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Routine Application (routine + application)
Selected AbstractsIn situ determination of sulfate turnover in peatlands: A down-scaled push,pull tracer technique,JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE, Issue 5 2008Tobias Goldhammer Abstract Bacterial sulfate reduction (BSR) is a key process in anaerobic respiration in wetlands and may have considerable impacts on methane emissions. A method to determine sulfate production and consumption in situ is lacking to date. We applied a single-well, injection-withdrawal tracer test for the in situ determination of potential sulfate turnover in a northern temperate peatland. Piezometers were installed in three peat depth levels (20, 30, and 50,cm) during summer 2004, and three series of injection-withdrawal cycles were carried out over a period of several days. Turnover rates of sulfate, calculated from first-order-reaction constant k (,0.097 to 0.053 h,1) and pore-water sulfate concentrations (approx. 10 µmol L,1), ranged from ,1.3 to ,9.0 nmol cm,3 d,1 for reduction and from +0.7 to +25.4 nmol cm,2 d,1 for production, which occurred after infiltration of water following a heavy rainstorm. Analysis of stable isotopes in peat-water sulfate revealed slightly increasing ,34S values and decreasing sulfate concentrations indicating the presence of BSR. The calculated low sulfur-fractionation factors of <2, are in line with high sulfate-reduction rates during BSR. Routine application will require technical optimization, but the method seems a promising addition to common ex situ techniques, as the investigated soil is not structurally altered. The method can furthermore be applied at low expense even in remote locations. [source] A systematic approach to molecular quantitative determination of mixed chimaerism following allogeneic bone marrow transplantation: an analysis of its applicability in a group of patients with severe aplastic anaemiaEUROPEAN JOURNAL OF HAEMATOLOGY, Issue 3 2004Rocío Hassan Abstract:, Mixed chimaerism (MC) following allogeneic bone marrow transplantation (allo-BMT) is defined as the persistent cohabitation of haematopoietic cells from recipients and donors. Its kinetics, clinical implications and more efficient laboratory approaches for MC detection are the object of ongoing research in view of the possibility of developing useful markers. Here we describe a sequential analysis of chimaerism using variable number of tandem repeat (VNTR) polymerase chain reaction (PCR) followed by quantitative, fluorescent labelled, short tandem repeat (STR) PCR. A set of four, highly discriminative VNTR and four STR markers was used to assess chimaerism. Sensitivity and regression analysis indicated that this approach was reliable for routine application in a single BMT centre. We studied 12 patients with severe aplastic anaemia (SAA) who had received allo-BMT, and had been conditioned with cyclosphosphamide (Cy) with or without anti-thymocyte globulin (ATG). We found a 50% prevalence of MC in the whole group, with levels between 4% and 37% of recipient cells. A sustained stable MC pattern after BMT was characteristic of the Cy-only conditioned patients but was also recorded in one patient treated with the Cy + ATG regime who showed a sustained MC pattern over a period of 24 months post-BMT. In none of our patients, MC was associated with an increased risk of graft rejection in a median follow-up of 39.5 months. [source] Early Pragian conodont-based correlations between the Barrandian area and the Spanish Central PyreneesGEOLOGICAL JOURNAL, Issue 5 2007Ladislav Slavík Abstract Occurrences and distribution of extremely scarce eognathodontids do not facilitate reliable correlation across the European regions. The correlation of the traditional early Pragian of the Prague Synform (a part of the classical Barrandian area) and the Spanish Central Pyrenees (section Segre 1) is based on conodont taxa of the Icriodus steinachensis and the Pelekysgnathus serratus stocks. This correlation has the potential to be extended to other peri-Gondwanan regions where this scarcity of eognathodontid faunas exists as well. Application of the morphotype subdivision in I. steinachensis enables approximation of the beginning of the Pragian in the Pyrenees. It is based on the entry of I. steinachensis beta morphotype; it enters together with early eognathodontid taxa in the Barrandian sections. These correlations show that routine application of certain zonal concepts can lead to misleading conclusions. Copyright © 2007 John Wiley & Sons, Ltd. [source] The Revised International Health Regulations and Their Relevance to Travel MedicineJOURNAL OF TRAVEL MEDICINE, Issue 3 2007MFPHM, MRCGP, Max Hardiman MBChB The revised International Health Regulations 2005 (IHR 2005) will enter into force in June 2007. Here we give an overview of the IHR (2005) and their relevance to the travel medicine practitioner. The two specific applications of the IHR (2005) most likely to be encountered by travelers are the disinsection of aircraft to prevent importation of disease vectors and the yellow fever vaccination requirements imposed by certain countries. A model of the revised international certificate of vaccination or prophylaxis will be shown. The IHR (2005) has moved away from the definition of fixed maximum measures relating to specific diseases and in their place focus on the issuance of context-specific recommendations, made either on a temporary emergency basis or established for routine application in respect of ongoing risks of disease spread. [source] Embedding 3D models of biological specimens in PDF publicationsMICROSCOPY RESEARCH AND TECHNIQUE, Issue 11 2008Bernhard Ruthensteiner Abstract By providing two examples, the option for embedding 3D models in electronic versions of life science publications is presented. These examples, presumably representing the first such models published, are developmental stages of an evertebrate (Patella caerulea, Mollusca) and a vertebrate species (Psetta maxima, Teleostei) obtained from histological section series reconstruction processed with the software package Amira. These surface rendering models are particularly suitable for a PDF file because they can easily be transformed to a file format required and components may be conveniently combined and hierarchically arranged. All methodological steps starting from specimen preparation until embedding of resulting models in PDF files with emphasis on conversion of Amira data to the appropriate 3D file format are explained. Usability of 3D models in PDF documents is exemplified and advantages over 2D illustrations are discussed, including better explanation capabilities for spatial arrangements, higher information contents, and limiting options for disguising results by authors. Possibilities for additional applications reaching far beyond the examples presented are suggested. Problems such as long-term compatibility of file format and hardware plus software, editing and embedding of files, file size and differences in information contents between printed and electronic version will likely be overcome by technical development and increasing tendency toward electronic at the cost of printed publications. Since 3D visualization plays an increasing role in manifold disciplines of science and appropriate tools for the popular PDF format are readily available, we propose routine application of this way of illustration in electronic life science papers. Microsc. Res. Tech., 2008. © 2008 Wiley-Liss, Inc. [source] Remote, Wireless, Ambulatory Monitoring of Implantable Pacemakers, Cardioverter Defibrillators, and Cardiac Resynchronization Therapy Systems: Analysis of a Worldwide DatabasePACING AND CLINICAL ELECTROPHYSIOLOGY, Issue 2007ARNAUD LAZARUS M.D. Study Objective: To describe the daily routine application of a new telemonitoring system in a large population of cardiac device recipients. Methods: Data transmitted daily and automatically by a remote, wireless Home MonitoringÔ system (HM) were analyzed. The average time gained in the detection of events using HM versus standard practice and the impact of HM on physician workload were examined. The mean interval between device interrogations was used to compare the rates of follow-up visits versus that recommended in guidelines. Results: 3,004,763 transmissions were made by 11,624 recipients of pacemakers (n = 4,631), defibrillators (ICD; n = 6,548), and combined ICD + cardiac resynchronization therapy (CRT-D) systems (n = 445) worldwide. The duration of monitoring/patient ranged from 1 to 49 months, representing 10,057 years. The vast majority (86%) of events were disease-related. The mean interval between last follow-up and occurrence of events notified by HM was 26 days, representing a putative temporal gain of 154 and 64 days in patients usually followed at 6- and 3-month intervals, respectively. The mean numbers of events per patient per month reported to the caregivers for the overall population was 0.6. On average, 47.6% of the patients were event-free. The mean interval between follow-up visits in patients with pacemakers, single-chamber ICDs, dual chamber ICDs, and CRT-D systems were 5.9 ± 2.1, 3.6 ± 3.3, 3.3 ± 3.5, and 1.9 ± 2.9 months, respectively. Conclusions: This broad clinical application of a new monitoring system strongly supports its capability to improve the care of cardiac device recipients, enhance their safety, and optimize the allocation of health resources. [source] Localization of single-copy T-DNA insertion in transgenic shallots (Allium cepa) by using ultra-sensitive FISH with tyramide signal amplificationTHE PLANT JOURNAL, Issue 6 2001Ludmila I. Khrustaleva Summary The sensitivity of fluorescence in situ hybridization (FISH) for mapping plant chromosomes of single-copy DNA sequences is limited. We have adapted for plant cytogenetics a new signal-amplification method termed tyramide-FISH (Tyr-FISH). Until present this technique has only been applied to human chromosomes. The method is based on enzymatic deposition of fluorochrome-conjugated tyramide. With Tyr-FISH it was possible to detect target T-DNA sequences on plant metaphase chromosomes as small as 710 bp without using a cooled CCD camera. Short detection time and high sensitivity, in combination with a low background, make the Tyr-FISH method very suitable for routine application in plant cytogenetic research. With Tyr-FISH we analysed the position of T-DNA inserts in transgenic shallots. We found that the inserts were preferentially located in the distal region of metaphase chromosomes. Sequential fluorescence in situ hybridization with a 375 bp satellite sequence suggested that a specific T-DNA insert was located within the satellite sequence hybridization region on a metaphase chromosome. Analysis of less-condensed prophase and interphase chromosomes revealed that the T-DNA was integrated outside the satellite DNA-hybridization region in a more proximal euchromatin region. [source] Spectral phase-corrected GRAPPA reconstruction of three-dimensional echo-planar spectroscopic imaging (3D-EPSI)MAGNETIC RESONANCE IN MEDICINE, Issue 5 2007Xiaoping Zhu Abstract MR spectroscopic (MRS) images from a large volume of brain can be obtained using a 3D echo-planar spectroscopic imaging (3D-EPSI) sequence. However, routine applications of 3D-EPSI are still limited by a long scan time. In this communication, a new approach termed "spectral phase-corrected generalized autocalibrating partially parallel acquisitions" (SPC-GRAPPA) is introduced for the reconstruction of 3D-EPSI data to accelerate data acquisition while preserving the accuracy of quantitation of brain metabolites. In SPC-GRAPPA, voxel-by-voxel spectral phase alignment between metabolite 3D-EPSI from individual coil elements is performed in the frequency domain, utilizing the whole spectrum from interleaved water reference 3D-EPSI for robust estimation of the zero-order phase correction. The performance of SPC-GRAPPA was compared with that of fully encoded 3D-EPSI and conventional GRAPPA. Analysis of whole-brain 3D-EPSI data reconstructed by SPC-GRAPPA demonstrates that SPC-GRAPPA with an acceleration factor of 1.5 yields results very similar to those obtained by fully encoded 3D-EPSI, and is more accurate than conventional GRAPPA. Magn Reson Med 57:815,820, 2007. © 2007 Wiley-Liss, Inc. [source] Image analysis and morphometry in the diagnosis of breast cancerMICROSCOPY RESEARCH AND TECHNIQUE, Issue 2 2002Joan Gil Abstract Image Analysis, a complicated field still in the early stages of application to Pathology, has the capability of rendering major contributions to the diagnosis, prognosis, and management of malignancies of the breast. The present review summarizes the main problems and the general approach to the use of this technique for quantitating immunohistochemical stain results, obtaining DNA histograms, and making de novo diagnoses in routine materials of the Pathology service. In the case of diagnosis, the main steps are sampling, segmentation, and measures of chromatin texture. Currently, the limiting factor for all routine applications of image analysis is probably the absence of a reliable automatic nuclear segmentation. Microsc. Res. Tech. 59:109,118, 2002. © 2002 Wiley-Liss, Inc. [source] Absolute measurement of lattice parameter in single crystals and epitaxic layers on a double-crystal X-ray diffractometerACTA CRYSTALLOGRAPHICA SECTION A, Issue 3 2005M. Fatemi Details of the recently developed `zone technique' for the absolute measurement of lattice parameter and strain in single-crystal solids and thin films are presented. The method is based on measuring X-ray rocking curves from a few equatorial planes within a suitable zone and correcting their peak positions at once with a single zero offset. In contrast to the comparative method, which usually requires use of two opposite azimuthal directions, those in the zone technique can often be completed in only one azimuthal setting. A typical strained layer in the cubic system can be fully and rapidly characterized with only three rocking curves. The technique is suitable for routine applications under typical laboratory conditions, and for high-precision measurements of nearly perfect crystals in a controlled environment, with a potential parts in 10,million accuracy. This degree of accuracy is a direct consequence of the zero offset correction procedure, which effectively cancels a large portion of the misalignment errors in the diffractometer. The use of the (n,,n) geometry substantially reduces the errors of eccentricity compared to the Bond technique, and its stronger reflections enable the measurement of small samples about 0.05,mm in length with relative ease. The technique is illustrated with examples, and its extension to the triple-axis (,,2,) instruments is discussed. [source] Three-dimensional inversion of automatic resistivity profiling dataARCHAEOLOGICAL PROSPECTION, Issue 4 2009Nikos G. Papadopoulos Abstract Geophysical investigations through mobile multi-electrode systems, such as the automatic resistivity profiling (ARP) method, can increase the size of the surveyed areas without jeopardizing the spatial resolution of the survey. The representation of the apparent resistivity data in maps corresponding to the different measuring dipoles is sufficient in most routine applications for outlining the buried archaeological structures. In specific cases where a more quantitative interpretation of the apparent resistivity data is demanded, a three-dimensional resistivity inversion can provide the necessary tool for this purpose. This work investigates the possibilities and limitations of the three-dimensional resistivity inversion in processing the ARP data. A three-dimensional finite element smoothness-constrained inversion algorithm was used. The active constraint balancing (ACB) method was also applied in order to enhance the stability and the resolving power of the inversion procedure. Resistivity models that are commonly encountered in archaeological exploration were used to generate synthetic apparent resistivity data using a three-dimensional finite element forward modelling program. Inversion of the synthetic data showed that the maximum investigation depth of the ARP method is comparable to the length of the larger receiving dipole and cannot exceed the 2,2.5,m for the particular ARP device tested in this work. Archaeological structures buried within this depth range can be effectively mapped, while the resolution of the subsurface structures is related to the data acquisition parameters. The inversion algorithm was also used to reconstruct the three-dimensional resistivity distribution from the ARP data set collected from the Andilly archaeological site in France. The results effectively showed that the three-dimensional inversion can act as a complementary tool in acquiring a more quantitative interpretation model of the buried archaeological features. Copyright © 2009 John Wiley & Sons, Ltd. [source] Capturing of cell culture-derived modified Vaccinia Ankara virus by ion exchange and pseudo-affinity membrane adsorbersBIOTECHNOLOGY & BIOENGINEERING, Issue 4 2010Michael W. Wolff Abstract Smallpox is an acute, highly infectious viral disease unique to humans, and responsible for an estimated 300,500 million deaths in the 20th century. Following successful vaccination campaigns through the 19th and 20th centuries, smallpox was declared eradicated by the World Health Organization in 1980. However, the threat of using smallpox as a biological weapon prompted efforts of some governments to produce smallpox vaccines for emergency preparedness. An additional aspect for the interest in smallpox virus is its potential use as a platform technology for vector vaccines. In particular, the latter requires a high safety level for routine applications. IMVAMUNE®, a third generation smallpox vaccine based on the attenuated Modified Vaccinia Ankara (MVA) virus, demonstrates superior safety compared to earlier generations and represents therefore an interesting choice as viral vector. Current downstream production processes of Vaccinia virus and MVA are mainly based on labor-intensive centrifugation and filtration methods, requiring expensive nuclease treatment in order to achieve sufficient low host-cell DNA levels for human vaccines. This study compares different ion exchange and pseudo-affinity membrane adsorbers (MA) to capture chicken embryo fibroblast cell-derived MVA-BN® after cell homogenization and clarification. In parallel, the overall performance of classical bead-based resin chromatography (Cellufine® sulfate and Toyopearl® AF-Heparin) was investigated. The two tested pseudo-affinity MA (i.e., sulfated cellulose and heparin) were superior over the applied ion exchange MA in terms of virus yield and contaminant depletion. Furthermore, studies confirmed an expected increase in productivity resulting from the increased volume throughput of MA compared to classical bead-based column chromatography methods. Overall virus recovery was ,60% for both pseudo-affinity MA and the Cellufine® sulfate resin. Depletion of total protein ranged between 86% and 102% for all tested matrices. Remaining dsDNA in the product fraction varied between 24% and 7% for the pseudo-affinity chromatography materials. Cellufine® sulfate and the reinforced sulfated cellulose MA achieved the lowest dsDNA product contamination. Finally, by a combination of pseudo-affinity with anion exchange MA a further reduction of host-cell DNA was achieved. Biotechnol. Bioeng. 2010. 105: 761,769. © 2009 Wiley Periodicals, Inc. [source] | ||||||||||||||||