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Reconstruction Techniques (reconstruction + techniques)
Selected AbstractsEffects of variability in anatomical reconstruction techniques on models of synaptic integration by dendrites: a comparison of three internet archivesEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 5 2004Tibor Szilágyi Abstract The first step in building a realistic computational neuron model is to produce a passive electrical skeleton on to which active conductances can be grafted. For this, anatomically accurate morphological reconstructions of the desired cell type are required. In this study compartmental models were used to compare from a functional perspective three on-line archives of rat hippocampal CA1 pyramidal cell morphologies. The topological organization of cells was found to be similar for all archives, but several morphometric differences were observed. The three-dimensional size of the cells, the diameter and tortuosity of dendrites, and the electrotonic length of the main apical dendrite and of the branches in stratum lacunosum moleculare were dissimilar. The experimentally measured kinetics of somatically recorded inhibitory postsynaptic currents evoked in the stratum lacunosum moleculare (data from the literature) could be reproduced only using the archives that contained cells with an electrotonically short main apical dendrite. In the amplitude attenuation of the simulated postsynaptic currents and the voltage escape from the command potential under voltage clamp conditions, a two- to three-fold difference was observed among archives. Upon activation of a single model synapse on distal branches, cells with low dendritic diameter showed a voltage escape larger than 15 mV. The diameter of the dendrites influenced greatly the results, emphasizing the importance of methods that allow an accurate measurement of this parameter. Our results indicate that there are functionally significant differences in the morphometric data available in different archives even if the cell type, brain region and species are the same. [source] Maximum-likelihood estimation of haplotype frequencies in nuclear familiesGENETIC EPIDEMIOLOGY, Issue 1 2004Tim Becker Abstract The importance of haplotype analysis in the context of association fine mapping of disease genes has grown steadily over the last years. Since experimental methods to determine haplotypes on a large scale are not available, phase has to be inferred statistically. For individual genotype data, several reconstruction techniques and many implementations of the expectation-maximization (EM) algorithm for haplotype frequency estimation exist. Recent research work has shown that incorporating available genotype information of related individuals largely increases the precision of haplotype frequency estimates. We, therefore, implemented a highly flexible program written in C, called FAMHAP, which calculates maximum likelihood estimates (MLEs) of haplotype frequencies from general nuclear families with an arbitrary number of children via the EM-algorithm for up to 20 SNPs. For more loci, we have implemented a locus-iterative mode of the EM-algorithm, which gives reliable approximations of the MLEs for up to 63 SNP loci, or less when multi-allelic markers are incorporated into the analysis. Missing genotypes can be handled as well. The program is able to distinguish cases (haplotypes transmitted to the first affected child of a family) from pseudo-controls (non-transmitted haplotypes with respect to the child). We tested the performance of FAMHAP and the accuracy of the obtained haplotype frequencies on a variety of simulated data sets. The implementation proved to work well when many markers were considered and no significant differences between the estimates obtained with the usual EM-algorithm and those obtained in its locus-iterative mode were observed. We conclude from the simulations that the accuracy of haplotype frequency estimation and reconstruction in nuclear families is very reliable in general and robust against missing genotypes. © 2004 Wiley-Liss, Inc. [source] Multi-material incompressible flow simulation using the moment-of-fluid method,INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS, Issue 8 2010Samuel P. Schofield Abstract This paper compares the numerical performance of the moment-of-fluid (MOF) interface reconstruction technique with Youngs, LVIRA, power diagram (PD), and Swartz interface reconstruction techniques in the context of a volume-of-fluid (VOF) based finite element projection method for the numerical simulation of variable-density incompressible viscous flows. In pure advection tests with multiple materials MOF shows dramatic improvements in accuracy compared with the other methods. In incompressible flows where density differences determine the flow evolution, all the methods perform similarly for two material flows on structured grids. On unstructured grids, the second-order MOF, LVIRA, and Swartz methods perform similarly and show improvement over the first-order Youngs' and PD methods. For flow simulations with more than two materials, MOF shows increased accuracy in interface positions on coarse meshes. In most cases, the convergence and accuracy of the computed flow solution was not strongly affected by interface reconstruction method. Published in 2009 by John Wiley & Sons, Ltd. [source] Interface reconstruction with least-square fit and split Eulerian,Lagrangian advectionINTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS, Issue 3 2003Ruben Scardovelli Abstract Two new volume-of-fluid (VOF) reconstruction algorithms, which are based on a least-square fit technique, are presented. Their performance is tested for several standard shapes and is compared to a few other VOF/PLIC reconstruction techniques, showing in general a better convergence rate. The geometric nature of Lagrangian and Eulerian split advection algorithms is investigated in detail and a new mixed split Eulerian implicit,Lagrangian explicit (EI,LE) scheme is presented. This method conserves the mass to machine error, performs better than split Eulerian and Lagrangian algorithms, and it is only slightly worse than unsplit schemes. However, the combination of the interface reconstruction with the least-square fit and its advection with the EI,LE scheme appears superior to other existing approaches. Copyright © 2003 John Wiley & Sons, Ltd. [source] Biomechanical effects of medial,lateral tibial tunnel placement in posterior cruciate ligament reconstructionJOURNAL OF ORTHOPAEDIC RESEARCH, Issue 1 2003Keith L. Markolf With most posterior cruciate (PCL) reconstruction techniques, the distal end of the graft is fixed within a tibial bone tunnel. Although a surgical goal is to locate this tunnel at the center of the PCL's tibial footprint, errors in medial,lateral tunnel placement of the tibial drill guide are possible because the position of the tip of the guide relative to the PCL's tibial footprint can be difficult to visualize from the standard arthroscopy portals. This study was designed to measure changes in knee laxity and graft forces resulting from mal-position of the tibial tunnel medial and lateral to the center of the PCL's tibial insertion. Bone,patellar tendon,bone allografts were inserted into three separate tibial tunnels drilled into each of 10 fresh-frozen knee specimens. Drilling the tibial tunnel 5 mm medial or lateral to the center of the PCL's tibial footprint had no significant effect on knee laxities: the graft pretension necessary to restore normal laxity at 90° of knee flexion (laxity match pretension) with the medial tunnel was 13.8 N (29%) greater than with the central tunnel. During passive knee flexion,extension, graft forces with the medial tibial tunnel were significantly higher than those with the central tunnel for flexion angles greater than 65° while graft forces with the central tibial tunnel were not significantly different than those with the lateral tibial tunnel. Graft forces with medial and lateral tunnels were not significantly different from those with a central tunnel for 100 N applied posterior tibial force, 5 N m applied varus and valgus moment, and 5 N m applied internal and external tibial torque. With the exception of slightly higher graft forces recorded with the medial tunnel beyond 65° of passive knee flexion, errors in medial,lateral placement of the tibial tunnel would not appear to have important effects on the biomechanical characteristics of the reconstructed knee. © 2002 Orthopaedic Research Society. Published by Elsevier Science Ltd. All rights reserved. [source] Magnitude image CSPAMM reconstruction (MICSR)MAGNETIC RESONANCE IN MEDICINE, Issue 2 2003Moriel NessAiver Abstract Image reconstruction of tagged cardiac MR images using complementary spatial modulation of magnetization (CSPAMM) requires the subtraction of two complex datasets to remove the untagged signal. Although the resultant images typically have sharper and more persistent tags than images formed without complementary tagging pulses, handling the complex data is problematic and tag contrast still degrades significantly during diastole. This article presents a magnitude image CSPAMM reconstruction (MICSR) method that is simple to implement and produces images with improved contrast and tag persistence. The MICSR method uses only magnitude images , i.e., no complex data , but yields tags with zero mean, sinusoidal profiles. A trinary display of MICSR images emphasizes their long tag persistence and demonstrates a novel way to visualize myocardial deformation. MICSR contrast and contrast-to-noise ratios (CNR) were evaluated using simulations, a phantom, and two normal volunteers. Tag contrast 1000 msec after the R wave trigger was 3.0 times better with MICSR than with traditional CSPAMM reconstruction techniques, while CNRs were 2.0 times better. Magn Reson Med 50:331,342, 2003. © 2003 Wiley-Liss, Inc. [source] Nerve regeneration through a healthy peripheral nerve trunk as a nerve conduit: A preliminary study of a new concept in peripheral nerve surgeryMICROSURGERY, Issue 4 2002Fuat Yüksel M.D. The popularity of nerve conduits has increased recently due to the need for alternative nerve reconstruction techniques, obviating the harvest of nerve grafts. Based on ideas suggesting nerve tissue itself, which was the most physiologic environment for nerve regeneration, a study using 40 sciatic nerves of 20 rats was performed. The proximal stumps of transected peroneal nerves were sutured to the lateral wall of healthy tibial nerve trunks after removal of the epineurium. Twelve weeks later, tissue samples were taken from the anastomosis sites and from the levels above and below these sites. Configurations of fascicles were evaluated, and numbers of fibers were estimated. It was observed that the fibers of peroneal nerves regenerated into and through the tibial nerve trunk distally. This suggested that active regenerating fibers of a proximal stump of a nerve could regenerate and progress as a fascicular unit in optimum condition at the trunk of another healthy nerve. This preliminary study should stimulate further studies based on this new concept: that a nerve trunk can serve as the host for the regenerating fibers of another nerve. © 2002 Wiley-Liss, Inc. MICROSURGERY 22:138,143 2002 [source] SPECT and Alzheimer's DiseasePSYCHOGERIATRICS, Issue 2 2002Siobhan Ni Bhriain Abstract: This article is review of the role of single photon emission tomography (SPECT) in the diagnosis and management of Alzheimer's disease (AD). It begins by describing AD in terms of diagnosis, pathology and current pharmacological treatment. The relevance of the pathological changes in relation to SPECT is outlined. This is discussed in terms of receptor abnormalities and atrophic changes which in turn effect cerebral blood flow. A detailed description of SPECT methodology describes how the quality of the image is effected by SPECT instrumentation, image reconstruction techniques and a number of subject factors. The article goes on to discuss the role SPECT in the diagnosis of AD and its potential for facilitating early diagnosis. The main focus here is on the changes which occur in cerebral blood flow in AD and the sensitivity and specificity of regional changes in cerebral blood flow is described. Image analysis is an area in which there has been many developments in the last number of years and the authors describe the differences between qualitative and quantitative image analysis, with a particular focus on statistical parametric mapping (SPM). There is a brief discussion concerning receptor ligands and their potential use in the diagnosis and management of AD, although this remains an undeveloped area in SPECT imaging as yet. Finally, the authors discuss the future possibilities for SPECT and AD, and conclude that there is considerable potential for SPECT in the diagnosis and management of AD with further refinement of image analysis techniques and the development of cholinergic receptor ligands. [source] Analysis of Cardiac Development in the Turtle Emys orbicularis (Testudines: Emidydae) using 3-D Computer Modeling from Histological SectionsTHE ANATOMICAL RECORD : ADVANCES IN INTEGRATIVE ANATOMY AND EVOLUTIONARY BIOLOGY, Issue 7 2010Laura M.F. Bertens Abstract In this article we present a 3-D modeling study of cardiac development in the European pond turtle, Emys orbicularis (of the reptilian order Testudines). The study is aimed at elucidating the embryonic development of the horizontal septum in the ventricle and underscoring the importance of 3-D reconstructions in studying morphogenesis. Turtles possess one common ventricle, partly divided into three cava by a vertical and a horizontal septum, of which the embryonic origins have so far not been described. We used serial sectioning and computerized high-resolution 3-D reconstructions of different developmental stages to create a chronological overview of cardiogenesis, in order to study this process. This has yielded a new understanding of the development of the horizontal septum and (directly related) the looping of the heart tube. This looping is found to be markedly different from that in the human heart, with the turtle having two clear bends in the part of the heart tube leaving the primitive ventricle, as opposed to one in humans. It is this particular looping that is reponsible for the formation of the horizontal septum. In addition to our findings on the ventricular septation this study has also yielded new insights into the developmental origins of the pulmonary vein. The 3-D reconstructions were built using our platform TDR-3-D base and enabled us to study the developmental processes in specific parts of the turtle heart separately and in three dimensions, over time. The complete 3-D reconstructions have been made available to the reader via internet using our 3-D model browser application, which allows interactive viewing of the models. The browser application can be found on bio-imaging.liacs.nl/galleries/emysorbicularis/TurtleGallery.html, along with additional images of both models and histological sections and animation sequences of the models. By allowing the reader to view the material in such an interactive way, we hope to make optimal use of the new 3-D reconstruction techniques and to engage the reader in a more direct manner. Anat Rec 239:1101,1114, 2010. © 2010 Wiley-Liss, Inc. [source] HS09 REPLANTATION SURGERY , THE RECONSTRUCTIVE APPROACHANZ JOURNAL OF SURGERY, Issue 2007L. C. Teoh The function of the replanted parts can be improved if attention to reconstruction techniques is carried out. These reconstructive techniques are: 1) adequate debridement and shortening, 2) stable skeletal fixation, 3) strengthened tendon repairs, 4) quality nerve repair, 5) extensive vascular anastomosis, 6) complete skin coverable, and 7) Early intensive active rehabilitation. 1) The debridement should be generous and the shortening judicious. More than 50% of the skin should be in direct contact, and direct anastomosis of some of vessels should be possible. 2) The skeletal stabilization should be of good very quality that will allow free mobilization of the joints. 3) The repair of the tendons should take advantage of the excess length for a strengthen repair. Some degree of active mobilization should be make possible. 4) Primary nerve grafting or nerve transfer should be considered if there is loss of nerve length. 5) Vascular repair should be on the basis of as many as possible the number of arteries and veins that can be found for anastomosis. 6) Any residual skin defect should be planned for a proper resurfacing within the next 5 to 10 days. 7) Early intensive active rehabilitation should be prescribed. Gradual active ROM for tendon gliding should be instituted with in the first week. The function of the replanted digit and hand has continued to improve with the reconstructive approach. With further experience the reconstructive approach can be done in all cases with confidence. [source] Fast computation of 2D transfer functions from adaptive optics dataASTRONOMISCHE NACHRICHTEN, Issue 6 2010F. Wöger Abstract The use of atmospheric transfer functions is common in image reconstruction techniques such as speckle interferometry to calibrate the Fourier amplitudes of the reconstructed images. Thus, an accurate model is needed to ensure proper photometry in the reconstruction. The situation complicates when adaptive optics (AO) are used during data acquisition. I propose a novel technique to derive two-dimensional transfer functions from data collected using AO simultaneously with the observations. The technique is capable to compute the relevant transfer functions within a short time for the prevailing atmospheric conditions and AO performance during data acquisition (© 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Oesophageal and gastric bile exposure after gastroduodenal surgery with Henley's interposition or a Roux-en-Y loopBRITISH JOURNAL OF SURGERY (NOW INCLUDES EUROPEAN JOURNAL OF SURGERY), Issue 5 2004J.-Y. Mabrut Background: The degree which the various reconstruction techniques prevent bile reflux after gastroduodenal surgery has been poorly studied. Methods: Bile exposure in the intestinal tract just proximal to the jejunal loop was measured with the Bilitec 2000® device for 24 h after gastroduodenal surgery in three groups of patients. Group 1 comprised 24 patients with a 60-cm Henley's loop after total gastrectomy. Group 2 included 31 patients with a 60-cm Roux-en- loop after total (22 patients) or subtotal (nine) gastrectomy. Group 3 contained 21 patients with a 60-cm Roux-en- loop anastomosed to the proximal duodenum as part of a duodenal switch operation for pathological transpyloric duodenogastric reflux. Bile exposure, measured as the percentage time with bile absorbance greater than 0·25, was classified as nil, within the range of a control population of healthy subjects, or pathological (above the 95th percentile for the control population). Reflux symptoms were scored and all patients had upper gastrointestinal endoscopy. Results: Bile was detected in the intestine proximal to the loop in none of 24 patients in group 1, eight of 31 in group 2 and 12 of 21 in group 3 (P < 0·001). The mean reflux symptom score increased with the degree of bile exposure, and the proportion of patients with oesophagitis or gastritis correlated well with the extent of bile exposure (P < 0·001). Conclusion: A long Henley's loop was more effective in preventing bile reflux than a long Roux-en- loop. Bilitec® data correlated well with the severity of reflux symptoms and the presence of mucosal lesions. Copyright © 2004 British Journal of Surgery Society Ltd. Published by John Wiley & Sons, Ltd. [source] | |||||||||||||