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Polar Environment (polar + environment)
Selected AbstractsMutagenesis of ,-tubulin cysteine residues in Saccharomyces cerevisiae: Mutation of cysteine 354 results in cold-stable microtubulesCYTOSKELETON, Issue 2 2001Mohan L. Gupta Jr. Abstract Cysteine residues play important roles in the control of tubulin function. To determine which of the six cysteine residues in ,-tubulin are critical to tubulin function, we mutated the cysteines in Saccharomyces cerevisiae ,-tubulin individually to alanine and serine residues. Of the twelve mutations, only three produced significant effects: C12S, C354A, and C354S. The C12S mutation was lethal in the haploid, but the C12A mutation had no observable phenotype. Based on interactive views of the electron crystallographic structure of tubulin, we suggest that substitution of serine for cysteine at this position has a destabilizing effect on the interaction of tubulin with the exchangeable GTP. The two C354 mutations, although not lethal, produced dramatic effects on microtubules and cellular processes that require microtubules. The C354 mutant cells had decreased growth rates, a slowed mitosis, increased resistance to benomyl, and impaired nuclear migration and spindle assembly. The C354A mutation produced a more severe phenotype than the C354S mutation: the haploid cells had chromosome segregation defects, only 50% of cells in a culture were viable, and a significant percentage of the cells were misshapened. Cytoplasmic microtubules in the C354S and C354A cells were longer than in the control strain and spindle structures appeared shorter and thicker. Both cytoplasmic and spindle microtubules in the two C354 mutants were extremely stable to cold temperature. After 24 h at 4°C, the microtubules were still present and, in fact, very long and thick tubulin polymers had formed. Evidence exists to indicate that the C354 residue in mammalian tubulin is near the colchicine binding site and the electron crystal structure of tubulin places the residue at the interface between the ,- and ,-subunits. The sulfhydryl group is situated in a polar environment, which may explain why the alanine mutation is more severe than the serine mutation. When the C12S and the two C354 mutations were made in a diploid strain, the mutated tubulin was incorporated into microtubules and the resulting heterozygotes had phenotypes that were intermediate between those of the mutated haploids and the wild-type strains. The results suggest that the C12 and C354 residues play important roles in the structure and function of tubulin. Cell Motil. Cytoskeleton 49:67,77, 2001. © 2001 Wiley-Liss, Inc. [source] Effects of pressure on the activity and spectroscopic properties of carboxyl proteinasesFEBS JOURNAL, Issue 3 2001Apparent correlation of pepstatin-insensitivity, pressure response The pressure dependence of the activity and spectroscopic properties of four carboxyl proteinases were investigated. Two were pepstatin-sensitive carboxyl proteinases (porcine pepsin and proteinase A from baker's yeast) and two were pepstatin-insensitive carboxyl proteinases (from Pseudomonas sp. 101 (pseudomonapepsin; PCP) and Xanthomonas sp. T-22 (xanthomonapepsin; XCP)). The specificity constant [kcat/Km(app)] of PCP and XCP for a synthetic peptide substrate showed only a slight decrease with increasing pressure, whereas pepsin and proteinase A showed substantial disactivation at higher pressures. The calculated apparent activation volume (,Vkcat/Km) was about 1, 3, 13, and 14 mL·mol,1 for PCP, XCP, pepsin, and proteinase A, respectively. The hydrolysis of acid-denatured myoglobin by the four carboxyl proteinases was only slightly affected by high pressure (except for proteinase A at 400 MPa), in contrast to the results for the peptide hydrolysis. In fact, PCP, XCP, and proteinase A actually showed slightly higher degradations of acid-denatured myoglobin at higher pressures. The residual activities of these enzymes after the incubation at high pressures implied a pressure-induced stabilization towards autolysis. The changes in the fourth derivative near-UV absorbance spectrum of the four enzymes in aqueous solution were measured at various pressures from 0.1 to 400 MPa. Upon an increase in pressure, the peaks from PCP and XCP red-shifted slightly, whereas pepsin and proteinase A blue-shifted substantially, thus indicating a more polar environment. The intrinsic fluorescence also decreased upon increasing pressure. However, the change for XCP was rather small, but the change for the other three was very large. The changes in the peak wavelength for pepsin and proteinase A were characteristic, and also indicated a more polar environment under high pressure. An analysis by the center of spectra mass (CSM) gave the ,G and ,V of transition as 9.8 kJ·mol,1 and ,24 mL·mol,1 (pepsin) and 11.7 kJ·mol,1 and ,43 mL·mol,1 (proteinase A), respectively, by assuming a simple two-state transition. The circular dichroism (CD) showed relatively small changes after 1-h incubations at 400 MPa, indicating that the secondary structures were largely maintained. [source] Synthesis and Chemical Properties of Diacetylenes with Pyridinium and 4,4,-Bipyridinium GroupsHELVETICA CHIMICA ACTA, Issue 5 2010Isao Yamaguchi Abstract Diacetylenes (DAs) having a dipolar D- , -A structure (D=donor: amino group; ,=, -conjugation core; A=acceptor: pyridinium (Py) and bipyridinium (BPy) groups), i.e., 4 (APBPyDA) and 5 (APPyPyDA), or an A- , -A structure, i.e., 7 (DBPyDA) and 8 (PyDA(Cl)), were obtained by 1,:,1 and 1,:,2 reactions of 4,4,-(buta-1,3-diyne-1,4-diyl)bis[benzenamine] (APDA; 3) with 1-(2,4-dinitrophenyl)-1,-hexyl-4,4,-bipyridinium bromide chloride (1,:,1,:,1) (1), 1-(2,4-dinitrophenyl)-4-(pyridin-4-yl)pyridinium chloride (2), or 1-(2,4-dinitrophenyl)pyridinium chloride (6) (Schemes 1 and 2). The anion-exchange reactions of 8 with NaI and Li(TCNQ) (TCNQ,=2,2,-(cyclohexa-2,5-diene-1,4-diylidene)bis[propanedinitrile] radical ion (1,)) yielded the corresponding I, and TCNQ, salts 9 (PyDA(I)) and 10 (PyDA(TCNQ)). Compounds 10 and 4 exhibited a UV/VIS absorption due to a charge transfer between the TCNQ, and the pyridinium groups and a strong solute,solvent interaction of a dipolar solute molecule in the polar environment, respectively. Compounds 8,10 exhibited photoluminescence in solution, whereas 4 and 7 did not because of the presence of the 4,4,-bipyridinium quenching groups. Differential-scanning-calorimetry (DSC) measurements suggested that the DAs obtained in this study can be converted into poly(diacetylenes) by thermal polymerization. [source] Rational determination of charge distributions for free energy calculationsJOURNAL OF COMPUTATIONAL CHEMISTRY, Issue 4 2003Christophe Chipot Abstract Point charges derived from RHF/6-31G* electrostatic potentials are attractive because they tend to exaggerate the polarity of solvated molecules, thereby compensating in an average fashion missing induction effects. In the context of free energy calculations, wherein the molecule is transferred from a polar environment to a nonpolar one, we propose a more rational approach based on a self-consistent reaction field computation at a higher level of theory, supplemented by an estimation of the corresponding distortion energy to account for the change of polarity of the surroundings. Application of this method to the test cases acetamide, acetic acid, methyl acetate and phenol, using multinanosecond molecular dynamics/"umbrella sampling" simulations, yields consistent hydration free energies in reasonably good agreement with experiment. © 2003 Wiley Periodicals, Inc. J Comput Chem 24: 409,415, 2003 [source] Design and power management of a solar-powered "Cool Robot" for polar instrument networksJOURNAL OF FIELD ROBOTICS (FORMERLY JOURNAL OF ROBOTIC SYSTEMS), Issue 7 2007Laura E. Ray The Cool Robot is a four-wheel-drive, solar-powered, autonomous robot designed to support summertime science campaigns in Antarctica and Greenland over distances exceeding 500 km. This paper provides an overview of key features of the robot, including design for good mobility, high efficiency, and long-term deployment under solar power in harsh polar environments. The Cool Robot's solar panel box, comprising panels on four sides and a top panel, encounters insolation variations with a bandwidth of up to 1 Hz due to sastrugi. The paper details a unique photovoltaic control algorithm to accommodate these variations. We deployed the robot at Summit Camp, Greenland to validate its mobility and power budget and to assess the photovoltaic control system. The 61 kg robot drove continuously at 0.78 m/s on soft snow, its 160 W average power demand met by solar power alone under clear skies above 16° sun elevation. The power-control system reliably matched input with demand as insolation varied during testing. A simple GPS waypoint-following algorithm provides low-bandwidth path planning and course correction and demonstrated reliable autonomous navigation during testing over periods of 5,8 h. Field data validate the Cool Robot design models and indicate that it will exceed its design goal of carrying a 15 kg payload 500 km across Antarctica in 2 weeks. A brief description of instrument payloads and scientific studies aided by networks of such autonomous solar robots is provided. © 2007 Wiley Periodicals, Inc. [source] Genetic response to rapid climate change: it's seasonal timing that mattersMOLECULAR ECOLOGY, Issue 1 2008W. E. BRADSHAW Abstract The primary nonbiological result of recent rapid climate change is warming winter temperatures, particularly at northern latitudes, leading to longer growing seasons and new seasonal exigencies and opportunities. Biological responses reflect selection due to the earlier arrival of spring, the later arrival of fall, or the increasing length of the growing season. Animals from rotifers to rodents use the high reliability of day length to time the seasonal transitions in their life histories that are crucial to fitness in temperate and polar environments: when to begin developing in the spring, when to reproduce, when to enter dormancy or when to migrate, thereby exploiting favourable temperatures and avoiding unfavourable temperatures. In documented cases of evolutionary (genetic) response to recent, rapid climate change, the role of day length (photoperiodism) ranges from causal to inhibitory; in no case has there been demonstrated a genetic shift in thermal optima or thermal tolerance. More effort should be made to explore the role of photoperiodism in genetic responses to climate change and to rule out the role of photoperiod in the timing of seasonal life histories before thermal adaptation is assumed to be the major evolutionary response to climate change. [source] Conservation of natural wilderness values in the Port Davey marine and estuarine protected area, south-western TasmaniaAQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 3 2010Graham J. Edgar Abstract 1.Port Davey and associated Bathurst Harbour in south-western Tasmania represent one of the world's most anomalous estuarine systems owing to an unusual combination of environmental factors. These include: (i) large uninhabited catchment protected as a National Park; (ii) ria geomorphology but with fjord characteristics that include a shallow entrance and deep 12-km long channel connecting an almost land-locked harbour to the sea; (iii) high rainfall and riverine input that generate strongly-stratified estuarine conditions, with a low-salinity surface layer and marine bottom water; (iv) a deeply tannin-stained surface layer that blocks light penetration to depth; (v) very low levels of nutrients and low aquatic productivity; (vi) weak tidal influences; (vii) marine bottom water with stable temperature throughout the year; (viii) numerous endemic species; (ix) strongly depth-stratified benthic assemblages exhibiting high compositional variability over small spatial scales; (x) deepsea species present at anomalously shallow depths; (xi) no conspicuous introduced taxa; (xii) a predominance of fragile sessile invertebrates, including slow-growing fenestrate bryozoans; and (xii ) sponge spicule- and bryozoan-based sediments that are more characteristic of deep sea and polar environments than those inshore. 2.Although this region has historically been protected by its isolation, seven major anthropogenic stressors now threaten its natural integrity: boating, fishing, dive tourism, nutrient enrichment, introduced species, onshore development, and global climate change. These threats are not randomly distributed but disproportionately affect particular habitat types. 3.For management of environmental risk, the Port Davey,Bathurst Harbour region is subdivided into six biophysical zones, each with different ecological characteristics, values, and types and levels of potential threat. In response to the various threats, the Tasmanian Government has enacted an adaptive management regime that includes a multi-zoned marine protected area and the largest ,no-take' estuarine protected area in Australia. Copyright © 2009 John Wiley & Sons, Ltd. [source] | |||||||||||||