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Sample Preparation Procedure (sample + preparation_procedure)
Selected AbstractsSample preparation procedures for biological atomic force microscopyJOURNAL OF MICROSCOPY, Issue 3 2005K. EL KIRAT Summary Since the late 1980s, atomic force microscopy (AFM) has been increasingly used in biological sciences and it is now established as a versatile tool to address the structure, properties and functions of biological specimens. AFM is unique in that it provides three-dimensional images of biological structures, including biomolecules, lipid films, 2D protein crystals and cells, under physiological conditions and with unprecedented resolution. A crucial prerequisite for successful, reliable biological AFM is that the samples need to be well attached to a solid substrate using appropriate, nondestructive methods. In this review, we discuss common techniques for immobilizing biological specimens for AFM studies. [source] Growth and characterization of Nd, Yb , yttrium oxide nanopowders obtained by sol-gel methodCRYSTAL RESEARCH AND TECHNOLOGY, Issue 12 2007A. Rzepka Abstract Nanopowders of Y2O3 pure, doped and codoped by Nd3+, Yb3+ were obtained by sol-gel method. Solution with ethylene glycol was choosed as the proper solution where crystallites of powder with Nd and Yb dopants had the same size. Finally the one-phased compounds of Y2O3 doped 0.5 at% Nd and 1, 2 or 4 at% Yb were obtained. Grain growth and their morphology were investigated in various temperature and time of heating. The changes of crystallite sizes and lattice constants in relation to the heating time and temperature for the composition Y2O3 doped 0.5 at% Nd and 2 at% Yb are presented. Y2O3 containing 0,5 at% of Nd exhibits intense luminescence bands centered at 920 nm, 1100 nm and 1360 nm whereas a single band at about 1020 nm appears in samples co-doped with neodymium and ytterbium. Luminescence spectra recorded did not depend on the sample preparation procedure and size of grains. OH impurity affects critically the relaxation dynamics of luminescent ion in nanopowders. (© 2007 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Adhesion Characteristics of PDMS Surfaces During Repeated Pull-Off Force Measurements,ADVANCED ENGINEERING MATERIALS, Issue 5 2010Elmar Kroner Abstract To mimic the adhesive effects of gecko toes, artificial surfaces have been manufactured recently using polydimethylsiloxanes (PDMS). However, the effects of repeated contacts on the adhesive properties remain largely unexplored. In this paper we report on the effect of repeated pull-off force measurements on the adhesion behavior of PDMS (polymer kit Sylgard 184, Dow Corning) tested with a borosilicate glass probe. A decrease in pull-off force with increase in number of test cycles is found until a plateau is reached. The initial value and the rate of change in pull-off force strongly depend on the sample preparation procedure, including curing time and cross-linking. It is proposed that the behavior is due to steady coverage of the probe with free oligomers. The results are crucial for developing reusable, durable, and residue-free bioinspired adhesives. [source] Direct Current Plasma Emission Spectrometric Determination of Major, Minor and Trace Elements in Microwave Oven Acid Leachates of Powdered Whole Coal SamplesGEOSTANDARDS & GEOANALYTICAL RESEARCH, Issue 1 2005Sandro Fadda DCP-AES; échantillons de charbon; four à micro-ondes; éléments facilement ionisables; effets de matrice. Major concentrations of Al2O3, Fe2O3, MgO, CaO, Na2O and K2O, minor levels of TiO2, P2O5 and thirty petrologically, geochemically and environmentally significant trace elements have been determined in microwave oven acid leachates of whole powdered coal samples by direct current plasma-atomic emission spectrometry (DCP-AES). A single sample preparation procedure was suitable for all the determinations with no additional dilution step for major elements solution. Dried samples (0.5 g) were treated in low-pressure PFA digestion vessels with HF/HCl/HNO3/HClO4 acids to quantitatively extract the analytes from the bulk material, while leaving the major part of organic matrix as a residue. The major constituents of geological samples, in particular the easily ionised elements (EIEs) such as alkali and alkaline earths, may complicate the instrumental determinations in DCP-AES because of differential enhancements of elemental emission intensities and stray light interferences. Taking account of these factors, the coal matrix is considered to have very low major oxide totals as compared to many other common geo-environmental and related materials (rocks, sediments, soil, ashes etc.). The sample size employed here, while yielding a relatively concentrated solution to cover a wide range of elemental determinations, provided a sample matrix that significantly diminished interferences for DCP measurements. The need for closely matching the unknowns and calibrators was eliminated except for overall acidity and an excess quantity of caesium for EIE buffering. Calibration of the spectrometer was accomplished by simple aqueous single element solutions as high concentration calibrators in addition to a reagent blank as a low concentration calibrator. Two point working curves were established to allow for the maximum concentrations of each element expected in the unknowns. The precision of determinations under routine conditions as well as the reproducibility of the leaching and precision of instrumental measurements have been evaluated. Relative standard deviations (RSD) were of 1,2% for those elements whose concentrations in solid samples were well above the limits of quantification. Method detection limits in the buffered solutions were also evaluated. To evaluate the accuracy of the microwave oven-DCP method a suite of eight certified coal reference materials of differing rank, were analysed with good agreement with the certified and/or available published data. Results are presented for the uncertified major oxides in the AR series reference materials. Les concentrations en éléments majeurs: Al2O3, Fe2O3, MgO, CaO, Na2O et K2O, en éléments mineurs TiO2, P2O5 et en 30 éléments en trace dont le comportement est important en Pétrologie, en Géochimie et en Environnement, ont été analysées par spectrométrie d'émission atomique à plasma à courant direct (DCP-AES), dans des lessivages acides effectués dans un four à micro-ondes sur des échantillons de charbon mis en poudre. Ce mode préparatoire unique est adaptéà toutes les déterminations sans qu'il soit nécessaire d'effectuer une dilution supplémentaire pour l'analyse des éléments majeurs. Les échantillons préalablement desséchés (0.5 g) sont traités dans les pots de PFA de basse pression, avec un mélange d'acides HF/HCl/HNO3/HClO4, afin d'extraire quantitativement les analytes du matériel géologique, tout en laissant la plus grande part de la matrice organique sous forme résiduelle. Les constituants majeurs de ces échantillons géologiques, en particulier les éléments facilement ionisables (EIEs) tels que les alcalins et les alcalino-terreux, peuvent compliquer l'analyse en DCP-AES à cause des rendements variables des intensités d'émission élémentaires et des interférences de raies de lumière. Mais là dessus, la matrice de charbon se révèle être bien plus pauvre en oxydes majeurs que les autres matériaux géologiques, environnementaux ou de type proche (roches, sédiments, sols, cendres). La taille d'échantillon retenue ici, tout en fournissant une solution relativement concentrée qui permet la détermination de beaucoup d'éléments, fournit une matrice qui diminue significativement les interférences lors de la mesure par DCP-AES. Le besoin d'avoir les solutions d'échantillons et les solutions de calibration avec des matrices très proches est donc éliminé, mis à part pour l'acidité totale et la quantité excessive de Césium pour tamponner les EIE. La calibration du spectromètre est faite avec des solutions mono- élémentaires aqueuses, pour déterminer les points de concentrations élevées et avec le blanc de réactifs pour le point de concentration basse. Les courbes de calibrations sont déterminées avec 2 points, pour autoriser l'analyse de concentrations maximales pour chaque élément dans les échantillons inconnus. La précision des déterminations en conditions de routine ainsi que la reproductibilité de l'opération de lessivage et la précision instrumentale des analyses ont étéévaluées. Les déviations standards relatives (RSD) sont de 1,2% pour tout élément dont les concentrations dans le solide sont au dessus des limites de quantification. Les limites de détection de la méthode dans les solutions tamponnées ont aussi étéévaluées. Enfin, pour évaluer la justesse de cette méthode "micro-ondes - DCP" huit charbons certifiés matériaux de référence de différents types ont été analysés, et sont en bon accord avec les données certifiées ou seulement disponibles publiées. Les données sur un certain nombre d'oxydes d'éléments majeurs actuellement non certifiés sont présentées pour les matériaux de référence AR. [source] Bioanalysis of pentoxifylline and related metabolites in plasma samples through LC-MS/MSBIOMEDICAL CHROMATOGRAPHY, Issue 6 2010Daniela Iuliana Sora Abstract Analytical aspects related to the assay of pentoxifylline (PTX), lisofylline (M1) and carboxypropyl dimethylxanthine (M5) metabolites are discussed through comparison of two alternative analytical methods based on liquid chromatography separation and atmospheric pressure electrospray ionization tandem mass spectrometry detection. One method is based on a ,pure' reversed-phase liquid chromatography mechanism, while the second one uses the additional polar interactions with embedded amide spacers linking octadecyl moieties to the silicagel surface (C-18 Aqua stationary phase). In both cases, elution is isocratic. Both methods are equally selective and allows separation of unknowns (four species associated to PTX, two species associated to M1) detected through specific mass transitions of the parent compounds and owning respective structural confirmation. Plasma concentration,time patterns of these compounds follow typical metabolic profiles. It has been advanced that in-vivo formation of conjugates of PTX and M1 is possible, such compounds being cleaved back to the parent ones within the ion source. The first method was associated with a sample preparation procedure based on plasma protein precipitation by strong organic acid addition. The second method used protein precipitation by addition of a water miscible organic solvent. Both analytical methods were fully validated and used to assess bioequivalence between a prolonged release generic formulation and the reference product, under multidose and single dose approaches. Copyright © 2009 John Wiley & Sons, Ltd. [source] Measurement of fexofenadine concentration in micro-sample human plasma by a rapid and sensitive LC-MS/MS employing protein precipitation: application to a clinical pharmacokinetic studyBIOMEDICAL CHROMATOGRAPHY, Issue 3 2010Daqing Guo Abstract A simple, rapid and sensitive liquid chromatography/positive ion electro-spray tandem mass spectrometry method (LC-MS/MS) was developed and validated for the quantification of fexofenadine with 100,,L human plasma employing glipizide as internal standard (IS). Protein precipitation was used in the sample preparation procedure. Chromatographic separation was achieved on a reversed-phase C18 column (5,,m, 100 × 2.1,mm) with methanol,:,buffer (containing 10,mmol/L ammonium acetate and 0.1% formic acid; 70,:,30, v/v) as mobile phase. The total chromatographic runtime was approximately 3.0,min with retention time for fexofenadine and IS at approximately 1.9 and 2.1,min, respectively. Detection of fexofenadine and IS was achieved by LC-MS/MS in positive ion mode using 502.1 , 466.2 and 446.0 , 321.1 transitions, respectively. The method was proved to be accurate and precise at linearity range of 1,600,ng/mL with a correlation coefficient (r) of ,0.9976. The validated method was applied to a pharmacokinetic study in human volunteers following oral administration of 60 or 120,mg fexofenadine formulations, successfully. Copyright © 2009 John Wiley & Sons, Ltd. [source] Role of the Preparation Procedure in the Formation of Spherical and Monodisperse Surfactant/Polyelectrolyte ComplexesCHEMISTRY - A EUROPEAN JOURNAL, Issue 21 2007Yuxia Luan Dr. Abstract Complexes formed by a double-tail cationic surfactant, didodecyldimethyl ammonium bromide, and an anionic polyelectrolyte, an alternating copolymer of poly(styrene-alt-maleic acid) in its sodium salt form, were investigated with respect to variation in the charge ratio (x) between the polyelectrolyte negative charges and the surfactant positive charges. The morphology and microstructure of the complexes were studied by light microscopy and small-angle X-ray scattering for different preparation conditions. Independent of the sample preparation procedure and the charge ratio x, the X-ray results show that the microscopic structure of the complexes is a condensed lamellar phase. By contrast, the morphology of the complexes changes dramatically with the preparation procedure. The complexes formed by mixing a surfactant solution and a polyelectrolyte solution strongly depend on x and are always extremely heterogeneous in size and shape. Surprisingly, we show that, when the two solutions interdiffuse slowly, spherical complexes of micrometric and rather uniform size are systematically obtained, independently on the initial relative amount of surfactant and polyelectrolyte. The mechanism for the formation of these peculiar complexes is discussed. [source] Characterization of natural wax esters by MALDI-TOF mass spectrometryJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 1 2009Vladimír Vrkoslav Abstract The applicability of matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS) to the analysis of wax esters (WEs) was investigated. A series of metal salts of 2,5-dihydroxybenzoic acid (DHB) was synthesized and tested as possible matrices. Alkali metal (Li, Na, K, Rb, Cs) and transition metal (Cu, Ag) salts were studied. The matrix properties were evaluated, including solubility in organic solvents, threshold laser power that should be applied for successful desorption/ionization of WEs, the nature of the matrix ions and the mass range occupied by them, and the complexity of the isotope clusters for individual metals. Lithium salt of dihydroxybenzoic acid (LiDHB) performed the best and matrices with purified lithium isotopes (6LiDHB or 7LiDHB) were recommended for WEs. Three sample preparation procedures were compared: (1) mixing the sample and matrix in a glass vial and deposition of the mixture on a MALDI plate (Mix), (2) deposition of sample followed by deposition of matrix (Sa/Ma), and (3) deposition of matrix followed by deposition of sample (Ma/Sa). Morphology of the samples was studied by scanning electron microscopy. The best sample preparation technique was Ma/Sa with the optimum sample to matrix molar ratio 1 : 100. Detection limit was in the low picomolar range. The relative response of WEs decreased with their molecular weight, and minor differences between signals of saturated and monounsaturated WEs were observed. MALDI spectra of WEs showed molecular adducts with lithium [M + Li]+. Fragments observed in postsource decay (PSD) spectra were related to the acidic part of WEs [RCOOH + Li]+ and they were used for structure assignment. MALDI with LiDHB was used for several samples of natural origin, including insect and plant WEs. A good agreement with GC/MS data was achieved. Moreover, MALDI allowed higher WEs to be analyzed, up to 64 carbon atoms in Ginkgo biloba leaves extract. Copyright © 2008 John Wiley & Sons, Ltd. [source] Gel-free sample preparation for the nanoscale LC-MS/MS analysis and identification of low-nanogram protein samplesJOURNAL OF SEPARATION SCIENCE, JSS, Issue 14 2007Marco Gaspari Abstract Protein identification at the low nanogram level could in principle be obtained by most nanoscale LC-MS/MS systems. Nevertheless, the complex sample preparation procedures generally required in biological applications, and the consequent high risk of sample losses, very often hamper practical achievement of such low levels. In fact, the minimal amount of protein required for the identification from a gel band or spot, in general, largely exceeds the theoretical limit of identification reachable by nanoscale LC-MS/MS systems. A method for the identification of low levels of purified proteins, allowing limits of identification down to 1 ng when using standard bore, 75 ,m id nanoscale LC-MS/MS systems is here reported. The method comprises an offline two-step sample cleanup, subsequent to protein digestion, which is designed to minimize sample losses, allows high flexibility in the choice of digestion conditions and delivers a highly purified peptide mixture even from "real world" digestion conditions, thus allowing the subsequent nanoscale LC-MS/MS analysis to be performed in automated, unattended operation for long series. The method can be applied to the characterization of low levels of affinity purified proteins. [source] Recent advances in mycotoxin determination in food and feed by hyphenated chromatographic techniques/mass spectrometryMASS SPECTROMETRY REVIEWS, Issue 1 2006Stefano Sforza Abstract Mycotoxins are fungal toxins produced by molds, which occur universally in food and feed derivatives, and are produced under certain environmental conditions in the field before harvest, post-harvest, during storage, processing, and feeding. Mycotoxin contamination is one of the most relevant and worrisome problem concerning food and feed safety because it can cause a variety of toxic acute and chronic effects in human and animals. In this review we report the use of mass spectrometry in connection with chromatographic techniques for mycotoxin determination by considering separately the most diffuse class of mycotoxins: patulin, aflatoxins, ochratoxin A, zearalenone, trichothecenes, and fumonisins. Although the selectivity of mass spectrometry is unchallenged if compared to common GC and LC detection methods, accuracy, precision, and sensitivity may be extremely variable concerning the different mycotoxins, matrices, and instruments. The sensitivity issue may be a real problem in the case of LC/MS, where the response can be very different for the different ionization techniques (ESI, APCI, APPI). Therefore, when other detection methods (such as fluorescence or UV absorbance) can be used for the quantitative determination, LC/MS appears to be only an outstanding confirmatory technique. In contrast, when the toxins are not volatile and do not bear suitable chromophores or fluorophores, LC/MS appears to be the unique method to perform quantitative and qualitative analyses without requiring any derivatization procedure. The problem of exact quantitative determination in GC/MS and LC/MS methods is particularly important for mycotoxin determination in food, given the high variability of the matrices, and can be solved only by the use of isotopically labeled internal standards or by the use of ionization interfaces able to lower matrix effects and ion suppressions. When the problems linked to inconstant ionization and matrix effects will be solved, only MS detectors will allow to simplify more and more the sample preparation procedures and to avoid clean-up procedures, making feasible low-cost, high-throughput determination of mycotoxins in many different food matrices. © 2005 Wiley Periodicals, Inc. [source] Desulfurization of cysteine-containing peptides resulting from sample preparation for protein characterization by mass spectrometryRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 3 2010Zhouxi Wang In this study, we have examined two cysteine modifications resulting from sample preparation for protein characterization by mass spectrometry (MS): (1) a previously observed conversion of cysteine into dehydroalanine, now found in the case of disulfide mapping and (2) a novel modification corresponding to conversion of cysteine into alanine. Using model peptides, the conversion of cysteine into dehydroalanine via , -elimination of a disulfide bond was seen to result from the conditions of typical tryptic digestion (37°C, pH 7.0,9.0) without disulfide reduction and alkylation. Furthermore, the surprising conversion of cysteine into alanine was shown to occur by heating cysteine-containing peptides in the presence of a phosphine (tris(2-carboxyethyl)phosphine hydrochloride (TCEP)). The formation of alanine from cysteine, investigated by performing experiments in H2O or D2O, suggested a radical-based desulfurization mechanism unrelated to , -elimination. Importantly, an understanding of the mechanism and conditions favorable for cysteine desulfurization provides insight for the establishment of improved sample preparation procedures of protein analysis. Copyright © 2010 John Wiley & Sons, Ltd. [source] Dodging matrix effects in liquid chromatography tandem mass spectrometric assays,compilation of key learnings and perspectivesBIOMEDICAL CHROMATOGRAPHY, Issue 5 2009Nuggehally R. Srinivas Abstract Triple quad liquid chromatography mass spectrometric assays (LC/MS/MS) have revolutionized the analysis of drug(s)/metabolite(s) with exceptional speed, sensitivity and selectivity features. From inception to date, several new and innovative features have been regularly proposed by researchers to further enhance the value in the applicability of this analytical tool. However, owing to such compressed run times and scanty sample preparation procedures, LC/MS/MS assays that are not fully optimized generally have issues of matrix effects, where ionization potential is either suppressed or enhanced due to the presence of other materials (endogenous/exogenous) in the matrix. By definition, even co-medications, isomeric or isobaric impurities, and drug excipients used in dosing solutions could also potentially contribute to matrix effects. This article captures some of the interesting work carried out by researchers to understand and handle matrix effects. Additionally, it provides perspectives to effectively deal with matrix effects. Copyright © 2008 John Wiley & Sons, Ltd. [source] | ||||||||||