Home About us Contact
|
Home About us Contact | ||
|
|
||
Putative Species (putative + species)
Selected AbstractsPhysiological and molecular characterization of anaerobic benzene-degrading mixed culturesENVIRONMENTAL MICROBIOLOGY, Issue 2 2003Ania C. Ulrich Summary Nine distinct anaerobic benzene-degrading cultures were enriched from sediment samples from four different sites. These cultures used nitrate, sulphate or CO2 as electron acceptors. The shortest doubling times were observed in nitrate-reducing cultures, although cell yield was lowest in these cultures. The highest substrate concentration utilized and maximum absolute rates of benzene degraded (in µM day,1) were observed in methanogenic cultures. The microbial compositions of a methanogenic and nitrate-reducing culture were determined from a clone library of 16S rRNA genes. Five Bacterial 16S rRNA sequences, one of which resembled a clone previously found in a sulphate-reducing, benzene-degrading culture and four Archaeal 16S rRNA sequences were identified in a methanogenic culture. Four Bacterial and no Archaeal 16S rRNA sequences were identified in a nitrate-reducing culture. The relative abundance of the four nitrate-reducing putative species was determined by slot blot hybridization. Two green sulphur bacteria together formed 52% of the clone library, but were found to be less than 4% of the culture by slot blot analysis. One of the cloned 16S rRNA gene sequences comprised 70% of the culture and was phylogenetically 93% similar to both Azoarcus and Dechloromonas species, which have been shown to degrade aromatic compounds, including benzene, under nitrate-reducing conditions. [source] Assessment of rampant genitalic variation in the spider genus Homalonychus (Araneae, Homalonychidae)INVERTEBRATE BIOLOGY, Issue 2 2009Sarah C. Crews Abstract. Animal genitalia are often complex and thought to vary little within species but differ between closely related species making them useful as primary characters in species diagnosis. Spiders are no exception, with nearly all of the 40,462 (at the time of this writing) described species differentiated by genitalic characteristics. However, in some cases, the genitalia of putative species are not uniform, but rather vary within species. When intraspecific variation overlaps interspecific variation, it can be difficult (if not impossible) to place a name on a specimen. The quantification of shape variation in genitalia has not often been attempted, probably because until recently it was not a methodologically and computationally simple process. In the two currently recognized species of the spider genus Homalonychus, genitalic variation is rampant in both male and female structures, with some parts of the genitalia (e.g., the retrolateral tibial apophysis) differing in each specimen examined. In this study, geometric morphometric analysis employing landmark data is used to quantify both intra- and interspecific variation in this genus. The large amount of variation is condensed into two or three groups depending on the structures examined, and these groups correspond to either the two species or to previously established mitochondrial DNA clades within one of the species. The results also show that analyses of female structures do not separate the groups as readily as the analyses of the male structures. The large amount of variation present in some structures is not correlated with geography or population genetic structure. [source] MOLECULAR PHYLOGENY OF DISCOSPORANGIUM MESARTHROCARPUM (PHAEOPHYCEAE) WITH A REINSTATEMENT OF THE ORDER DISCOSPORANGIALES,JOURNAL OF PHYCOLOGY, Issue 1 2007Hiroshi Kawai A molecular phylogenetic analysis of the little-studied filamentous brown alga Discosporangium mesarthrocarpum (Meneghini) Hauck using rbcL and partial 18S rDNA sequences revealed that the species forms a monophyletic clade with Choristocarpus tenellus (Kütz.) Zanardini that is sister to all other brown algae. Although D. mesarthrocarpum has unique disk-shaped plurilocular reproductive organs, D. mesarthrocarpum and C. tenellus share the following basic morphological features, which are considered to be plesiomorphic characters in the brown algae: (1) apical (and diffuse) growth; (2) uniseriate, subdichotomously branched filaments; (3) multiple chloroplasts per cell without pyrenoids; and (4) lack of heterotrichy and of phaeophycean hairs. The rbcL DNA sequence of an Australian D. mesarthrocarpum specimen showed considerable deviation from Mediterranean and Macaronesian specimens. Therefore, the presence of a second species in the genus is suggested; however, the taxonomic treatment of this putative species is not pursued in the present report. Regarding the higher-ranking systematic position of D. mesarthrocarpum, reinstatement of Discosporangiaceae and Discosporangiales is proposed, and the inclusion of Choristocarpaceae in the order is also suggested. Under short-day and long-day culture conditions at 15°C,25°C, Mediterranean D. mesarthrocarpum exhibited a direct type of life history, with a succession of uniseriate filamentous thalli bearing characteristic disk-shaped plurilocular zoidangia, but thalli did not survive at 10°C and below. [source] The genus Adriohydrobia (Hydrobiidae: Gastropoda): polytypic species or polymorphic populations?JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 4 2001T. Wilke In molluscs, the shell characters have historically played an important role in discrimination among species. However, because of the paucity, variability and degree of homoplasy of shell characters, their sole use for taxonomic and systematic studies is controversial in many groups. In the present paper the genus AdriohydrobiaRadoman, 1973 is used as a paradigm to test relationships of taxa that were considered to be species, mainly on the basis of the shell size variations. We tested whether the genus consists of several sympatric and polytypic species or a single species with polymorphic populations and whether the reported shell size differences, on which the description of three putative species is mainly based, are intrinsic or extrinsic. A fragment of the mitochondrial cytochrome oxidase I (COI) gene was used as an independent genetic marker. We found very little genetic variability in 40 specimens from four populations studied. The nucleotide-sequence diversity (,) within populations ranges from 0.0017 to 0.0056 and the nucleotide-sequence divergence (Dxy) between populations from 0.0018 to 0.0051. The phylogenetic network is very compact with two ,groups' of haplotypes that are separated by only two nucleotide positions. A plot of pairwise nucleotide differences against pairwise shell size differences did not reveal any distinct clusters and a Mantel test did not show any significant associations between the two matrices. Based on the very low genetic diversity, the lack of distinct clusters in the phylogenetic network and the lack of concordance between morphological and genetic differentiation it is concluded that only one species is involved, Adriohydrobia gagatinella. The previously reported morphogroups within Adriohydrobia are probably due to a discrete age structure in these population and/or due to the effect of trematode-induced gigantism. The observed genetic patterns in Adriohydrobia indicate a rapid population growth from an ancestral population of small evolutionary-effective size. The present study stresses the importance of testing species-level hypotheses based on shell characters using one or more independent markers. Die Gattung Adriohydrobia (Hydrobiidae: Gastropoda): polytypische Arten oder polymorphe Populationen? Schalenmerkmale spielen historisch eine wichtige Rolle bei der Bestimmung von Molluskenarten. Die alleinige Nutzung von Schalenmerkmalen für systematische und taxonomische Arbeiten ist jedoch in vielen Gruppen umstritten, da die relativ wenigen Schalenmerkmale oft sehr variabel und durch einen hohen Grad von Homoplasie gekennzeichnet sind. In der vorliegenden Arbeit wurde die Gattung AdriohydrobiaRadoman, 1973 als Fallbeispiel genutzt, um Beziehungen von Arten innerhalb einer Gattung zu untersuchen, die hauptsächlich anhand ihrer Schalengröße unterschieden werden. Es wurde getestet, ob die Gattung mehrere sympatrische und polytypische Arten oder nur eine Art mit polymorphen Populationen umfasst. Darüber hinaus wurde untersucht, ob die dokumentierten Unterschiede in der Schalenhöhe, auf welchen die Beschreibung der drei potentiellen Arten der Gattung hauptsächlich beruhte, intrinsisch oder extrinsisch sind. Als unabhängiger genetischer Marker wurde ein Fragment des mitochondrialen Gens für Cytochromoxidase I (COI) verwendet. Die untersuchten 40 Individuen von vier Populationen zeichneten sich durch eine nur sehr geringe genetische Variabilität aus. Die Nukleotidsequenz-Diversität (,) innerhalb der Populationen variiert zwischen 0.0017 und 0.0056; die Nukleotidsequenz-Divergenz (Dxy) zwischen den Populationen reicht von 0.0018 bi 0.0051. Das phylogenetische Netzwerk ist sehr kompakt und umfasst zwei ,Gruppen' von Haplotypen, welche durch nur zwei Nukleotidpositionen getrennt sind. Die graphische Darstellung von paarweisen Nukleotid-Differenzen gegen paarweise Gehäusegröße-Differenzen lässt keine diskreten Gruppen erkennen und ein Mantel-Test zeigt keine signifikanten Beziehungen zwischen den Matrices. Aufgrund der geringen genetischen Differenzierung, des Fehlens von diskreten Gruppen im phylogenetischen Netzwerk und des nicht-signifikanten Zusammenhanges von morphologischer and genetischer Differenzierung wird geschlussfolgert, dass nur eine Art involviert ist, Adriohydrobia gagatinella. Die in der Literatur dokumentierten Morpho-Gruppen beruhen vermutlich auf einer diskreten Altersstruktur in diesen Populationen und/oder auf den Auswirkungen von trematoden-induziertem Gigantismus. Die festgestellten genetischen Muster in Adriohydrobia lassen das schnelle Wachstum einer Stammpopulation von geringer evolutionär-effektiver Größe vermuten. Die vorliegende Studie ist ein Beispiel dafür, wie wichtig es sein kann, auf Schalenmerkmale beruhende Arthypothesen mit unabhängigen Markern zu verifizieren. [source] The taxonomic status, distribution and conservation of the lowland anoa Bubalus depressicornis and mountain anoa Bubalus quarlesiMAMMAL REVIEW, Issue 1 2005J. A. BURTON ABSTRACT 1.,The anoas are two species of dwarf buffalo, the lowland anoa Bubalus depressicornis and mountain anoa Bubalus quarlesi that are endemic to the island of Sulawesi, Indonesia. The classification of the subgenus Anoa within Bubalus is upheld by assessment of recent genetic and morphological research. The classification of anoas into two species is still debated, but with the absence of significant opposing evidence, this position is adopted here. 2.,Information about the distribution of the two species is presented that adds to but largely supports existing reports. However, it is still uncertain whether the two putative species are sympatric or parapatric in their distribution. A review of anoa distribution from historical reports and recent field data (1990s to 2002) highlights their decline throughout Sulawesi, especially in the southern and north-eastern peninsulas. The decline has been attributed to local hunting for meat and habitat loss. Most populations are rapidly becoming fragmented, suggesting that the conservation of viable populations may eventually require management of metapopulations. 3.,There is an urgent requirement for conservation efforts to: (i) protect anoas from hunting; (ii) prevent habitat loss in key sites; (iii) complete genetic studies to better determine the number of anoa taxa and Management Units and assess their distribution; and (iv) determine the status of the remaining anoa populations. [source] | ||||||||||