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Reaction Field (reaction + field)
Kinds of Reaction Field Selected AbstractsMorphosynthesis of Nanostructured Gold Crystals by Utilizing Interstices in Periodically Arranged Silica Nanoparticles as a Flexible Reaction Field,ANGEWANDTE CHEMIE, Issue 39 2010Yoshiyuki Kuroda Starr und doch flexibel: Gold-Nanoplättchen mit geordneten Oberflächengrübchen (siehe Bild) werden in den Zwischenräumen periodisch angeordneter SiO2 -Nanopartikel abgeschieden. Die SiO2 -Nanopartikel wirken nicht nur als starre Template für die Grübchen- oder Mesoporenbildung, sondern bieten auch eine flexible Reaktionsumgebung, die das anisotrope Kristallwachstum von Gold in einem simultan gebildeten zweidimensionalen Nanoraum ermöglicht. [source] Azide,Tetrazole Ring-Chain Isomerism in Polyazido-1,3,5-triazines, Triazido- s -heptazine, and DiazidotetrazinesEUROPEAN JOURNAL OF INORGANIC CHEMISTRY, Issue 11 2006Anton Hammerl Abstract The azide,tetrazole isomerism in several polyazido-1,3,5-triazines, triazido- sym -heptazine, and some diazido-1,2,4,5-tetrazines was investigated by ab initio quantum chemical methods in order to determine whether the polyazides are suitable starting materials for the synthesis of the isomeric tetrazoles. The effects of solvation in CCl4, DMSO and water on this isomerism were included using the self consistent reaction field (SCRF) method. The effect of amino- and nitrosubstituents on the azide,tetrazole isomerism was also examined. In the gas phase all investigated polyazidoheterocycles do not cyclize to form tetrazoles. An electron-donating amino group favors the ring closure to tetrazoles, whereas an electron-withdrawing nitro group favors the azides. Solvation in polar solvents favors the formation of a tetrazole ring system due to higher charge separation in the tetrazole ring system, but for all polyazido-1,3,5-triazines, including triazido- s -heptazine, the effects of solvation are not strong enough to shift the equilibrium to the tetrazole side, which explains why several attempts to detect these compounds have failed. The monotetetrazoles of diazidotetrazine and bis(azido)azo-1,2,4,5-tetrazine and the ditetrazole of bis(azido)hydrazo-1,2,4,5-tetrazine are the minimum energy species in DMSO and water. Thus we predict that the diazidoazo- and hydrazotetrazines will readily cyclize to the tetrazoles in polar solvents. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2006) [source] Extended Hartree,Fock theory of chemical reactions.INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, Issue 15 2009Abstract Symmetry and broken symmetry (BS) in molecular orbital description of transition structures and intermediates in oxygenation reactions have been revisited to elucidate states correlation diagrams and mechanisms for addition reactions of molecular oxygen and metal-oxo MO (M = Mn(II) and Fe(II)) species to CC double bonds. Relative stabilities between diradical (DR) and perepoxide (PE) intermediates were thoroughly investigated by several BS hybrid DFT (HDFT) methods and BS CCSD(T) method with and without spin projection. It has been found that recovery of spin symmetry, namely eliminating spin contamination error from the BS solutions, is crucial for the elucidation of reasonable state correlation diagrams and energy differences of the key structures in the oxygenation reactions because the singlet-triplet energy gap for molecular oxygen is large (22 kcal/mol). The BS HDFT followed by spin correction reproduced activation barriers for transition structures along both PE and DR reaction pathways by the use of the CASPT2 method. Basis set dependence on the relative stability between PE and DR intermediates were also examined thoroughly. Solvation effect for DR and PE intermediates was further examined with self-consistent reaction field (SCRF) and SCIPCM methods. Both BS HDFT and CASPT2 have concluded that the DR mechanism is favorable for the addition reaction of singlet oxygen to ethylene, supporting our previous conclusions. The BS HDFT with spin correction was concluded to be useful enough for theoretical investigations of mechanisms of oxygenation reactions. Implications of the computational results were discussed in relation to the theoretical framework (four configuration model) for elucidation of possible mechanisms of epoxidation reactions with Fe(IV)O cores in metalloenzymes on the basis of isolobal analogies among O, OO, and Fe(IV)O. Correspondence between magnetic coupling mode and radical pathway in oxygenations with these species was clarified based on the BS MO interaction diagrams, leading to local singlet and triplet diradical mechanisms for epoxidations. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009 [source] Quantum chemical studies on molecular structural conformations and hydrated forms of salicylamide and O-hydroxybenzoyl cyanideINTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, Issue 3 2005K. Anandan Abstract Ab initio and density functional theory (DFT) methods have been employed to study the molecular structural conformations and hydrated forms of both salicylamide (SAM) and O-hydroxybenzoyl cyanide (OHBC). Molecular geometries and energetics have been obtained in the gaseous phase by employing the Møller,Plesset type 2 MP2/6-311G(2d,2p) and B3LYP/6-311G(2d,2p) levels of theory. The presence of an electron-releasing group (SAM) leads to an increase in the energy of the molecular system, while the presence of an electron-withdrawing group (OHBC) drastically decreases the energy. Chemical reactivity parameters (, and ,) have been calculated using the energy values of the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) obtained at the Hartree,Fock (HF)/6-311G(2d,2p) level of theory for all the conformers and the principle of maximum hardness (MHP) has been tested. The condensed Fukui functions have been calculated using the atomic charges obtained through the natural bond orbital (NBO) analysis scheme for all the optimized structures at the B3LYP/6-311G(2d,2p) level of theory, and the most reactive sites of the molecules have been identified. Nuclear magnetic resonance (NMR) studies have been carried out at the B3LYP/6-311G(2d,2p) level of theory for all the conformers in the gaseous phase on the basis of the method of Cheeseman and coworkers. The calculated chemical shift values have been used to discuss the delocalization activity of the electron clouds. The dimeric structures of the most stable conformers of both SAM and OHBC in the gaseous phase have been optimized at the B3LYP/6-311G(2d,2p) level of theory, and the interaction energies have been calculated. The most stable conformers of both compounds bear an intramolecular hydrogen bond, which gives rise to the formation of a pseudo-aromatic ring. These conformers have been allowed to interact with the water molecule. Special emphasis has been given to analysis of the intermolecular hydrogen bonds of the hydrated conformers. Self-consistent reaction field (SCRF) theory has been employed to optimize all the conformers in the aqueous phase (, = 78.39) at the B3LYP/6-311G(2d,2p) level of theory, and the solvent effect has been studied. Vibrational frequency analysis has been performed for all the optimized structures at MP2/6-311G(2d,2p) level of theory, and the stationary points corresponding to local minima without imaginary frequencies have been obtained for all the molecular structures. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005 [source] Refractive index and third-order nonlinear susceptibility of C60 in the condensed phase calculated with the discrete solvent reaction field modelINTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, Issue 5 2005L. Jensen Abstract We have calculated the frequency-dependent refractive index and the third-order nonlinear susceptibility for C60 in the condensed phase, which is related to third-harmonic generation (THG) and degenerate four-wave mixing (DFWM) experiments. This was done using the recently developed discrete solvent reaction field (DRF) model, which combines a time-dependent density functional theory (TD-DFT) description of the central C60 molecule with a classical polarizable MM model for the rest of the fullerene cluster. Using this model, effective microscopic properties can be calculated that, combined with calculated local field factors, give macroscopic susceptibilities. The largest calculation was for a cluster of 63 C60 molecules in which the central molecule was treated with TD-DFT. For this molecule, the effective polarizability was increased with about 15% and the effective second hyperpolarizability with about 60% compared with the gas phase. The calculated refractive index was found to be in good agreement with experiments and other theoretical results. The agreement with THG experiments was within a factor of two, whereas for DFWM the agreement was less good due to the neglect of vibrational contributions in the calculations. It was found that it is more important to account for the dispersion in the third-order susceptibilities than in the corresponding second hyperpolarizability. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005 [source] Comparison of implicit solvent models for the simulation of protein,surface interactionsJOURNAL OF COMPUTATIONAL CHEMISTRY, Issue 16 2006Yu Sun Abstract Empirical force field-based molecular simulations can provide valuable atomistic-level insights into protein,surface interactions in aqueous solution. While the implicit treatment of solvation effects is desired as a means of improving simulation efficiency, existing implicit solvent models were primarily developed for the simulation of peptide or protein behavior in solution alone, and thus may not be appropriate for protein interactions with synthetic material surfaces. The objective of this research was to calculate the change in free energy as a function of surface,separation distance for peptide,surface interactions using different empirical force field-based implicit solvation models (ACE, ASP, EEF1, and RDIE with the CHARMM 19 force field), and to compare these results with the same calculations conducted using density functional theory (DFT) combined with the self-consistent reaction field (SCRF) implicit solvation model. These comparisons show that distinctly different types of behavior are predicted with each implicit solvation method, with ACE providing the best overall agreement with DFT/SCRF calculations. These results also identify areas where ACE is in need of improvement for this application and provide a basis for subsequent parameter refinement. © 2006 Wiley Periodicals, Inc. J Comput Chem, 2006 [source] Dispersion and repulsion contributions to the solvation free energy: Comparison of quantum mechanical and classical approaches in the polarizable continuum modelJOURNAL OF COMPUTATIONAL CHEMISTRY, Issue 15 2006Carles Curutchet Abstract We report a systematic comparison of the dispersion and repulsion contributions to the free energy of solvation determined using quantum mechanical self-consistent reaction field (QM-SCRF) and classical methods. In particular, QM-SCRF computations have been performed using the dispersion and repulsion expressions developed in the framework of the integral equation formalism of the polarizable continuum model, whereas classical methods involve both empirical pairwise potential and surface-dependent approaches. Calculations have been performed for a series of aliphatic and aromatic compounds containing prototypical functional groups in four solvents: water, octanol, chloroform, and carbon tetrachloride. The analysis is focused on the dependence of the dispersion and repulsion components on the level of theory used in QM-SCRF computations, the contribution of those terms in different solvents, and the magnitude of the coupling between electrostatic and dispersion,repulsion components. Finally, comparison is made between the dispersion,repulsion contributions obtained from QM-SCRF calculations and the results determined from classical approaches. © 2006 Wiley Periodicals, Inc. J Comput Chem, 2006 [source] An ab initio theoretical study of electronic structure and properties of 2,-deoxyguanosine in gas phase and aqueous mediaJOURNAL OF COMPUTATIONAL CHEMISTRY, Issue 5 2002S. K. Mishra Abstract Molecular geometries of two structural forms of 2,-deoxyguanosine (keto-N9R and keto-N7R, R = the sugar moiety) considering both the C2,-endo and C3,-endo conformations of the sugar ring and those of the complexes of these species with two water molecules each were optimized employing the ab initio RHF procedure. A mixed basis set consisting of the 6-311+G* basis set for the nitrogen atom of the amino group and the 4-31G basis set for all the other atoms was used. The RHF calculations were followed by correlation correction of the total energy at the MP2 level. Both the structural forms of 2,-deoxyguanosine were solvated using the polarized continuum model (PCM) of the self-consistent reaction field (SCRF) theory and the corresponding RHF optimized geometries at the RHF and MP2 levels. Geometry optimization was also performed in aqueous media using the Onsager model at the RHF level using the above-mentioned mixed basis set, and subsequently, using the reoptimized geometries, single-point MP2 calculations were performed. It is found that both the keto-N9R and keto-N7R forms of 2,-deoxyguanosine as well as their complexes with two water molecules each would occur, particularly at the water,air interface. Though the normal Watson,Crick-type base pairing would not be possible with the keto-N7R form of 2,-deoxyguanosine(G*), two other (G*-C and G*-T) base pairing schemes may occur with this form of the nucleoside, which may cause mutation. The present calculated geometry of the keto-N9R form of the anti -conformation of 2,-deoxyguanosine including the dihedral angle ,CN agree satisfactorily with the available crystallographic results. The present results also agree satisfactorily with those obtained by other authors earlier for the keto-N9R form of 2,-deoxyguanosine using B3LYP and MP2 methods employing the 6-31G* basis set. Using transition state calculations, it is shown that tautomerism of guanine and other similar molecules where the tautomers would coexist would be facilitated by the occurrence of the H+ and OH, fragments of water molecules. Further, this coexistence of the two tautomers appears to make the C8 carbon atom located between the N7 and N9 nitrogen atoms susceptible to attack by the OH, group. Thus, an explanation is obtained for the efficient formation of the reaction product 8-hydroxy-2,-deoxyguanosine, which serves as a biomarker for oxidative damage to DNA in biological systems. © 2002 Wiley Periodicals, Inc. J Comput Chem 23: 530,540, 2002; DOI 10.1002/jcc.10046 [source] Modulation of the Aerobic Oxidative Polymerization in Phenylazomethine Dendrimers Assembling Copper ComplexesCHEMISTRY - A EUROPEAN JOURNAL, Issue 36 2010Dr. Takane Imaoka Abstract The aerobic oxidative polymerization of phenol derivatives can provide poly(phenylene oxide)s, which are known as engineering plastics. This oxidation can be carried out with atmospheric oxygen molecules as the oxidizing reagent in the presence of copper complexes as the catalyst; however, stoichiometric or excess amounts of bases are also generally required. By using a phenylazomethine dendrimer complexed with several equivalent amounts of copper chloride, the additive (base)-free polymerization of 2,6-difluorophenol was successful with a very small amount of the catalyst (0.7,mol,% of copper for the monomer) because the dendrimer was composed of many Schiff base units, affording a base and catalyst (copper complex) condensed reaction field. The resulting polymer was nearly linear and the molecular weight was very high. When the equimolar amount of the copper complex in one dendrimer molecule was increased, the polymer obtained under this reaction condition was rather branched, resulting in a higher glass transition temperature. [source] | ||||||||||