de descubrimiento en 1805-1806 y registradas por Lewis y Clark sugieren que los ungulados eran abundantes en Montana central y oriental y raros en Montana occidental, Idaho central y el sudeste de Washington durante los inicios del siglo diecinueve. Los paleontólogos Paul Martin y Chris Szuter concluyen que esta diferencia fue causada por la depredación humana. Ellos apoyan su conclusión de que los ungulados podrían haber sido abundantes en el sudeste de Washington si los humanos no los hubieran cazado argumentando que la industria de la ganadería del siglo diecinueve exitosa sin alimento suplementario. Sin embargo, la industria de la ganadería no fue consistentemente exitosa hasta que se inició la alimentación artificial. Los datos arqueológicos de Washington oriental indican que los ungulados fueron eliminados por los cazadores humanos mas frecuentemente que las presas pequeñas de mamíferos a lo largo de los últimos 10,000 años y que la disminución de ungulados, relativa a la de mamíferos pequeños coincidió con cambios en el clima. El bisonte (Bison bison) y el alce (Cervus canadiensis) estuvieron presentes en Washington oriental a lo largo del Holoceno, pero los bisontes fueron abundantes solo durante un periodo mas frío y húmedo; los alces habían sido abundantes solo en el siglo veinte subsecuente a los transplantes y a la exterminación de los depredadores. La variación en la abundancia de alces a lo largo de Montana, Idaho y el oriente de Washington estuvo influenciada por la depredación humana, pero también por la historia biogeográfica, las diferencias en hábitat y el cambio climático. [source] A Comparison of Four Mohs Tissue Preparation Methods Using Porcine SkinDERMATOLOGIC SURGERY, Issue 9 2010FRCPC, WILLIAM LEAR MD OBJECTIVE Mohs surgery relies on high-quality, rapid tissue preparation and processing. This study evaluated four currently performed tissue preparation and processing methods for speed of processing and depth of cut into the tissue block to achieve a complete high-quality section. METHODS The following four methods were tested: cryoEMBEDDER, float, heat sink, and slide. Standardized specimens of porcine skin were used to ensure uniformity. We measured the time required for a technician to flatten, embed, and cut to the first complete section of each specimen. Additionally, we measured the depth in microns required to cut into an embedded specimen to achieve a complete section. RESULTS There were advantages and disadvantages of each method, and our findings suggest that the heat sink and float methods are more time efficient but that the slide and cryoEMBEDDER methods require less cutting into the specimen to obtain a complete section. The cryoEMBEDDER device used in this study was loaned by cryoEMBEDDER (Salt Lake City, Utah). [source] The clinical pharmacology of therapeutic monoclonal antibodiesDRUG DEVELOPMENT RESEARCH, Issue 3 2004Lorin K. Roskos Abstract Seventeen monoclonal antibodies are currently approved in the United States for therapeutic use in organ transplantation, percutaneous coronary intervention, prophylaxis of respiratory syncytial virus disease, rheumatoid arthritis, Crohn's disease, asthma, chronic lymphocytic leukemia, acute myeloid leukemia, non-Hodgkin's lymphoma, breast cancer, and colorectal cancer. All approved antibodies are of the IgG class. Thirteen are unconjugated intact antibodies, three are intact immunoconjugates, and one is a Fab fragment. Three of the antibodies are murine, five are chimeric, eight are humanized, and one is a fully human antibody generated by phage display technology. The antigen target and the structural and binding characteristics of the antibody determine the antibody's mechanism of action, pharmacokinetics, safety, and immunogenicity. Antibodies act through multiple mechanisms that include functional modulation of the antigen, recruitment of ADCC and CDC, and delivery of radionuclide or toxin payloads to target cells. Antibody half-life is usually governed by interaction with the FcRn receptor. In some cases, the antigen may act as a sink for antibody elimination. Safety profiles are determined by the pharmacology and tissue distribution of the target antigen, antibody isotype, the antibody payload, cytokine release, hypersensitivity reactions to xenogeneic protein, and immunogenicity. Fully human antibody technology may allow development of antibodies that have reduced risks of hypersensitivity reactions and immunogenicity, thereby enhancing safety and efficacy. The exquisite target specificity of antibodies, improvements in antibody engineering technology, and the wide availability of novel and validated therapeutic targets provide many current and future opportunities for the clinical development of therapeutic antibodies. Drug Dev. Res. 61:108,120, 2004. © 2004 Wiley-Liss, Inc. [source] Contribution to understanding the historical evolution of meandering rivers using dendrochronological methods: example of the Ma,a Panew River in southern PolandEARTH SURFACE PROCESSES AND LANDFORMS, Issue 10 2006Ireneusz Malik Abstract The Ma,a Panew is a meandering river that flows 20 km through a closed forest. During times of high discharge the riverbed and floodplain are transformed under the influence of riparian trees. The changes provide the opportunity to measure the intensity of erosion and sediment accumulation based on tree ages, the dating of coarse woody debris (CWD) in the riverbed, and the dating of eccentric growth of tilting trees and exposed roots. The bed and floodplain in reaches of the Ma,a Panew River with low banks were greatly altered as a result of long periods of flooding between 1960 and 1975. Banks were undercut during these floods and black alders tilted. Those parts of alder crowns or stems which tilt and sink generate small sand shadows. When erosion is intensive alder clumps are undercut from concave banks and become mid-channel islands, while on the other side of the channel meandering bar levels are created. The reaches with higher banks were altered by large floods, especially in 1985 and 1997. The concave banks are undercut and sediment with CWD is deposited within the riverbed, forming sand shadows behind the CWD. Copyright © 2006 John Wiley & Sons, Ltd. [source] Using Rock-Eval 6 pyrolysis for tracking fossil organic carbon in modern environments: implications for the roles of erosion and weatheringEARTH SURFACE PROCESSES AND LANDFORMS, Issue 2 2006Yoann Copard Abstract This work relates to the debate on the fossil organic carbon (FOC) input in modern environments and its possible implication for the carbon cycle, and suggests the use of Rock-Eval 6 pyrolysis as a relevant tool for tracking FOC in such environments. Considering that such a delivery is mainly due to supergene processes affecting the continental surface, we studied organic matter in different reservoirs such as bedrocks, alterites, soils and rivers in two experimental catchments at Draix (Alpes de Haute Provence, France). Samples were subjected to geochemical (Rock-Eval 6 pyrolysis) investigations and artificial bacterial degradations. After comparing the geochemical fingerprint of samples, geochemical markers of FOC were defined and tracked in the different reservoirs. Our results confirm the contribution of FOC in modern soils and rivers and display the various influences of weathering and erosional processes on the fate of FOC during its exchange between these pools. In addition, the contrasting behaviour of these markers upon the supergene processes has also highlighted the refractory or labile characters of the fossil organic matter (FOM). Bedrock to river fluxes, controlled by gully erosion, are characterized by a qualitative and quantitative preservation of FOM. Bedrock to alterite fluxes, governed by chemical weathering, are characterized by FOC mineralization without qualitative changes in deeper alterites. Alterite to soils fluxes, controlled by (bio)chemical weathering, are characterized by strong FOC mineralization and qualitative changes of FOM. Thus weathering and erosional processes induce different FOM evolution and affect the fate of FOC towards the global carbon cycle. In this study, gully erosion would involve maintenance of an ancient sink for the global carbon cycle, while (bio)chemical processes provide a source of CO2. Finally, this study suggests that Rock-Eval 6 pyrolysis can be considered as a relevant tool for tracking FOC in modern environments. Copyright © 2006 John Wiley & Sons, Ltd. [source] A review of nitrogen enrichment effects on three biogenic GHGs: the CO2 sink may be largely offset by stimulated N2O and CH4 emissionECOLOGY LETTERS, Issue 10 2009Lingli Liu Abstract Anthropogenic nitrogen (N) enrichment of ecosystems, mainly from fuel combustion and fertilizer application, alters biogeochemical cycling of ecosystems in a way that leads to altered flux of biogenic greenhouse gases (GHGs). Our meta-analysis of 313 observations across 109 studies evaluated the effect of N addition on the flux of three major GHGs: CO2, CH4 and N2O. The objective was to quantitatively synthesize data from agricultural and non-agricultural terrestrial ecosystems across the globe and examine whether factors, such as ecosystem type, N addition level and chemical form of N addition influence the direction and magnitude of GHG fluxes. Results indicate that N addition increased ecosystem carbon content of forests by 6%, marginally increased soil organic carbon of agricultural systems by 2%, but had no significant effect on net ecosystem CO2 exchange for non-forest natural ecosystems. Across all ecosystems, N addition increased CH4 emission by 97%, reduced CH4 uptake by 38% and increased N2O emission by 216%. The net effect of N on the global GHG budget is calculated and this topic is reviewed. Most often N addition is considered to increase forest C sequestration without consideration of N stimulation of GHG production in other ecosystems. However, our study indicated that although N addition increased the global terrestrial C sink, the CO2 reduction could be largely offset (53,76%) by N stimulation of global CH4 and N2O emission from multiple ecosystems. [source] Increase of atmospheric CO2 promotes phytoplankton productivityECOLOGY LETTERS, Issue 6 2004Peter Schippers Abstract It is usually thought that unlike terrestrial plants, phytoplankton will not show a significant response to an increase of atmospheric CO2. Here we suggest that this view may be biased by a neglect of the effects of carbon (C) assimilation on the pH and the dissociation of the C species. We show that under eutrophic conditions, productivity may double as a result of doubling of the atmospheric CO2 concentration. Although in practice productivity increase will usually be less, we still predict a productivity increase of up to 40% in marine species with a low affinity for bicarbonate. In eutrophic freshwater systems doubling of atmospheric CO2 may result in an increase of the productivity of more than 50%. Freshwaters with low alkalinity appeared to be very sensitive to atmospheric CO2 elevation. Our results suggest that the aquatic C sink may increase more than expected, and that nuisance phytoplankton blooms may be aggravated at elevated atmospheric CO2 concentrations. [source] Effects of parasitoid fecundity and host resistance on indirect interactions among hosts sharing a parasitoidECOLOGY LETTERS, Issue 6 2003George E. Heimpel Abstract We examine the effects of fecundity-limited attack rates and resistance of hosts to parasitism on the dynamics of two-host,one-parasitoid systems. We focus primarily on the situation where one parasitoid species attacks two host species that differ in their suitability for parasitism. While all eggs allocated to suitable hosts develop into adult parasitoids, some of the eggs allocated to marginal host do not develop. Marginal hosts can therefore act as a sink for parasitoid eggs. Three-species coexistence is favoured by low levels of parasitoid fecundity and by low levels of suitability of the marginal host. Our model also produces an indirect (+, ,) interaction in which the suitable host can benefit from the presence of the marginal host, but the marginal host suffers from the presence of the suitable host. The mechanism driving the indirect (+, ,) interaction is egg limitation of parasitoids incurred by allocating eggs to marginal hosts. [source] Characterization of marine isoprene-degrading communitiesENVIRONMENTAL MICROBIOLOGY, Issue 12 2009Laura Acuña Alvarez Summary Isoprene is a volatile and climate-altering hydrocarbon with an atmospheric concentration similar to that of methane. It is well established that marine algae produce isoprene; however, until now there was no specific information about marine isoprene sinks. Here we demonstrate isoprene consumption in samples from temperate and tropical marine and coastal environments, and furthermore show that the most rapid degradation of isoprene coincides with the highest rates of isoprene production in estuarine sediments. Isoprene-degrading enrichment cultures, analysed by denaturing gradient gel electrophoresis and 454 pyrosequencing of the 16S rRNA gene and by culturing, were generally dominated by Actinobacteria, but included other groups such as Alphaproteobacteria and Bacteroidetes, previously not known to degrade isoprene. In contrast to specialist methane-oxidizing bacteria, cultivated isoprene degraders were nutritionally versatile, and nearly all of them were able to use n -alkanes as a source of carbon and energy. We therefore tested and showed that the ubiquitous marine hydrocarbon-degrader, Alcanivorax borkumensis, could also degrade isoprene. A mixture of the isolates consumed isoprene emitted from algal cultures, confirming that isoprene can be metabolized at low, environmentally relevant concentrations, and suggesting that, in the absence of spilled petroleum hydrocarbons, algal production of isoprene could maintain viable populations of hydrocarbon-degrading microbes. This discovery of a missing marine sink for isoprene is the first step in obtaining more robust predictions of its flux, and suggests that algal-derived isoprene provides an additional source of carbon for diverse microbes in the oceans. [source] In situ measurement of methane fluxes and analysis of transcribed particulate methane monooxygenase in desert soilsENVIRONMENTAL MICROBIOLOGY, Issue 10 2009Roey Angel Summary Aerated soils are a biological sink for atmospheric methane. However, the activity of desert soils and the presence of methanotrophs in these soils have hardly been studied. We studied on-site atmospheric methane consumption rates as well as the diversity and expression of the pmoA gene, coding for a subunit of the particulate methane monooxygenase, in arid and hyperarid soils in the Negev Desert, Israel. Methane uptake was only detected in undisturbed soils in the arid region (,90 mm year,1) and vertical methane profiles in soil showed the active layer to be at 0,20 cm depth. No methane uptake was detected in the hyperarid soils (,20 mm year,1) as well as in disturbed soils in the arid region (i.e. agricultural field and a mini-catchment). Molecular analysis of the methanotrophic community using terminal restriction fragment length polymorphism (T-RFLP) and cloning/sequencing of the pmoA gene detected methanotrophs in the active soils, whereas the inactive ones were dominated by sequences of the homologous gene amoA, coding for a subunit of the ammonia monooxygenase. Even in the active soils, methanotrophs (as well as in situ activity) could not be detected in the soil crust, which is the biologically most important layer in desert soils. All pmoA sequences belonged to yet uncultured strains. Transcript analysis showed dominance of sequences clustering within the JR3, formerly identified in Californian grassland soils. Our results show that although active methanotrophs are prevalent in arid soils they seem to be absent or inactive in hyperarid and disturbed arid soils. Furthermore, we postulate that methanotrophs of the yet uncultured JR3 cluster are the dominant atmospheric methane oxidizers in this ecosystem. [source] On the relationship between methane production and oxidation by anaerobic methanotrophic communities from cold seeps of the Gulf of MexicoENVIRONMENTAL MICROBIOLOGY, Issue 5 2008Beth! Orcutt Summary The anaerobic oxidation of methane (AOM) in the marine subsurface is a significant sink for methane in the environment, yet our understanding of its regulation and dynamics is still incomplete. Relatively few groups of microorganisms consume methane in subsurface environments , namely the anaerobic methanotrophic archaea (ANME clades 1, 2 and 3), which are phylogenetically related to methanogenic archaea. Anaerobic oxidation of methane presumably proceeds via a ,reversed' methanogenic pathway. The ANME are generally associated with sulfate-reducing bacteria (SRB) and sulfate is the only documented final electron acceptor for AOM in marine sediments. Our comparative study explored the coupling of AOM with sulfate reduction (SR) and methane generation (MOG) in microbial communities from Gulf of Mexico cold seep sediments that were naturally enriched with methane and other hydrocarbons. These sediments harbour a variety of ANME clades and SRB. Following enrichment under an atmosphere of methane, AOM fuelled 50,100% of SR, even in sediment slurries containing petroleum-associated hydrocarbons and organic matter. In the presence of methane and sulfate, the investigated microbial communities produce methane at a small fraction (,10%) of the AOM rate. Anaerobic oxidation of methane, MOG and SR rates decreased significantly with decreasing concentration of methane, and in the presence of the SR inhibitor molybdate, but reacted differently to the MOG inhibitor 2-bromoethanesulfonate (BES). The addition of acetate, a possible breakdown product of petroleum in situ and a potential intermediate in AOM/SR syntrophy, did not suppress AOM activity; rather acetate stimulated microbial activity in oily sediment slurries. [source] Effect of in vitro and in vivo organotin exposures on the immune functions of murray cod (Maccullochella peelii peelii)ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 8 2007Andrew J. Harford Abstract Murray cod (Maccullochella peelii peelii) is an iconic native Australian freshwater fish and an ideal species for ecotoxicological testing of environmental pollutants. The species is indigenous to the Murray-Darling basin, which is the largest river system in Australia but also the ultimate sink for many environmental pollutants. The organotins tributyltin (TBT) and dibutyltin (DBT) are common pollutants of both freshwater and marine environments and are also known for their immunotoxicity in both mammals and aquatic organisms. In this study, TBT and DBT were used as exemplar immunotoxins to assess the efficiency of immune function assays (i.e., mitogen-stimulated lymphoproliferation, phagocytosis in head kidney tissue, and serum lysozyme activity) and to compare the sensitivity of Murray cod to other fish species. The organotins were lethal to Murray cod at concentrations previously reported as sublethal in rainbow trout (i.e., intraperitoneal [i.p.] lethal dose to 75% of the Murray cod [LD75] = 2.5 mg/kg DBT and i.p. lethal dose to 100% of the Murray cod [LD100] = 12.5 mg/kg TBT and DBT). In vivo TBT exposure at 0.1 and 0.5 mg/kg stimulated the phagocytic function of Murray cod (F = 6.89, df = 18, p = 0.004), while the highest concentration of 2.5 mg/kg TBT decreased lymphocyte numbers (F = 7.92, df = 18, p = 0.02) and mitogenesis (F = 3.66, df = 18, p = 0.035). Dibutyltin was the more potent immunosuppressant in Murray cod, causing significant reductions in phagocytic activity (F = 5.34, df = 16, p = 0.013) and lymphocyte numbers (F = 10.63, df = 16, p = 0.001). [source] Vegetated agricultural drainage ditches for the mitigation of pyrethroid-associated runoffENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 9 2005Erin R. Bennett Abstract Drainage ditches are indispensable components of the agricultural production landscape. A benefit of these ditches is contaminant mitigation of agricultural storm runoff. This study determined bifenthrin and lambda-cyhalothrin (two pyrethroid insecticides) partitioning and retention in ditch water, sediment, and plant material as well as estimated necessary ditch length required for effective mitigation. A controlled-release runoff simulation was conducted on a 650-m vegetated drainage ditch in the Mississippi Delta, USA. Bifenthrin and lambda-cyhalothrin were released into the ditch in a water-sediment slurry. Samples of water, sediment, and plants were collected and analyzed for pyrethroid concentrations. Three hours following runoff initiation, inlet bifenthrin and lambda-cyhalothrin water concentrations ranged from 666 and 374 ,g/L, respectively, to 7.24 and 5.23 ,g/L at 200 m downstream. No chemical residues were detected at the 400-m sampling site. A similar trend was observed throughout the first 7 d of the study where water concentrations were elevated at the front end of the ditch (0,25 m) and greatly reduced by the 400-m sampling site. Regression formulas predicted that bifenthrin and lambda-cyhalothrin concentrations in ditch water were reduced to 0.1% of the initial value within 280 m. Mass balance calculations determined that ditch plants were the major sink and/or sorption site responsible for the rapid aqueous pyrethroid dissipation. By incorporating vegetated drainage ditches into a watershed management program, agriculture can continue to decrease potential non-point source threats to downstream aquatic receiving systems. Overall results of this study illustrate that aquatic macrophytes play an important role in the retention and distribution of pyrethroids in vegetated agricultural drainage ditches. [source] Bench-scale evaluation of in situ bioremediation strategies for soil at a former manufactured gas plant siteENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 3 2005Jun Li Abstract We examined the biodegradation and desorption of a set of 15 polycyclic aromatic hydrocarbon (PAH) compounds in coal tar,contaminated soil at a former manufactured gas plant site to evaluate the feasibility of in situ bioremediation. Experiments were conducted in well-mixed aerobic soil suspensions containing various additives over a 93- to 106-d period. In general, both biotransformation and desorption decreased with PAH ring size, becoming negligible for the six-ring PAH compounds. Biodegradation by indigenous microorganisms was strongly accelerated by addition of inorganic nutrients (N, P, K, and trace metals). The rates of biotransformation of PAH compounds by indigenous microorganisms in nutrient-amended flasks outpaced their maximum (i.e., chelate-enhanced) rates of desorption to an infinite sink (Tenax®) in sterilized systems run in parallel, suggesting that indigenous organisms facilitated desorption. Biodegradation by indigenous organisms in nutrient-amended flasks appeared to be unaffected by the addition of a site-derived bacterial enrichment culture, resulting in approximately 100-fold higher aromatic dioxygenase levels, and by the addition of 0.01 M chelating agent (citrate or pyrophosphate), although such chelating agents greatly enhanced desorption in microbially inactivated flasks. The strong ability of nutrients to enhance degradation of the bioavailable PAHs indicates that their persistence for many decades at this site likely results from nutrient-limited natural biodegradation, and it also suggests that an effective strategy for their bioremediation could consist simply of adding inorganic nutrients. [source] Indices for bioavailability and biotransformation potential of contaminants in soilsENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 7 2004Washington J. Braida Abstract Bioavailability is an important consideration in risk assessment of soil contaminants and in the selection of appropriate remediation technologies for polluted sites. The present study examined the bioavailability and biodegradation potential of phenanthrene with respect to a pseudomonad in 15 different soils through separate measurements of mineralization, transformation, and desorption to a polymeric infinite sink (Tenax®) after 180-d sterile pre-equilibration with phenanthrene. Fractions strongly resistant to desorption and mineralization at long times were evident in all cases. After correcting for bioconversion (moles mineralized per mole transformed) determined in aqueous particle-free soil extracts, a correlation was found between the biotransformation-resistant fraction and the Tenax desorption-resistant fraction. Indices are proposed to assess bioavailability (BAt) and biotransformation potential (BTPt) of a compound in a soil based on parallel desorption and degradation studies over a selected period t. The BAt is the ratio of moles biotransformed to moles desorbed to an infinite sink, and it reflects the biotransformation rate relative to the maximal desorption rate. Values of BA30 (30-d values) ranged from 0.64 (for dark gray silt loam) to 1.12 (Wurtsmith Air Force Base [AFB] 2B, Oscoda, MI, USA). The BTPt is the ratio between moles biotransformed and moles of contaminant remaining sorbed after maximal desorption. The BTPt provides an indication of the maximum extent of biotransformation that may be expected in a system, assuming desorption is a prerequisite for biodegradation. Values of BTP30 ranged between 0.3 (Wurtsmith AFB 1B) and 13 (Mount Pleasant silt loam, NY, USA). The combination of BAt and BTPt provides insights regarding the relationship between physical availability (desorption) and biological processes (biotransformation kinetics, toxicity, other soil factors) that occur during biodegradation and are suggested to represent the remediation potential of the chemical. The BA30 values less than 0.9 and BTP30 values less than five indicate poor potential for site remediation. [source] Degradation of nonylphenol ethoxylates in estuarine sediment under aerobic and anaerobic conditionsENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 6 2003P. Lee Ferguson Abstract Nonylphenol ethoxylate (NPEO) surfactants and their metabolites are ubiquitous contaminants of the aquatic environment. Despite considerable interest in the environmental fate of these compounds due to concerns over toxicity and estrogenic activity, the pathways of NPEO degradation in sediments have not previously been reported, in spite of the fact that sediment appears to be an important sink for these compounds in the environment. In the present work, we have examined the rates and pathways of NPEO degradation in batch sediment slurry experiments using radiolabeled NPEO mixtures. Results suggest that NPEOs are more persistent in sediments under anaerobic conditions than in the presence of oxygen. In addition, it was illustrated that NPEO degradation proceeds via separate pathways in oxic and anoxic sediment. Discernible metabolites were identified and an overall mass balance for NPEO degradation in oxic and anoxic sediment was achieved. In contrast with previous studies, no evidence was observed for net production of nonylphenol from NPEOs during aerobic or anaerobic degradation. The observed relative rates at which NPEO ethoxymers disappeared in the sediment slurry experiments were consistent with previous reports for these compounds in sediment and other environmental media, although the absolute rates measured were somewhat faster than those reported for field sediments. [source] Topographic distribution of direct and hippocampus- mediated entorhinal cortex activity evoked by olfactory tract stimulationEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 7 2004Vadym Gnatkovsky Abstract Olfactory information is central for memory-related functions, such as recognition and spatial orientation. To understand the role of olfaction in learning and memory, the distribution and propagation of olfactory tract-driven activity in the parahippocampal region needs to be characterized. We recently demonstrated that repetitive stimulation of the olfactory tract in the isolated guinea pig brain preparation induces an early direct activation of the rostrolateral entorhinal region followed by a delayed response in the medial entorhinal cortex (EC), preceded by the interposed activation of the hippocampus. In the present study we performed a detailed topographic analysis of both the early and the delayed entorhinal responses induced by patterned stimulation of the lateral olfactory tract in the isolated guinea pig brain. Bi-dimensional maps of EC activity recorded at 128 recording sites with 4 × 4 matrix electrodes (410 µm interlead separation) sequentially placed in eight different positions, showed (i) an early (onset at 16.09 ± 1.2 ms) low amplitude potential mediated by the monosynaptic LOT input, followed by (ii) an associative potential in the rostral EC which originates from the piriform cortex (onset at 33.2 ± 2.3 ms), and (iii) a delayed potential dependent on the previous activation of the hippocampus. The sharp component of the delayed response had an onset latency between 52 and 63 ms and was followed by a slow wave. Laminar profile analysis demonstrated that in the caudomedial EC the delayed response was associated with two distinct current sinks located in deep and in superficial layers, whereas in the rostrolateral EC a small-amplitude sink could be detected in the superficial layers exclusively. The present report demonstrates that the output generated by the hippocampal activation is unevenly distributed across different EC subregions and indicates that exclusively the medial and caudal divisions receive a deep-layer input from the hippocampus. In the rostrolateral EC, specific network interactions may be generated by the convergence of the direct olfactory input and the olfaction-driven hippocampal output. [source] The Uncertainty in SCHF-DT Thermal Conductivity Measurements of Lotus-Type Porous CopperADVANCED ENGINEERING MATERIALS, Issue 10 2009Hiroshi Chiba Abstract Lotus-type porous metals with many straight pores are attractive for use as heat-sinks because a large heat-transfer capacity can be obtained, due to the small diameter of the pores. In order to use lotus-type porous copper effectively as a heat sink, it is important to know the effective thermal conductivity considering the effect of pores on heat conduction in the material. Since these metals have anisotropic pores, a steady-state comparative longitudinal heat-flow method for measuring thermal conductivity, referring to an ASTM standard, is better than other methods. So far, the effective thermal conductivity of lotus-type porous copper has been measured by using specimens of different thickness (the SCHF-DT method). In this paper, the uncertainty in the effective thermal conductivity of a specimen measured using this method was evaluated by comparison between numerical analysis and current experimental data. The following conclusions were drawn: 1) The uncertainty showed good agreement with the uncertainty analysis; 2) The contribution of the thermal grease thickness was large, based on a combined standard uncertainty analysis; and, 3) The effective thermal conductivity perpendicular to the pores of lotus copper can be measured within 10% uncertainty by this method. [source] Comparison of greenhouse gas fluxes and nitrogen budgets from an ombotrophic bog in Scotland and a minerotrophic sedge fen in FinlandEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 5 2010J. Drewer Northern peatlands cover approximately 4% of the global land surface area. Those peatlands will be particularly vulnerable to environmental and climate change and therefore it is important to investigate their total greenhouse gas (GHG) budgets, to determine the feedback on the climate. Nitrogen (N) is known to influence the GHG budget in particular by affecting the methane (CH4) balance. At two peatland sites in Scotland and Finland GHG fluxes of carbon dioxide (CO2), methane and nitrous oxide (N2O) and nitrogen fluxes were measured as part of the European project ,NitroEurope'. The Scottish site, Auchencorth Moss, was a GHG sink of ,321, ,490 and ,321 g CO2 eq m,2 year,1 in 2006, 2007 and 2008, respectively, with CO2 as the dominating GHG. In contrast, the dominating GHG at the Finnish site, Lompolojänkkä, was CH4, resulting in the site being a net GHG source of +485 and +431 g CO2 eq m,2 year,1 in 2006 and 2007, respectively. Therefore, Auchencorth Moss had a negative global warming potential (GWP) whilst Lompolojänkkä had a positive GWP over the investigated time period. Initial results yielded a positive N budget for Lompolojänkkä of 7.1 kg N ha,1 year,1, meaning the site was gaining nitrogen, and a negative N budget for Auchencorth Moss of ,2.4 kg N ha year,1, meaning the site was losing nitrogen. [source] Diffusion of strongly sorbed solutes in soil: a dual-porosity model allowing for slow access to sorption sites and time-dependent sorption reactionsEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 1 2010M. Ptashnyk We use homogenization techniques to derive a dual (or double) porosity model of solute diffusion and reaction in soil, allowing for slow access to sorption sites within micro-aggregates and time-dependent sorption reactions. We give a means for determining the conditions in which micro-scale concentration gradients affect macro-scale gradients and fluxes. We present equations for a unit volume of soil represented as a series of uniformly-spaced, porous spherical particles, containing and surrounded by solution through which solutes diffuse. The methods we use can, in principle, be applied to more complex geometries. We compare the model's predictions with those of the equivalent single porosity model for commonly used boundary conditions. We show that failure to allow for slow access to reaction sites can lead to seriously erroneous results. Slow access has the effect of decreasing the sorption of solute into soil from a source or desorption from soil to a sink. As a result of slow access, the diffusion coefficients of strongly-sorbed solutes measured at the macro-scale will be time-dependent and will depend on the method of measurement. We also show that slow access is more often likely to limit macro-scale diffusion than rates of slow chemical reactions per se. In principle, the unimportance of slow reactions except at periods longer than several weeks of diffusion simplifies modelling because, if slow access is correctly allowed for, sorption can be described with equilibrium relations with an understanding of speciation and rapid sorption-desorption reactions. [source] Respiration of nitrous oxide in suboxic soilEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 3 2009B. Vieten Summary Reduction of nitrous oxide (N2O) is an autonomous respiratory pathway. Nitrous oxide is an alternative electron acceptor to O2 when intensive biological activity and reduced diffusivity result in an O2 deficit. Hypoxic or anoxic micro sites may form even in well-aerated soils, and provide a sink for N2O diffusing through the gas-filled pore space. We reproduced similar in vitro conditions in suboxic (0.15% O2) flow-through incubation experiments with samples from a Stagnosol and from a Histosol. Apparent half-saturation constants (km) for N2O reduction were similar for both soils and were, on average, 3.8 ,mol mol,1 at 5°C, 5.1 ,mol mol,1 at 10°C, and 6.9 ,mol mol,1 at 20°C. Respiration of N2O was estimated to contribute a maximum proportion of 1.7% to total respiration in the Stagnosol (pH 7.0) and 0.9% in the Histosol (pH 2.9). [source] Challenges and opportunities in soil organic matter researchEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 2 2009R. Lal Summary Soil organic matter (SOM) can be a source or sink for atmospheric CO2 depending on land use, and management of soil, vegetation and water resources. SOM is a source of atmospheric CO2, with the use of extractive farming practices that lead to a negative nutrient balance and exacerbate soil degradation. The historic loss of C from the SOM pool between the 1850s and 2000 is estimated at 78 ± 12 Gt compared with the emission of 270 ± 30 Gt from fossil fuel combustion. Despite its numerous direct and ancillary benefits, enhancing the SOM pool is a major challenge, especially in impoverished and depleted soils in harsh tropical climates. In addition to biophysical factors, there are also numerous social, economic and political constraints that limit increase in SOM pools. Conversion of plough-tillage to no-till farming, an important practice to enhance the SOM pool, is constrained by the limited access to herbicides and seed drill, and the competing uses of crop residues. Yet, enhancing the SOM pool is essential to restoring degraded soils, advancing food security and improving the environment. Important subjects among researchable topics include: assessing the rate of SOM accretion for a wide range of land use and management practices with reference to a baseline; evaluating the importance of biochar; measuring and predicting SOM at landscape and extrapolation to regional scale; establishing relationships between SOM and soil quality and agronomic productivity; determining on- and off-site effects of crop residues removal for ethanol/biofuel production; determining the fate of C in SOM translocated by erosional processes; evaluating nutrient requirements for increasing SOM in croplands; validating predictive models in tropical environments; and developing methodology for trading C credits. [source] Methane and nitrous oxide fluxes of soils in pure and mixed stands of European beech and Norway spruceEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 5 2006W. Borken Summary Tree species can affect the sink and source strength of soils for atmospheric methane and nitrous oxide. Here we report soil methane (CH4) and nitrous oxide (N2O) fluxes of adjacent pure and mixed stands of beech and spruce at Solling, Germany. Mean CH4 uptake rates ranged between 18 and 48 ,g C m,2 hour,1 during 2.5 years and were about twice as great in both mixed and the pure beech stand as in the pure spruce stand. CH4 uptake was negatively correlated with the dry mass of the O horizon, suggesting that this diminishes the transport of atmospheric CH4 into the mineral soil. Mean N2O emission was rather small, ranging between 6 and 16 ,g N m,2 hour,1 in all stands. Forest type had a significant effect on N2O emission only in one mixed stand during the growing season. We removed the O horizon in additional plots to study its effect on gas fluxes over 1.5 years, but N2O emissions were not altered by this treatment. Surprisingly, CH4 uptake decreased in both mixed and the pure beech stands following the removal of the O horizon. The decrease in CH4 uptake coincided with an increase in the soil moisture content of the mineral soil. Hence, O horizons may maintain the gas diffusivity within the mineral soil by storing water which cannot penetrate into the mineral soil after rainfall. Our results indicate that conversion of beech forests to beech,spruce and pure spruce forests could decrease soil CH4 uptake, while the long-term effect on N2O emissions is expected to be rather small. [source] Trace element distributions in soils developed in loess deposits from northern FranceEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 3 2006T. Sterckeman Summary A pedo-geochemical survey was carried out in the Nord-Pas de Calais region (France) on soils developed in loess deposits. Total concentrations of Al, Fe and 18 trace elements, as well as common soil characteristics, were determined in samples from 52 surface and 97 deep horizons developed in these loess deposits. The Pb isotopic composition was determined in two sola. The composition of deep horizons, compared with that of the upper continental crust, with that of horizons developed from 21 other sedimentary rocks from the region and with that of loess from various parts of the world, confirms that loess from the Nord-Pas de Calais region derives from multi-recycled and well-mixed ancient sedimentary rocks. Correlation analysis shows that least mobile (i.e. ionic potential (Z/r) is between 3 and 7) geogenic elements (Bi, Co, Cr, Cu, In, Ni, Pb, Sn, Tl, V, Zn) are associated with the fraction <2 µm (which we define as ,lutum'). More mobile elements (As, Cd, Hg, Mn, Mo, Sb, Se) are less associated with this fraction. Cadmium is particularly linked to Mn. The distribution of [trace element]/([Al] or [Fe]) in the French loess gives the background content for soils developed from most sedimentary materials in northwestern Europe. Topsoils are enriched with all the trace elements examined, except Co, Cr and Ni. Enrichments with Cd, Cu, Mn and Zn are greater in cultivated soils than in forest soils. Enrichments with Pb and with Cu, Hg, Mo, Sb, Se and Sn are mainly due to human contamination through atmospheric fallout. Organic matter seems to act as a sink for all the exogenous trace elements. [source] NO synthase isoforms specifically modify peroxynitrite reactivityFEBS JOURNAL, Issue 19 2010Amandine Maréchal Nitric oxide synthases (NOSs) are multi-domain hemothiolate proteins that are the sole source of nitric oxide (NO) in mammals. NOSs can also be a source or a sink for peroxynitrite (PN), an oxidant that is suspected to be involved in numerous physiopathological processes. In a previous study, we showed that the oxygenase domain of the inducible NOS (iNOSoxy) reacts with PN and changes its oxidative reactivity [Maréchal A, Mattioli TA, Stuehr DJ & Santolini J (2007) J Biol Chem282, 14101,14112]. Here we report a similar analysis on two other NOS isoforms, neuronal NOS (nNOS) and a bacterial NOS-like protein (bsNOS). All NOSs accelerated PN decomposition, with accumulation of a similar heme intermediate. The kinetics of PN decomposition and heme transitions were comparable among NOSs. However, their effects on PN reactivity differ greatly. All isoforms suppressed PN two-electron oxidative activity, but iNOSoxy enhanced PN one-electron oxidation and nitration potencies, the oxygenase domain of nNOS (nNOSoxy) affected them minimally, and bsNOS abolished all PN reactivities. This led to the loss of both NOS and PN decomposition activities for nNOSoxy and iNOSoxy, which may be linked to the reported alterations in their electronic absorption spectra. Bacterial bsNOS was affected to a lesser extent by reaction with PN. We propose that these differences in PN reactivity among NOSs might arise from subtle differences in their heme pockets, and could reflect the physiological specificity of each NOS isoform, ranging from oxidative stress amplification (iNOS) to detoxification (bsNOS). [source] Biomimetic Approach to Confer Redox Activity to Thin Chitosan FilmsADVANCED FUNCTIONAL MATERIALS, Issue 16 2010Eunkyoung Kim Abstract Electron transfer in biology occurs with individual or pairs of electrons, and is often mediated by catechol/o -quinone redox couples. Here, a biomimetic polysaccharide-catecholic film is fabricated in two steps. First, the stimuli-responsive polysaccharide chitosan is electrodeposited as a permeable film. Next, the chitosan-coated electrode is immersed in a solution containing catechol and the electrode is biased to anodically-oxidize the catechol. The oxidation products covalently graft to the chitosan films as evidenced by electrochemical quartz crystal microbalance (EQCM) studies. Cyclic voltammetry (CV) measurements demonstrate that the catechol-modified chitosan films are redox-active although they are non-conducting and cannot directly transfer electrons to the underlying electrode. The catechol-modified chitosan films serve as a localized source or sink of electrons that can be transferred to soluble mediators (e.g., ferrocene dimethanol and Ru(NH3) 6Cl3). This electron source/sink is finite, can be depleted, but can be repeatedly regenerated by brief (30 s) electrochemical treatments. Further, the catechol-modified chitosan films can i) amplify currents associated with the soluble mediators, ii) partially-rectify these currents in either oxidative or reductive directions (depending on the mediator), and iii) switch between regenerated-ON and depleted-OFF states. Physical models are proposed to explain these novel redox properties and possible precedents from nature are discussed. [source] Carbon monoxide uptake kinetics in unamended and long-term nitrogen-amended temperate forest soilsFEMS MICROBIOLOGY ECOLOGY, Issue 3 2006Alvarus S. K. Chan Abstract The effect of nitrogen (N) additions on the dynamics of carbon monoxide consumption in temperate forest soils is poorly understood. We measured soil CO profiles, potential rates of CO consumption and uptake kinetics in temperate hardwood and pine control plots and plots amended with 50 and 150 kg N ha,1 year,1 for more than 15 years. Soil profiles of CO concentrations were above atmospheric levels in the high-N plots of both stands, suggesting that in these forest soils the balance between consumption and production may be shifted so that either production is increased or consumption decreased. Highest rates of CO consumption were measured in the organic horizon and decreased with soil depth. In the N-amended plots, CO consumption increased in all but one soil depth of the hardwood stand, but decreased in all soil depths of the pine stand. CO enzyme affinities increased with soil depth in the control plots. However, enzyme affinities in the most active soil depths (organic and 0,5 cm mineral) decreased in response to low levels of N in both stands. In the high-N plots, affinities dramatically-increased in the hardwood stand, but decreased in the organic horizon and increased slightly in the 0,5 cm mineral soil in the pine stand. These findings indicate that long-term N addition either by fertilization or deposition may alter the size, composition and/or physiology of the community of CO consumers so that their ability to act as a sink for atmospheric CO has changed. This change could have a substantial effect on the lifetime of greenhouse gases such as CH4 and therefore the future of Earth's climate. [source] Characterisation of microbial community composition of a Siberian tundra soil by fluorescence in situ hybridisationFEMS MICROBIOLOGY ECOLOGY, Issue 1 2004Svenja Kobabe Abstract The bacterial community composition of the active layer (0,45 cm) of a permafrost-affected tundra soil was analysed by fluorescence in situ hybridisation (FISH). Arctic tundra soils contain large amounts of organic carbon, accumulated in thick soil layers and are known as a major sink of atmospheric CO2. These soils are totally frozen throughout the year and only a thin active layer is unfrozen and shows biological activity during the short summer. To improve the understanding of how the carbon fluxes in the active layer are controlled, detailed analysis of composition, functionality and interaction of soil microorganisms was done. The FISH analyses of the active layer showed large variations in absolute cell numbers and in the composition of the active microbial community between the different horizons, which is caused by the different environmental conditions (e.g., soil temperature, amount of organic matter, aeration) in this vertically structured ecosystem. Universal protein stain 5-(4,6-dichlorotriazin-2-yl)aminofluorescein (DTAF) showed an exponential decrease of total cell counts from the top to the bottom of the active layer (2.3 × 109,1.2 × 108 cells per gram dry soil). Using FISH, up to 59% of the DTAF-detected cells could be detected in the surface horizon, and up to 84% of these FISH-detected cells could be affiliated to a known phylogenetic group. The amount of FISH-detectable cells decreased with increasing depth and so did the diversity of ascertained phylogenetic groups. [source] Baltic Sea cyanobacterial bloom contains denitrification and nitrification genes, but has negligible denitrification activityFEMS MICROBIOLOGY ECOLOGY, Issue 2 2003Jaana M Tuomainen Abstract A cyanobacterial bloom in the Gulf of Finland, Baltic Sea, was sampled throughout the development and senescence of aggregates in August 1999. While conditions inside the aggregates were favourable for denitrification (rich in nitrogen and carbon, with anoxic microzones), essentially none was detected by a sensitive isotope pairing method. Polymerase chain reaction-based methods, targeting functional genes encoding the key enzymes of denitrification and nitrification processes (nirS, nirK, amoA), revealed that the non-aggregated filaments harboured amoA gene fragments with high similarity to Nitrosospira amoA sequences, as well as both types of nitrite reductase genes, nirS and nirK. Only the nirS -type nitrite reductase gene and no amoA was detected in aggregated filaments. Thus, despite optimal environmental conditions and genetic potential for denitrification, the blooms of filamentous nitrogen-fixing cyanobacteria must be seen solely as a source, and not as a sink of nitrogen in the Baltic Sea. [source] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||