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Second Class (second + class)
Selected AbstractsThe Arabidopsis class VIII myosin ATM2 is involved in endocytosisCYTOSKELETON, Issue 6 2008Amirali Sattarzadeh Abstract Members of the class XI of the myosin superfamily comprising higher plant, actin-based molecular motors have been shown to be involved in peroxisome and Golgi vesicle trafficking comparable to yeast and animal class V myosins. The tasks of the second class of myosins of higher plants, class VIII, are unclear. In this study the class VIII myosin ATM2 from the model plant Arabidopsis thaliana was selected for the examination of cargo specificity in vivo. Fluorescent protein-fusion plasmid constructs with fragments of the ATM2 cDNA were generated and used for Agrobacterium tumefaciens -based transient transformation of Nicotiana benthamiana leaves. The resulting subcellular localization patterns were recorded by live imaging with confocal laser scanning microscopy (CLSM) in epidermal leaf cells. Expression of a nearly full-length construct displayed labeling of filaments and vesicles, a head + neck fragment led to decoration of filaments only. However, expression of fluorescent protein-tagged C-terminal tail domain constructs labeled vesicular structures of different appearance. Most importantly, coexpression of different RFP/YFP-ATM2 tail fusion proteins showed colocalization and, hence, binding to the same type of vesicular target. Further coexpression experiments of RFP/YFP-ATM2 tail fusion proteins with the endosomal marker FYVE and the endosomal tracer FM4-64 demonstrated colocalization with endosomes. Colocalization was also detected by expression of the CFP-tagged membrane receptor BRI1 as marker, which is constantly recycled via endosomes. Occasionally the ATM2 tail targeted to sites at the plasma membrane closely resembling the pattern obtained upon expression of the YFP-ATM1 C-terminal tail. ATM1 is known for its localization at the plasma membrane at sites of plasmodesmata. Cell Motil. Cytoskeleton 2008. © 2008 Wiley-Liss, Inc. [source] Forecasting daily high ozone concentrations by classification treesENVIRONMETRICS, Issue 2 2004F. Bruno Abstract This article proposes the use of classification trees (CART) as a suitable technique for forecasting the daily exceedance of ozone standards established by Italian law. A model is formulated for predicting, 1 and 2 days beforehand, the most probable class of the maximum daily urban ozone concentration in the city of Bologna. The standard employed is the so-called ,warning level' (180,,g/m3). Meteorological forecasted variables are considered as predictors. Pollution data show a considerable discrepancy between the dimensions of the two classes of events. The first class includes those days when the observed maximum value exceeds the established standard, while the second class contains those when the observed maximum value does not exceed the said standard. Due to this peculiarity, model selection procedures using cross-validation usually lead to overpruning. We can overcome this drawback by means of techniques which replicate observations, through the modification of their inclusion probabilities in the cross-validation sets. Copyright © 2004 John Wiley & Sons, Ltd. [source] Logistic Population Growth in the World's Largest CitiesGEOGRAPHICAL ANALYSIS, Issue 4 2006Gordon F. Mulligan This article demonstrates that recent population growth in the world's largest cities has conformed to the general parameters of the logistic process. Using data recently provided by the United Nations, logistic population growth for 485 million-person cities is analyzed at 5-year intervals during 1950,2010, with the UN projections for 2015 adopted as upper limits. A series of ordinary least-squares regression models of increasing complexity are estimated on the pooled data. In one class of models, the logarithms of population proportions are specified to be linear in time, which is the standard approach, but in a second class of models those proportions are specified as being quadratic. The most complex models control logistic growth estimates for (i) city-specific effects (e.g., initial population), (ii) nation-specific effects (e.g., economic development, age distribution of population), and (iii) global coordinates (for unobserved effects). Moreover, the results are segregated according to each city's membership in four different growth clubs, which was an important finding of previous research. [source] Towards very high-order accurate schemes for unsteady convection problems on unstructured meshesINTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS, Issue 8-9 2005R. Abgrall Abstract We construct several high-order residual-distribution methods for two-dimensional unsteady scalar advection on triangular unstructured meshes. For the first class of methods, we interpolate the solution in the space,time element. We start by calculating the first-order node residuals, then we calculate the high-order cell residual, and modify the first-order residuals to obtain high accuracy. For the second class of methods, we interpolate the solution in space only, and use high-order finite difference approximation for the time derivative. In doing so, we arrive at a multistep residual-distribution scheme. We illustrate the performance of both methods on several standard test problems. Copyright © 2005 John Wiley & Sons, Ltd. [source] A comparison of modern data analysis methods for X-ray and neutron specular reflectivity dataJOURNAL OF APPLIED CRYSTALLOGRAPHY, Issue 5 2007A. Van Der Lee Data analysis methods for specular X-ray or neutron reflectivity are compared. The methods that have been developed over the years can be classified into different types. The so-called classical methods are based on Parrat's or Abelès' formalism and rely on minimization using more or less evolved Levenberg,Marquardt or simplex routines. A second class uses the same formalism, but optimization is carried out using simulated annealing or genetic algorithms. A third class uses alternative expressions for the reflectivity, such as the Born approximation or distorted Born approximation. This makes it easier to invert the specular data directly, coupled or not with classical least-squares or iterative methods using over-relaxation or charge-flipping techniques. A fourth class uses mathematical methods founded in scattering theory to determine the phase of the scattered waves, but has to be coupled in certain cases with (magnetic) reference layers. The strengths and weaknesses of a number of these methods are evaluated using simulated and experimental data. It is shown that genetic algorithms are by far superior to traditional and advanced least-squares methods, but that they fail when the layers are less well defined. In the latter case, the methods from the third or fourth class are the better choice, because they permit at least a first estimate of the density profile to be obtained that can be refined using the classical methods of the first class. It is also shown that different analysis programs may calculate different reflectivities for a similar chemical system. One reason for this is that the representation of the layers is either described by chemical composition or by scattering length or electronic densities, between which the conversion of the absorptive part is not straightforward. A second important reason is that routines that describe the convolution with the instrumental resolution function are not identical. [source] Serum and glucocorticoid-regulated protein kinases: Variations on a themeJOURNAL OF CELLULAR BIOCHEMISTRY, Issue 6 2006Maude Tessier Abstract The phosphatidylinositol 3, kinase (PI3K)-signaling pathway plays a critical role in a variety of cellular responses such as modulation of cell survival, glucose homeostasis, cell division, and cell growth. PI3K generates important lipid second messengers,phosphatidylinositides that are phosphorylated at the 3, position of their inositol ring head-group. These membrane restricted lipids act by binding with high affinity to specific protein domains such as the pleckstrin homology (PH) domain. Effectors of PI3K include molecules that harbor such domains such as phosphoinositide-dependent kinase (PDK1) and protein kinase B (PKB), also termed Akt. The mammalian genome encodes three different PKB genes (,, ,, and ,; Akt1, 2, and 3, respectively) and each is an attractive target for therapeutic intervention in diseases such as glioblastoma and breast cancer. A second family of three protein kinases, termed serum and glucocorticoid-regulated protein kinases (SGKs), is structurally related to the PKB family including regulation by PI3K but lack a PH domain. However, in addition to PH domains, a second class of 3, phosphorylated inositol phospholipid-binding domains exists that is termed Phox homology (PX) domain: this domain is found in one of the SGKs (SGK3). Here, we summarize knowledge of the three SGK isoforms and compare and contrast them to PKB with respect to their possible importance in cellular regulation and potential as therapeutic targets. J. Cell. Biochem. © 2006 Wiley-Liss, Inc. [source] | ||||||||||