Reef Environments (reef + environment)

Distribution by Scientific Domains


Selected Abstracts


Human enteric viruses in groundwater indicate offshore transport of human sewage to coral reefs of the Upper Florida Keys

ENVIRONMENTAL MICROBIOLOGY, Issue 4 2010
J. Carrie Futch
Summary To address the issue of human sewage reaching corals along the main reef of the Florida Keys, samples were collected from surface water, groundwater and coral [surface mucopolysaccharide layers (SML)] along a 10 km transect near Key Largo, FL. Samples were collected semi-annually between July 2003 and September 2005 and processed for faecal indicator bacteria (faecal coliform bacteria, enterococci and Clostridium perfringens) and human-specific enteric viruses (enterovirus RNA and adenovirus DNA) by (RT)-nested polymerase chain reaction. Faecal indicator bacteria concentrations were generally higher nearshore and in the coral SML. Enteric viruses were evenly distributed across the transect stations. Adenoviruses were detected in 37 of 75 samples collected (49.3%) whereas enteroviruses were only found in 8 of 75 samples (10.7%). Both viruses were detected twice as frequently in coral compared with surface water or groundwater. Offshore, viruses were most likely to be found in groundwater, especially during the wet summer season. These data suggest that polluted groundwater may be moving to the outer reef environment in the Florida Keys. [source]


Diversity and expression of nitrogen fixation genes in bacterial symbionts of marine sponges

ENVIRONMENTAL MICROBIOLOGY, Issue 11 2008
Naglaa M. Mohamed
Summary Marine sponges contain complex assemblages of bacterial symbionts, the roles of which remain largely unknown. We identified diverse bacterial nifH genes within sponges and found that nifH genes are expressed in sponges. This is the first demonstration of the expression of any protein-coding bacterial gene within a sponge. Two sponges Ircinia strobilina and Mycale laxissima were collected from Key Largo, Florida and had ,15N values of c. 0,1, and 3,4, respectively. The potential for nitrogen fixation by symbionts was assessed by amplification of nifH genes. Diverse nifH genes affiliated with Proteobacteria and Cyanobacteria were detected, and expression of nifH genes affiliated with those from cyanobacteria was detected. The nifH genes from surrounding seawater were similar to those of Trichodesmium and clearly different from the cyanobacterial nifH genes detected in the two sponges. This study advances understanding of the role of bacterial symbionts in sponges and suggests that provision of fixed nitrogen is a means whereby symbionts benefit sponges in nutrient-limited reef environments. Nitrogen fixation by sponge symbionts is possibly an important source of new nitrogen to the reef environment that heretofore has been neglected and warrants further investigation. [source]


New arthrodires (Family Williamsaspididae) from Wee Jasper, New South Wales (Early Devonian), with comments on placoderm morphology and palaeoecology

ACTA ZOOLOGICA, Issue 2009
Gavin C. Young
Abstract Two new arthrodire species represented by articulated trunk armours from the Early Devonian (Emsian) limestones of the Burrinjuck area are placed in a new genus Elvaspis (E. tuberculata, E. whitei), assigned to the Family Williamsaspididae. On new evidence of the dermal neck-joint and shape of the median dorsal plate this family is reassigned from the Phlyctaeniina to the Brachythoraci. The strongly ornamented post-branchial lamina of the trunk armour relates to a recent hypothesis that special post-branchial denticles in placoderms are homologous to pharyngeal denticles of crown-gnathostomes rather than modified external tubercles. Variable development of the post-branchial lamina and its ornament in different placoderm subgroups, with specific resemblance to the external ornament characteristic of that subgroup, indicates that modification of normal external dermal ornament is the most parsimonious interpretation. A comparison of fish diversity in modern and ancient tropical reef environments is consistent with an equilibrium model for species diversification through time. [source]


Diversity and expression of nitrogen fixation genes in bacterial symbionts of marine sponges

ENVIRONMENTAL MICROBIOLOGY, Issue 11 2008
Naglaa M. Mohamed
Summary Marine sponges contain complex assemblages of bacterial symbionts, the roles of which remain largely unknown. We identified diverse bacterial nifH genes within sponges and found that nifH genes are expressed in sponges. This is the first demonstration of the expression of any protein-coding bacterial gene within a sponge. Two sponges Ircinia strobilina and Mycale laxissima were collected from Key Largo, Florida and had ,15N values of c. 0,1, and 3,4, respectively. The potential for nitrogen fixation by symbionts was assessed by amplification of nifH genes. Diverse nifH genes affiliated with Proteobacteria and Cyanobacteria were detected, and expression of nifH genes affiliated with those from cyanobacteria was detected. The nifH genes from surrounding seawater were similar to those of Trichodesmium and clearly different from the cyanobacterial nifH genes detected in the two sponges. This study advances understanding of the role of bacterial symbionts in sponges and suggests that provision of fixed nitrogen is a means whereby symbionts benefit sponges in nutrient-limited reef environments. Nitrogen fixation by sponge symbionts is possibly an important source of new nitrogen to the reef environment that heretofore has been neglected and warrants further investigation. [source]


Diversity and functional importance of coral-feeding fishes on tropical coral reefs

FISH AND FISHERIES, Issue 3 2008
Andrew J. Cole
Abstract Fishes that feed from live corals (corallivores) are a conspicuous component of healthy coral reef environments. However, knowledge of the occurrence and ecological significance of this feeding mode is fragmentary. Historically, very few fish were considered capable of feeding from live coral, and those few that did were considered ecologically insignificant. More recently, the role of corallivores has been re-evaluated; published records document 128 corallivorous fish species from 11 different families, with 69 of these belonging to the family Chaetodontidae. Other families, including the Labridae, Tetraodontidae, Balistidae, Monacanthidae, Pomacentridae and Scaridae, all have between seven and ten coral-feeding species. One-third of coral-feeding fishes feed almost exclusively on corals, with more than 80% of their diet based on coral. Corallivorous fish show distinct prey preferences and consume only a small subset of available corals, usually the genera Acropora, Pocillopora and Porites. This selective predation by corallivores can limit abundance and distribution of preferred corals. Chronic predation by corallivores may also exacerbate effects of coral disturbance (e.g. climate-induced coral bleaching), impeding reef recovery and causing further coral loss. Conversely, the cover of preferred corals can be a primary determinant of corallivore abundance and physiological condition. Owing to this close association, obligate corallivores invariably decline in response to loss of coral cover. Increased knowledge of the number of corallivores and their diets suggest that this feeding mode is more important to coral reef food webs than traditionally thought. [source]


Influence of selected factors on the dietary compositions of three targeted and co-occurring temperate species of reef fishes: implications for food partitioning

JOURNAL OF FISH BIOLOGY, Issue 6 2010
M. E. Platell
The dietary compositions of three medium to large targeted fish species, which co-occur over reefs in temperate waters of south-western Australia, were determined. These data were then used to ascertain statistically the extent to which body size, season and habitat influence the diets of these species and the degree to which food resources were partitioned among and within those species, and thus reduced the potential of interspecific and intraspecific competition. On the west coast, Bodianus frenchii (Labridae) and Epinephelides armatus (Serranidae) spent their whole life over prominent limestone reefs, as did Glaucosoma hebraicum (Glaucosomatidae) in all but juvenile life, when it lived over low-relief, limestone substrata. The dietary composition of each species changed with increasing body size, which, in G. hebraicum, was particularly pronounced at c. 300 mm total length (LT) and therefore at the size when this species shifts habitat. When the three species co-occurred over the same reefs, their dietary compositions were significantly different, with that of B. frenchii being by far the most discrete, reflecting a far greater contribution by sedentary taxa. Thus, the diet of B. frenchii was distinguished from those of the other two species in containing substantial volumes of bivalve and gastropod molluscs and echinoid echinoderms and essentially no teleosts. Although the diets of G. hebraicum and particularly E. armatus were dominated by teleosts, and especially for larger individuals, the former species ingested greater volumes of cephalopods and small crustaceans. The pointed jaws of B. frenchii, with their forwardly directed and interlocking anterior incisors, are ideally adapted for biting and retaining their invertebrate prey, which are attached to or reside within reef crevices. In contrast, the mouths of G. hebraicum and E. armatus are broader and rounder and contain numerous small, slender and inward-pointing teeth. These teeth, in conjunction with prominent backward-curved canines in E. armatus, facilitate the capture and retention of fish prey. Observations in situ indicate that G. hebraicum is a suction feeder, while E. armatus is predominantly a ram feeder. Although reef environments on the west and south coasts differ, the diet of B. frenchii on these coasts differed only slightly. Interspecific differences in diet, combined with size-related changes in dietary compositions and the occupation of different habitats by juvenile and adult G. hebraicum, reduce the potential for competition for food resources among and within B. frenchii, G. hebraicum and E. armatus and thus helps facilitate the coexistence of these species which historically have been abundant over reefs in south-western Australia. [source]


Optimization of DNA Extraction from a Scleractinian Coral for the Detection of Thymine Dimers by Immunoassay,

PHOTOCHEMISTRY & PHOTOBIOLOGY, Issue 4 2007
Anastazia T. Banaszak
ABSTRACT Ultraviolet (UV)-B is known to cause DNA damage, principally by the formation of thymine dimers, but little research has been conducted in coral reef environments where UV doses are high. The majority of tropical reef-dwelling corals form a mutualistic symbiosis with the dinoflagellate Symbiodinium but few studies have been conducted on in situ DNA damage in corals and none have investigated the symbiotic components separately. The aim of this research was to quantify DNA damage in both the coral host and the dinoflagellate symbiont. The first step in this investigation was to optimize the extraction of DNA from the host, Porites astreoides, as well as the symbiont. The optimization was divided into a series of steps: the preservation of the samples, separation of the coral tissue from the skeleton, separation of the host tissue from the algal cells to prevent cross contamination as well as the extraction and purification of genomic DNA from the algae that are located intracellularly within the invertebrate animal tissue. The best preservation method was freezing at low temperatures without ethanol. After scraping with a razor blade, the coral tissue can be divided into host and algal components and the DNA extracted using modifications of published techniques yielding DNA suitable for the quantification of thymine dimer formation using antibodies. Preliminary data suggest that in P. astreoides collected from 1 m depth, thymine dimers form approximately 2.8 times more frequently in the host DNA than in the DNA of its symbionts. [source]


Maerl growth, carbonate production rates and accumulation rates in the ne atlantic

AQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue S1 2003
Dan Bosence
Abstract 1.Accumulations of maerl occur widely in ocean facing coastal waters (<20,30 m depth) of the northeast Atlantic, that are sheltered from the direct SW approach of storm waves and have little terrigenous sediment supply. 2.The different methods that have been used to assess the rate of formation of cool temperate, coralline algal gravels (maerl) are outlined. 3.Formation rates of maerl may be expressed as short-term, branch growth rates (mm yr,1), as calcium carbonate production rates (g CaCO3 m,2 yr,1), or as longer-term accumulation rates (m kyr,1=m 1000 yr,1). 4.Branch growth rates of the free living, branching coralline algae that form maerl in northwest Spain and western Ireland vary from 0.1 to 1.0 mm yr,1. Rates from Norway are either 0.05,0.15 or up to 1.0 mm yr,1. 5.Production rates vary from 30,250 g CaCO3 m,2 yr,1 in western Ireland, 876 g CaCO3 m,2 yr,1 in northwest France and 90,143 or 895,1423 g CaCO3 m,2 yr,1 in Norway. 6.Accumulation rates vary from 0.08 m ky,1 in Orkney to 0.5 m ky,1 in Cornwall, to 0.8,1.4 m kyr,1 in Norway. 7.These production and accumulation rates are similar to the lower end of such rates from tropical coral reef environments. This is achieved by high standing crops that compensate for the lower growth rates of the temperate algae. Although rapid on a geological time-scale these accumulation rates are far too low for the maerl to be regarded as a sustainable resource for extraction for agricultural and industrial use. Copyright © 2003 John Wiley & Sons, Ltd. [source]