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Sequence Length (sequence + length)
Selected AbstractsBlind decoder-assisted interference reduction for coded DS-CDMA systems,INTERNATIONAL JOURNAL OF ADAPTIVE CONTROL AND SIGNAL PROCESSING, Issue 9 2005Ryan A. Pacheco Abstract We propose an iterative blind interference reduction strategy for short-burst coded DS-CDMA systems. The blind strategy works by creating a set of ,training sequences' in the receiver that are used as input to an interference reduction algorithm whose task is to produce a corresponding set of equalizers that attempt to recover the desired signal. To maintain a reasonable complexity level we develop a semi-blind interference reduction algorithm that is capable of equalizing the received signal with a relatively small training sequence length (thus maintaining a small training sequence set). The objective then becomes to determine which equalizer from the generated set gives the best performance (smallest bit error). It is demonstrated that the success of this scheme depends greatly on the ability to find an appropriate criterion for picking the best equalizer. Of the tested criteria, one based on feedback from the decoder (essentially using trellis information) is shown to achieve nearly optimal performance. Copyright © 2005 John Wiley & Sons, Ltd. [source] Synthesis and characterization of multiblock copolymers composed of poly(5-methyl-5-benzyloxycarbonyl-1,3-dioxan-2-one) outer blocks and poly(L -lactide) inner blocksJOURNAL OF POLYMER SCIENCE (IN TWO SECTIONS), Issue 23 2006Jamie M. Messman Abstract Ethylene glycol (EG) initiated, hydroxyl-telechelic poly(L -lactide) (PLLA) was employed as a macroinitiator in the presence of a stannous octoate catalyst in the ring-opening polymerization of 5-methyl-5-benzyloxycarbonyl-1,3-dioxan-2-one (MBC) with the goal of creating A,B,A-type block copolymers having polycarbonate outer blocks and a polyester center block. Because of transesterification reactions involving the PLLA block, multiblock copolymers of the A,(B,A)n,B,A type were actually obtained, where A is poly(5-methyl-5-benzyloxycarbonyl-1,3-dioxan-2-one), B is PLLA, and n is greater than 0. 1H and 13C NMR spectroscopy of the product copolymers yielded evidence of the multiblock structure and provided the lactide sequence length. For a PLLA macroinitiator with a number-average molecular weight of 2500 g/mol, the product block copolymer had an n value of 0.8 and an average lactide sequence length (consecutive C6H8O4 units uninterrupted by either an EG or MBC unit) of 6.1. For a PLLA macroinitiator with a number-average molecular weight of 14,400 g/mol, n was 18, and the average lactide sequence length was 5.0. Additional evidence of the block copolymer architecture was revealed through the retention of PLLA crystallinity as measured by differential scanning calorimetry and wide-angle X-ray diffraction. Multiblock copolymers with PLLA crystallinity could be achieved only with isolated PLLA macroinitiators; sequential addition of MBC to high-conversion L -lactide polymerizations resulted in excessive randomization, presumably because of residual L -lactide monomer. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 6817,6835, 2006 [source] Molecular evolution and phylogeny of the angiosperm ycf2 geneJOURNAL OF SYSTEMATICS EVOLUTION, Issue 4 2010Jin-Ling HUANG Abstract, Much of the recent progress in understanding angiosperm phylogeny has been achieved using multigene or plastid genome datasets. However, it is largely unclear what size of dataset is required to achieve sufficient resolution. The ycf2 gene is the largest plastid gene in angiosperms and it was used as part of multigene datasets in several earlier investigations into angiosperm relationships. In this study, we show that the ycf2 gene alone can provide a generally well-supported phylogeny that is consistent with those inferred from the most comprehensive multigene or plastid genome datasets. The phylogenetic signal of the ycf2 gene is likely derived from the combination of its long sequence length and low rate of nucleotide substitution. The ycf2 gene may provide a low-cost alternative to comprehensive multigene or genome datasets for investigating angiosperm relationships. [source] BARCODING: Assessing the effect of varying sequence length on DNA barcoding of fungiMOLECULAR ECOLOGY RESOURCES, Issue 3 2007XIANG JIA MIN Abstract DNA barcoding shows enormous promise for the rapid identification of organisms at the species level. There has been much recent debate, however, about the need for longer barcode sequences, especially when these sequences are used to construct molecular phylogenies. Here, we have analysed a set of fungal mitochondrial sequences , of various lengths , and we have monitored the effect of reducing sequence length on the utility of the data for both species identification and phylogenetic reconstruction. Our results demonstrate that reducing sequence length has a profound effect on the accuracy of resulting phylogenetic trees, but surprisingly short sequences still yield accurate species identifications. We conclude that the standard short barcode sequences (,600 bp) are not suitable for inferring accurate phylogenetic relationships, but they are sufficient for species identification among the fungi. [source] Reactive blending of poly(ethylene terephthalate)(pet)/ poly(ethylene 2,6-naphthalate)(pen).POLYMER ENGINEERING & SCIENCE, Issue 8 2002I: Effect of mixing conditions on chain structure Reactive blending of poly(ethylene terephthalate)/poly(ethylene naphthalene 2,6dicarboxylate) with addition of 2,2'-bis(1,3-oxazoline) (BOZ) has been studied under various mixing conditions for the different compositions. The transesterification level, the sequence length of both PET and PEN short blocks, and the degree of randomness were estimated using1H NMR. The results indicate that both mixing time and temperature are the primary factors controlling the transesterification, while the chain extender BOZ can significantly accelerate the transesterification between PET and PEN at 275°C. The composition also, to some extent, influences the transerification level as the mixing time is increased. As a consequence of transesterification proceeding, the sequence structures of the reactive blends are also markedly changed, which corresponds to a transfer from an initial block structure to a multiblock structure with higher randomness. The change in the microstructure of the reactive blends has also been analyzed by a Bernoullian statistics model. The effect of the BOZ on the intrinsic viscosity of the reactive blends is discussed. [source] New aspects of unsaturated polyester resin synthesis.POLYMER INTERNATIONAL, Issue 5 2003Part 2. Abstract The distribution of unsaturations in the prepolymer of a typical unsaturated polyester (UP) resin (maleic anhydride, phthalic anhydride and 1,2-propylene glycol) has been shown to influence the kinetics of the cure process with styrene monomer. Segments containing double bonds in close proximity appear to lower the reactivity of the resin due to steric hindrance, as indicated by the fact that the rate of cure and the final degree of cure, measured by differential scanning calorimetry (DSC), increase as the average sequence length (SL) of maleic units decreases. This implies that the reactivity of UP resins may be improved by synthesis of prepolymers with certain reactant sequence-length distributions. The copolymer formed by the melt condensation process of maleic anhydride, phthalic anhydride and 1,2-propylene glycol in the absence of a transesterification catalyst has a non-random structure with a tendency towards blockiness. This was established using 1H NMR analysis in tandem with deterministic and Monte Carlo modelling techniques. Copyright © 2003 Society of Chemical Industry [source] Prediction of partial membrane protein topologies using a consensus approachPROTEIN SCIENCE, Issue 12 2002Johan Nilsson PCT, partial consensus topology; TMH, transmembrane helix Abstract We have developed a method to reliably identify partial membrane protein topologies using the consensus of five topology prediction methods. When evaluated on a test set of experimentally characterized proteins, we find that approximately 90% of the partial consensus topologies are correctly predicted in membrane proteins from prokaryotic as well as eukaryotic organisms. Whole-genome analysis reveals that a reliable partial consensus topology can be predicted for ,70% of all membrane proteins in a typical bacterial genome and for ,55% of all membrane proteins in a typical eukaryotic genome. The average fraction of sequence length covered by a partial consensus topology is 44% for the prokaryotic proteins and 17% for the eukaryotic proteins in our test set, and similar numbers are found when the algorithm is applied to whole genomes. Reliably predicted partial topologies may simplify experimental determinations of membrane protein topology. [source] Flexible and Context-Dependent Categorization by Eighteen-Month-OldsCHILD DEVELOPMENT, Issue 1 2007Denis Mareschal One hundred 18-month-olds were tested using sequential touching and following 4 different priming contexts using sets of toys that could be simultaneously categorized at either the basic or global level. An exact expression of the expected mean sequence length for arbitrary categories was derived as a function of the number of touches made, and a finite mixture model analytic method was also used to explore individual variability in categorization. Toddlers could categorize flexibly and spontaneously selected the level of categorization as a function of the prior prime. Perceptual Variability emerged as a predictor of the level at which infants subsequently categorized. The infants were also able to classify objects as members of both basic- and global-level categories simultaneously. [source] A Review of Arthropod Phylogeny: New Data Based on Ribosomal DNA Sequences and Direct Character OptimizationCLADISTICS, Issue 2 2000Gonzalo Giribet Ribosomal gene sequence data are used to explore phylogenetic relationships among higher arthropod groups. Sequences of 139 taxa (23 outgroup and 116 ingroup taxa) representing all extant arthropod "classes" except Remipedia and Cephalocarida are analyzed using direct character optimization exploring six parameter sets. Parameter choice appears to be crucial to phylogenetic inference. The high level of sequence heterogeneity in the 18S rRNA gene (sequence length from 1350 to 2700 bp) makes placement of certain taxa with "unusual" sequences difficult and underscores the necessity of combining ribosomal gene data with other sources of information. Monophyly of Pycnogonida, Chelicerata, Chilopoda, Chilognatha, Malacostraca, Branchiopoda (excluding Daphnia), and Ectognatha are among the higher groups that are supported in most of the analyses. The positions of the Pauropoda, Symphyla, Protura, Collembola, Diplura, Onychophora, Tardigrada, and Daphnia are unstable throughout the parameter space examined. [source] Synthesis and characterization of sulfonated-fluorinated, hydrophilic-hydrophobic multiblock copolymers for proton exchange membranesJOURNAL OF POLYMER SCIENCE (IN TWO SECTIONS), Issue 4 2009Xiang Yu Abstract Hydrophilic/hydrophobic block copolymers as proton exchange membranes (PEMs) has become an emerging area of research in recent years. These copolymers were obtained through moderate temperature (, 100 °C) coupling reactions, which minimize the ether-ether interchanges between hydrophobic and hydrophilic telechelic oligomers via a nucleophilic aromatic substitution mechanism. The hydrophilic blocks were based on the nucleophilic step polymerization of 3,3,-disulfonated, 4,4,-dichlorodiphenyl sulfone with an excess 4,4,-biphenol to afford phenoxide endgroups. The hydrophobic (fluorinated) blocks were largely based on decafluoro biphenyl (excess) and various bisphenols. The copolymers were obtained in high molecular weights and were solvent cast into tough membranes, which had nanophase separated hydrophilic and hydrophobic regions. The performance and structure-property relationships of these materials were studied and compared to random copolymer systems. NMR results supported that the multiblock sequence had been achieved. They displayed superior proton conductivity, due to the ionic proton conducting channels formed through the self-assembly of the sulfonated blocks. The nano-phase separated morphologies of the copolymer membranes were studied and confirmed by atomic force microscopy. Through control of a variety of parameters, including ion exchange capacity and sequence lengths, performances as high, or even higher than those of the state-of-the-art PEM, Nafion, were achieved. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 1038,1051, 2009 [source] 13Carbon nuclear magnetic resonance of ethylene,propylene,1-decene terpolymersJOURNAL OF POLYMER SCIENCE (IN TWO SECTIONS), Issue 16 2003Fernanda F. Nunes Escher Abstract Many studies have been reported on the 13C NMR characterization of ethylene,,-olefin copolymers, but only a few have been reported on terpolymers. The incorporation of an ,-olefin into the polyethylene chain changes the structure and, consequently, the properties of the polymer obtained. Looking for new products, we obtained a series of ethylene,propylene,1-decene terpolymers with the metallocenic system rac -ethylene bisindenyl zirconium dichloride/methylaluminoxane. We performed a complete 13C NMR characterization of these terpolymers qualitatively and quantitatively. Here we present a detailed study of the 13C NMR chemical shifts, triad sequence distributions, monomer average sequence lengths, and reactivity ratios for these terpolymers. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 2531,2541, 2003 [source] Microstructure analysis and thermal property of copolymers made of glycolide and ,-caprolactone by stannous octoateJOURNAL OF POLYMER SCIENCE (IN TWO SECTIONS), Issue 4 2002Ji Won Pack Abstract Glycolide (GL) and ,-caprolactone (CL) were copolymerized in bulk at relatively high temperatures using stannous octoate as a catalyst. To investigate the relationship among microstructure, thermal properties, and crystallinity, three series of copolymers prepared at various reaction temperatures, times, and comonomer feed ratios were prepared and characterized by 1H and 13C NMR, DSC, and wide-angle X-ray diffraction (WAXD). The 600-MHz 1H NMR spectra provided information about not only the copolymer compositions but also about the chain microstructure. The reactivity ratios (rG and rC) were calculated from the monomer sequences and were 6.84 and 0.13, respectively. In terms of overall feed compositions, the sequence lengths of the glycolyl units calculated from the reactivity ratios exceeded those measured from the polymeric products. Mechanistic considerations based on reactivity ratios, monomer consumption data, and average sequence lengths are discussed. The unusual phase diagram of GL/CL copolymers implies that the copolymer melting temperature does not depend on its composition alone but rather on the nature of the sequence distribution. The DSC and WAXD measurements show a close relationship between polymer crystallinity and the nature of the polymer sequence. © 2002 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 40: 544,554, 2002; DOI 10.1002/pola.10123 [source] Ceric(IV) ion-induced graft copolymerization of acrylamide and ethyl acrylate onto cellulosePOLYMER INTERNATIONAL, Issue 2 2006Prof. Kailash C Gupta Abstract Graft copolymerization of acrylamide (AAm) and ethyl acrylate (EA) onto cellulose has been carried out from their binary mixtures using ceric ammonium nitrate (CAN) as an initiator in the presence of nitric acid at 25 ± 1 °C. The extent of acrylamide grafting increased in the presence of the EA comonomer. The composition of the grafted chains (FAAm = 0.52) was found to be constant during the feed molarity variation from 7.5 × 10,2 to 60.0 × 10,2 mol L,1, whereas the composition of the grafted chains (FAAm) was found to be dependent on feed composition (fAAm) and reaction temperature. The effects of ceric(IV) ion concentration, reaction time and temperature on the grafting parameters have been studied. The grafting parameters showed an increasing trend up to 6.0 × 10,3 mol L,1 concentration of CAN at a feed molarity of 30.0 × 10,2 mol L,1 and showed a decreasing trend on further increasing the concentration of CAN (>6.0 × 10,3 mol L,1) at a constant concentration of nitric acid (5.0 × 10,2 mol L,1). The composition of the grafted chains (FAAm) was determined by IR spectroscopy and nitrogen content and the data obtained then used to determine the reactivity ratios of the acrylamide (r1) and ethyl acrylate (r2) comonomers by using a Mayo and Lewis plot. The reactivity ratios of acrylamide and ethyl acrylate were found to be r1 = 0.54 and r2 = 1.10, respectively, and hence the sequence lengths of acrylamide (m,M1) and ethyl acrylate (m,M2) in the grafted chains are arranged in an alternating form, as the product of the reactivity ratios of acrylamide and ethyl acrylate (r1 × r2) is less than unity. The rate of graft copolymerization of the comonomers onto cellulose was found to be dependant on the ,squares' of the concentrations of the comonomers and on the ,square root' of the concentration of ceric ammonium nitrate. The energy of activation (,Ea) of graft copolymerzation was found to be 5.57 kJ mol,1 within the temperature range from 15 to 50 °C. On the basis of the results, suitable reaction steps have been proposed for the graft copolymerzation of acrylamide and ethyl acrylate comonomers from their mixtures. Copyright © 2005 Society of Chemical Industry [source] |