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Phylogenetic Position (phylogenetic + position)
Selected AbstractsTWO SNOW SPECIES OF THE QUADRIFLAGELLATE GREEN ALGA CHLAINOMONAS (CHLOROPHYTA, VOLVOCALES): ULTRASTRUCTURE AND PHYLOGENETIC POSITION WITHIN THE CHLOROMONAS CLADE,JOURNAL OF PHYCOLOGY, Issue 4 2008Philip M. Novis The quadriflagellate snow alga Chlainomonas Christen, distributed in New Zealand and North America, has several unusual structural attributes. A process assumed to be cytokinesis involves extrusion of protoplasm from the parent through a narrow canal, C. kolii (J. T. Hardy et Curl) Hoham produces a net-like outer envelope rather than a cell wall, and the flagellar basal apparatus of Chlainomonas consists of two semi-independent pairs of basal bodies. Structural connections between basal body pairs appear minimal, but a connecting system different from that observed in other genera exists within each pair. Phylogenetic analysis using rbcL sequences places Chlainomonas in the Chloromonas clade, other known members of which are all biflagellate. Chlainomonas is split into two robust lineages, with New Zealand collections sharing an origin with northern North American collections. Although the quadriflagellate condition is regarded as ancestral in the Chlorophyceae, we speculate,based on ultrastructural and molecular data presented here,that Chlainomonas represents a derived form that has arisen from fusion of two ancestral biflagellate cells. Other explanations (for example, that Chlainomonas represents a diploid form of a biflagellate species) are remotely possible but are presently at odds with extensive observations of field material. Improvements in techniques for experimental manipulation of these sensitive cryophiles will be required to fully characterize their structure and progress our understanding of their biology. [source] GENE SEQUENCE DIVERSITY AND THE PHYLOGENETIC POSITION OF ALGAE ASSIGNED TO THE GENERA PHAEOPHILA AND OCHLOCHAETE (ULVOPHYCEAE, CHLOROPHYTA),JOURNAL OF PHYCOLOGY, Issue 4 2004Charles J. O'Kelly The phylogenetic position of microfilamentous marine green algae assigned to the species Phaeophila dendroides, Entocladia tenuis (Phaeophila tenuis, and Ochlochaete hystrix was examined through phylogenetic analyses of nuclear-encoded small subunit rDNA and chloroplast-encoded tufA gene sequences. These analyses placed the P. dendroides strains within the Ulvophyceae, at the base of a clade that contains representatives of the families Ulvaceae, Ulvellaceae, and the species Bolbocoleon piliferum, supporting an earlier hypothesis that P. dendroides constitutes a distinct lineage. Substantial divergence in both nuclear and plastid DNA sequences exists among strains of P. dendroides from different geographic localities, but these isolated strains are morphologically indistinguishable. The lineage may have an accelerated rate of gene sequence evolution relative to other microfilamentous marine green algae. Entocladia tenuis and O. hystrix are placed neither in the P. dendroides clade nor in the Ulvellaceae as previous taxonomic schemes predicted but instead form a new clade or clades at the base of the Ulvaceae. Ruthnielsenia gen. nov. is proposed to accommodate Kylin's species, which cannot be placed in Entocladia (=Acrochaete), Phaeophila, or Ochlochaete. Ruthnielsenia tenuis (Kylin) comb. nov., previously known only from Atlantic coasts, is reported for the first time from the Pacific coast of North America (San Juan Island, WA, USA). Isolates of R. tenuis from the Atlantic and Pacific coasts of North America have identical small subunit rDNA and tufA gene sequences. [source] THE TAXONOMIC AND PHYLOGENETIC POSITION OF THE PLESIOSAUROIDEA FROM THE LOWER JURASSIC POSIDONIA SHALE OF SOUTH-WEST GERMANYPALAEONTOLOGY, Issue 3 2007FRANZISKA GROßMANNArticle first published online: 17 MAY 200 Abstract:, The two plesiosauroid species from the Posidonia shale of Holzmaden, ,Plesiosaurus'guilelmiimperatoris and ,Plesiosaurus'brachypterygius, do not belong to Plesiosaurus but form new monotypic genera. The new genus Hydrorion is erected for ,P.'brachypterygius, and the genus Seeleyosaurus is re-established for ,P.'guilelmiimperatoris. The recently described species Plesiopterys wildii is regarded as a junior synonym of S. guilelmiimperatoris. A short phylogenetic analysis shows that S. guilelmiimperatoris and Muraenosaurus are basal elasmosaurs. H. brachypterygius, Occitanosaurus tournemirensis from France and Microcleidus homalospondylus from England form a monophyletic clade, which is the sister taxon to the Cretaceous elasmosaurs. A palaeobiogeographical comparison of plesiosaur localities in the Lower Jurassic shows distinct palaeobiogeographical zones for the Toarcian, with different plesiosaur taxa in England, Germany and France. [source] Revisiting the Phylogenetic Position of Synchroma grandeTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 4 2009VISHWANATH PATIL ABSTRACT. Two new classes Synchromophyceae and Picophagea, belonging to the heterokonts, have been proposed recently in separate studies of 18S rRNA phylogenies. Here we revise the 18S phylogeny of these classes by including all available sequenced species and applying Bayesian and maximum likelihood methods; Synchroma grande groups with the photophagotrophic Chlamydomyxa labyrinthuloides with high statistical support. This clade is sister to Chrysophyceae, together they share a common ancestry. Our results show that the creation of class Synchromophyceae by Horn et al. was premature, because they did not include data from the closely related C. labyrinthuloides and Picophagus flagellatus species. A revision of these classes should include additional species and most likely multigene phylogenies. [source] Morphology and Phylogenetic Position of Eucomonympha imla (Parabasalia: Hypermastigida)THE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 4 2007KEVIN J. CARPENTER ABSTRACT. Eucomonympha imla is a hypermastigote parabasalian found in the gut of the wood-feeding cockroach Cryptocercus punctulatus. It has received little attention since its original description in 1934 as the type species of the genus Eucomonympha and the family Eucomonymphidae. We used light and scanning electron microscopy to characterize surface morphology and organelles, with particular attention to the form of the rostrum, operculum, nucleus, and parabasals. Two previously unrecognized groups of bacterial ectobionts were observed,spirochetes that associate with the flagella and one or more types of rod-shaped bacteria that adhere to the cell surface. The small subunit rRNA (SSU rRNA) sequence was determined from manually isolated cells, and phylogenetic analyses place E. imla in a strongly supported clade with the genera Teranympha and Pseudotrichonympha and three sequences from formally undescribed termite symbionts provisionally assigned to Eucomonympha. Unexpectedly, the Eucomonympha isolates from termites are more closely related to Teranympha than to the type species, suggesting these should not be classified as species of Eucomonympha, despite their morphological similarity to E. imla. Eucomonymphidae fall within a strongly supported Trichonymphida (also including Hoplonymphidae, Trichonymphidae, and Staurojoeninidae), but this clade branches separately from other hypermastigote groups (lophomonads and spirotrichonymphids), suggesting that hypermastigotes are polyphyletic. [source] Phylogenetic position of Salmo(Platysalmo)platycephalus Behnke 1968 from south-central Turkey, evidenced by genetic dataJOURNAL OF FISH BIOLOGY, Issue 4 2004S. Su To determine whether the current classification of the flathead trout Salmo (Platysalmo) platycephalus, endemic to the upper reaches of the Zamanti River system, Turkey, based solely on morphology, is in congruence with molecular phylogeny, the nucleotide sequence variation in mitochondrial (control region and cytochrome b gene) and nuclear (internal transcribed spacer of rRNA genes) DNA for the flathead trout and various representatives of the genus Salmo was studied. On the basis of pair-wise genetic distance estimates, the highest differences were found to exist between the flathead trout and S. salar, S. ohridana and S. obtusirostris, whereas the differences between the flathead trout and S. trutta were minimal. All the analyses performed firmly positioned the flathead trout within the Adriatic phylogeographic lineage of S. trutta; however, the exact position of the flathead trout within the Adriatic cluster was irresolvable. Accordingly, classifying the flathead trout as a subgenus of Salmo is unjustifiable and its reclassification in a lower taxonomic category is suggested by the present study. [source] Evolution and regeneration of the planarian central nervous systemDEVELOPMENT GROWTH & DIFFERENTIATION, Issue 3 2009Yoshihiko Umesono More than 100 years ago, early workers realized that planarians offer an excellent system for regeneration studies. Another unique aspect of planarians is that they occupy an interesting phylogenetic position with respect to the nervous system in that they possess an evolutionarily primitive brain structure and can regenerate a functional brain from almost any tiny body fragment. Recent molecular studies have revisited planarian regeneration and revealed key information about the cellular and molecular mechanisms underlying brain regeneration in planarians. One of our great advances was identification of a gene, nou-darake, which directs the formation of a proper extrinsic environment for pluripotent stem cells to differentiate into brain cells in the planarian Dugesia japonica. Our recent findings have provided mechanistic insights into stem cell biology and also evolutionary biology. [source] An investigation of the cranial evolution of Asian pitvipers (Serpentes: Crotalinae), with comments on the phylogenetic position of Peltopelor macrolepisACTA ZOOLOGICA, Issue 4 2010Peng Guo Abstract Guo, P., Jadin, R.C., Malhotra, A. and Li, C. 2009. An investigation of the cranial evolution of Asian pitvipers (Serpentes: Crotalinae), with comments on the phylogenetic position of Peltopelor macrolepis,Acta Zoologica (Stockholm) 91: 402,407. We investigated the evolution of 12 cranial characters of 31 species of Asian pitvipers by examining the character state changes on a consensus tree modified from broadly consistent molecular results. We found that these characters appear stable with only one intraspecific polymorphism. Nine of the 12 characters form useful synapomorphies, whereas three are ambiguous and evolutionarily plastic. Clades that are supported with numerous apomorphies are the Trimeresurus group [consisting of the recently defined genera Trimeresurus sensuMalhotra and Thorpe (2004), Parias, Popeia, Viridovipera, Himalayophis, and Cryptelytrops] and the genera Protobothrops, Parias, and Viridovipera. Two species previously considered as congeners but now known to be distantly related, Ovophis monticola and ,Ovophis'okinavensis, have nearly identical character states, demonstrating substantial convergence in cranial characters. Finally, we attempt to infer the phylogenetic position of Peltopelor macrolepis by comparing its cranial features with that of other pitvipers. [source] Evolution of invertebrate nervous systems: the Chaetognatha as a case studyACTA ZOOLOGICA, Issue 1 2010Steffen Harzsch Abstract Harzsch, S. and Wanninger, A. 2010. Evolution of invertebrate nervous systems: the Chaetognatha as a case study. ,Acta Zoologica (Stockholm) 91: 35,43 Although recent molecular studies indicate that Chaetognatha may be one of the earliest Bilaterian offshoots, the phylogenetic position of this taxon still is a matter of ongoing debate. In this contribution, we review recent attempts to contribute phylogenetic information on the Chaetognatha by analysing structure and development of their nervous system (neurophylogeny). Analysing this group of organisms also has a major impact on our understanding of nervous system evolution in Bilateria. We review recent evidence from this field and suggest that Urbilateria already was equipped with the genetic toolkit required to build a complex, concentrated central nervous system (CNS), although this was not expressed phenotypically so that Urbilateria was equipped with a nerve plexus and not a CNS. This implies that in the deep metazoan nodes, concentration of the ancestral plexus occurred twice independently, namely once after the protostome,deuterostome split on the branch leading to the protostomes (resulting in a ventrally positioned nerve cord) and once along the chordate line (with a dorsal nerve cord). [source] On the phylogenetic position of Gogonasus andrewsae Long 1985, within the TetrapodomorphaACTA ZOOLOGICA, Issue 2009Timothy Holland Abstract Within the Tetrapodomorpha, the Late Devonian Gogonasus andrewsae of the Gogo Formation, Gogo, Western Australia, has occupied an uncertain phylogenetic position. Following the description of several well-preserved three-dimensional skulls and pectoral girdles, the discovery of the first complete specimen (NMV P221807) made Gogonasus one of the best-known tetrapodomorph fish. Recent studies of pectoral fin structure and the spiracular opening of Gogonasus have suggested an unexpected affinity with ,elpistostegalid' fish such as Tiktaalik. Subsequent work has refuted characters linking these taxa, with phylogenetic analysis of the Tetrapodomorpha placing Gogonasus basal to megalichthyids and tristichopterids. In this paper we reanalyse characters linking Gogonasus with ,elpistostegalid' fish and those supporting the placement of Gogonasus crownward of Eusthenopteron. New phylogenetic analyses of the Tetrapodomorpha show a revised phylogenetic position of Gogonasus as being deeply nested within the Tetrapodomorpha, crownward of Osteolepis and Megalichthys, but basal to Eusthenopteron+,elpistostegalids'. Functional consideration of the spiracular structure suggests a position of Gogonasus closer to ,elpistostegalids', although data is lacking from other less-well-preserved taxa to fully test the hypothesis. The humerus of the Late Devonian lungfish Chirodipterus from Gogo, Western Australia is figured for comparative purposes. [source] The humerus of Panderichthys in three dimensions and its significance in the context of the fish,tetrapod transitionACTA ZOOLOGICA, Issue 2009Catherine A. Boisvert Abstract The humerus of Panderichthys has been considered to represent a transitional form between that of tetrapodomorph fish such as Eusthenopteron and tetrapods such as Acanthostega. The previous description was based on flattened material and was analysed in the context of the few fossils known at the time. Since then, several new forms have been described such as Gogonasus, Tiktaalik and an isolated humerus from the Catskill Formation. The humeral morphology of Panderichthys rhombolepis and its interpretation in this new context are therefore reassessed with the help of a three-dimensional model produced with the mimics software based on a computed tomography scan of an unflattened specimen as well as comparisons with the originally described material. The humerus of Panderichthys displays a combination of primitive, derived, intermediate and unique characteristics. It is very similar to the morphology of Tiktaalik but when it differs from it, it is most often more derived despite the more basal phylogenetic position that Panderichthys occupies. What emerges from this study is a much more gradual transformation of the humerus morphology from fish to tetrapods and the ability to distinguish autapomorphies more easily. The picture is more complex than previously believed, with many morphological specializations probably reflecting the breadth of ecological specializations already present at the time. [source] The musculature of three species of gastrotrichs surveyed with confocal laser scanning microscopy (CLSM)ACTA ZOOLOGICA, Issue 3 2006Francesca Leasi Abstract The muscular system of gastrotrichs consists of circular, longitudinal and helicoidal bands that when analysed with confocal laser scanning microscopy, provide new insights into their functional organization and phylogenetic importance. We therefore undertook a comparative study of the muscle organization in three species of Gastrotricha from the orders Macrodasyida (Paradasys sp., Lepidodasyidae; Turbanella sp., Turbanellidae) and Chaetonotida (Polymerurus nodicaudus, Chaetonotidae). The general muscle organization of the marine interstitial macrodasyidans, Paradasys and Turbanella, not only confirms earlier observation on other species but also adds new details concerning the organization and number of helicoidal, longitudinal and other muscle bands (e.g. semicircular band). The freshwater, epibenthic,epiphytic chaetonotid, Polymerurus nodicaudus, has a similar muscular organization to other species of Chaetonotidae, especially species of Chaetonotus, Halichaetonotus and Lepidodermella. Perhaps unique to Polymerurus is the combined presence of an unbranched Rückenhautmuskel (also in Halichaetonotus and Lepidodermella) and a specialized dorsoventral caudal muscle, which flank the splanchnic component of the longitudinal muscles (only in Chaetonotus and Lepidodermella). This combination, together with the presence of splanchnic dorsoventral muscles, known only in Xenotrichulidae, implies a unique phylogenetic position for Polymerurus, and indicates a potential basal position of this taxon among the Chaetonotidae studied so far (i.e. Aspidiophorus, Chaetonotus, Halichaetonotus and Lepidodermella). [source] Host range of Asobara japonica (Hymenoptera: Braconidae), a larval parasitoid of drosophilid fliesENTOMOLOGICAL SCIENCE, Issue 1 2008Shinsuke IDEO Abstract We studied the host range of Asobara japonica, a larval-pupal parasitoid of drosophilid flies. Habitat selection was found to be an important determinant of host range in this parasitoid; it attacked drosophilid larvae breeding on banana and mushrooms, but seldom attacked those breeding on decayed leaves. This parasitoid was able to use diverse drosophilid taxa as hosts. Attack by A. japonica sometimes killed hosts at the larval stage, and therefore parasitoid larvae also died. Drosophila elegans and D. busckii suffered particularly high larval mortality due to the attack by A. japonica (in the latter species only when young larvae were attacked). Many individuals of D. subpulchrella also died at the pupal stage without producing parasitoids when they were parasitized at the late larval stage. In contrast, D. bipectinata, D. ficusphila, D. immigrans, D. formosana and D. albomicans were resistant to attack: large proportions of the larvae of these drosophilid species grew to adulthood, even in the presence of parasitoids. On the basis of phylogenetic information, we concluded that phylogenetic position has only limited importance as a factor determining whether a species is suitable as a host for A. japonica, at least within the genus Drosophila. [source] Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samplesENVIRONMENTAL MICROBIOLOGY, Issue 12 2009William Marande Summary The recent introduction of molecular techniques in eukaryotic microbial diversity studies, in particular those based in the amplification and sequencing of small-subunit ribosomal DNA (SSU rDNA), has revealed the existence of an unexpected variety of new phylotypes. The taxonomic ascription of the organisms bearing those sequences is generally deduced from phylogenetic analysis. Unfortunately, the SSU rDNA sequence alone has often not enough phylogenetic information to resolve the phylogeny of fast-evolving or very divergent sequences, leading to their misclassification. To address this problem, we tried to increase the phylogenetic signal by amplifying the complete eukaryotic rDNA cluster [i.e. the SSU rDNA, the internal transcribed spacers, the 5.8S rDNA and the large-subunit (LSU) rDNA] from environmental samples, and sequencing the SSU and LSU rDNA part of the clones. Using marine planktonic samples, we showed that surveys based on either SSU or SSU + LSU rDNA retrieved comparable diversity patterns. In addition, phylogenetic trees based on the concatenated SSU + LSU rDNA sequences showed better resolution, yielding good support for major eukaryotic groups such as the Opisthokonta, Rhizaria and Excavata. Finally, highly divergent SSU rDNA sequences, whose phylogenetic position was impossible to determine with the SSU rDNA data alone, could be placed correctly with the SSU + LSU rDNA approach. These results suggest that this method can be useful, in particular for the analysis of eukaryotic microbial communities rich in phylotypes of difficult phylogenetic ascription. [source] Tracking the origins of the bilaterian Hox patterning system: insights from the acoel flatworm Symsagittifera roscoffensisEVOLUTION AND DEVELOPMENT, Issue 5 2009Eduardo Moreno SUMMARY Genes of the Hox cluster encode for transcriptional regulators that show collinear expression along the anteroposterior (AP) body axis in all bilateral animals. However, it is still unclear when in the evolutionary history of bilaterians the Hox system first conferred positional identity along the AP-axis. Recent molecular phylogenies have convincingly shown that the acoel flatworms, traditionally classified within the Platyhelminthes, are the sister group of the remaining Bilateria, branching out before the common ancestor of protostomes, and deuterostomes (the so-called PDA). This key phylogenetic position offers the opportunity to search for the presence and early role of Hox cluster genes to pattern the AP axis in acoels. Here, we report on the cloning, genomic arrangement, and expression domains of Hox genes in Symsagittifera roscoffensis. Three Hox genes were detected: one from each of the major groups of Hox genes, which are anterior, central, and posterior. In bacterial artificial chromosome cloning, sequencing, and chromosomal fluorescence in situ hybridization, Hox genes were not observed as being clustered in a unique genomic region. Nevertheless, despite its dispersion within the genome, Hox genes are expressed in nested domains along the AP axis in the juvenile worm. The basic set of Hox genes in acoels and their coarse nested spatial deployment might be the first indicators of the role of Hox genes in the evolution of bilateral symmetry and AP positional identity from a hypothetical radial ancestor. [source] Dynamics and function of intron sequences of the wingless gene during the evolution of the Drosophila genusEVOLUTION AND DEVELOPMENT, Issue 5 2004J. Costas Summary To understand the function and evolution of genes with complex patterns of expression, such as the Drosophila wingless gene, it is essential to know how their transcription is regulated. However, extracting the relevant regulatory information from a genome is still a complex task. We used a combination of comparative genomics and functional approaches to identify putative regulatory sequences in two introns (1 and 3) of the wingless gene and to infer their evolution. Comparison of the sequences obtained from several Drosophila species revealed colinear and well-conserved sequence blocks in both introns. Drosophila willistoni showed a rate of evolution, in both introns, faster than expected from its phylogenetic position. Intron 3 appeared to be composed of two separate modules, one of them lost in the willistoni group. We tested whether sequence conservation in noncoding regions is a reliable indicator of regulatory function and, if this function is conserved, by analyzing D. melanogaster transgenic reporter lines harboring intron 3 sequences from D. melanogaster (Sophophora subgenus) and the species from the Drosophila subgenus presenting the most divergent sequence, D. americana. The analysis indicated that intron 3 contains pupal enhancers conserved during the evolution of the genus, despite the fact that only 30% of the D. melanogaster intron 3 sequences lie in conserved blocks. Additional analysis of D. melanogaster transgenic reporter lines harboring intron 3 sequences from D. willistoni revealed the absence of an abdomen-specific expression pattern, probably due to the above-mentioned loss of a regulatory module in this species. [source] A large collection of Presbyornis (Aves, Anseriformes, Presbyornithidae) from the late Paleocene and early Eocene of MongoliaGEOLOGICAL JOURNAL, Issue 4 2010Evgeny N. Kurochkin Abstract We describe a large collection of fossil ,waterfowl' bones that are referable to the extinct clade Presbyornithidae (Anseriformes). All of these fossils were collected between 1971 and 1994 from Upper Paleocene and Lower Eocene sediments at the Tsagaan Khushuu site in the Gobi Desert of southern Mongolia. The collection includes specimens referred to a new small species within the genus Presbyornis Wetmore, 1926 as well as large numbers of bones that we place in the genus Presbyornis. On this basis of the Tsagaan Khushuu collection we suggest that several species of Presbyornis likely coexisted in this region; indeed, the presence of large numbers of middle-sized, morphologically consistent but probably ecologically disparate species at the Tsagaan Khushuu site is consistent with the range of variation seen, for example, in taxa of extant dabbling ducks (Anatini). Although the anatomy and phylogenetic position of Presbyornithidae (in particular Presbyornis) are well known, this material from Mongolia further demonstrates the prevalence of these birds in aquatic and semi-aquatic habitats by the earliest Paleogene. Because presbyornithids are also well documented from the late Cretaceous, their palaeoecology and morphological diversity provides a clue to selective avian survivorship across the Cretaceous-Paleogene (K-Pg) boundary. Copyright © 2009 John Wiley & Sons, Ltd. [source] Morphological description, biometry and phylogenetic position of the skull of Ngawi 1 (east Java, Indonesia)INTERNATIONAL JOURNAL OF OSTEOARCHAEOLOGY, Issue 6 2003H. Widianto Abstract The skull of Ngawi 1 was discovered fortuitously in August 1987 on the left bank of the river Solo near the village of Selopuro (east Java, Indonesia). It is a complete, well preserved and strongly mineralized calvaria. The present article provides a complete description of this specimen. Its general morphological pattern is first considered; then, each anatomical complex is considered individually, allowing us a comparison with other Asian Pleistocene fossils. A broad biometric framework and a morphological database are both used to perform a cladistic analysis aiming at a more accurate determination of the phylogenetic position of this skull among ,Homo erectus'. This work confirms that Ngawi 1 is closer to the Ngandong-Sambungmachan series than to the Trinil-Sangiran series. Following the hypothesis of a young age (40,000 years) for the former series, the question is whether this skull belongs to a subspecies of Homo sapiens, as suggested by early authors, or to a separate species, Homo soloensis. An evolutionary process is suggested here, where Ngawi 1 belongs to a particular human group that is geographically and chronologically restricted. This Indonesian human group may have evolved at the same time as the Neandertals in Europe, an area which represented the westernmost end of Eurasia when Indonesia was its easternmost end. The question is raised as to whether insularity, that isolated this taxon, is comparable to the cool climate which isolated the Neandertals for thousands of years. If so, the Ngawi-Ngandong-Sambungmachan series might have evolved from an older, local Homo erectus population. On the other hand, due to local, drastic volcano-tectonic events that occurred 71,000 years ago, and catastrophic events 780,000 years ago, the first inhabitants of Java may have disappeared. According to this alternative hypothesis, Ngawi 1 could be one of the new invaders from continental Asia. Copyright © 2003 John Wiley & Sons, Ltd. [source] Expression of synapsin and co-localization with serotonin and RFamide-like immunoreactivity in the nervous system of the chordoid larva of Symbion pandora (Cycliophora)INVERTEBRATE BIOLOGY, Issue 1 2010Ricardo Cardoso Neves Abstract. Cycliophora is one of the most recently described metazoan phyla and hitherto includes only two species: Symbion pandora and Symbion americanus. With a very complex life cycle, cycliophorans are regarded as an enigmatic group with an uncertain phylogenetic position, although they are commonly considered lophotrochozoan protostomes. In order to extend the database concerning the distribution of immunoreactive substances in the free-swimming chordoid larva of S. pandora, we investigated synapsin immunoreactivity using fluorescence-coupled antibodies in combination with confocal laserscanning microscopy. Moreover, we analyzed the co-localization patterns of synapsin, serotonin, and RFamide-like immunoreactivity in the chordoid larva by 3D imaging technology based on the confocal microscopy image stacks. Synapsin is expressed in large parts of the bilobed anterior cerebral ganglion including anterior and dorsal projections. Two pairs of ventral neurites run longitudinally into the larval body of which the inner pair shows only weak, scattered synapsin immunoreactivity. In addition, a lateral synapsin immunoreactive projection emerges posteriorly from each ventral longitudinal axon. Double immunostaining shows co-localization of synapsin and serotonin in the cerebral ganglion, the outer and the inner ventral neurites, and the anterior projections. Synapsin and RFamide-like immunoreactivity co-occur in the cerebral ganglion, the outer ventral neurites, and the dorsal projections. Accordingly, the cerebral ganglion and the outer ventral neurites are the only neural structures that co-express the two neurotransmitters and synapsin. The overall neuroanatomical condition of the cycliophoran chordoid larva resembles much more the situation of adult rather than larval life cycle stages of a number of spiralian taxa. [source] Multiplex PCR detection of slowly-evolving trypanosomatids and neogregarines in bumblebees using broad-range primersJOURNAL OF APPLIED MICROBIOLOGY, Issue 1 2010I. Meeus Abstract Aims:, The aims of this study were to design universal markers for different protozoan parasites of Bombus spp. based on the phylogenetic position of two important bumblebee parasites Crithidia bombi and Apicystis bombi. Methods and Results:, Standard PCR and extraction techniques were used to amplify and sequence 18S rDNA. Phylogenetic analysis of the rDNA was performed in order to predict the parasite range of the primers. Conclusions:,Crithidia bombi phylogenetically clusters with the trypanosomatids with slowly-evolving SSU-rRNA sequences (SE), while A. bombi is the closest sister group of Mattesia. A multiplex was designed containing an internal control and two broad-range primer pairs, detecting C. bombi and other SE trypanosomatids and also A. bombi and other neogregarines. Significance and Impact of the Study:, Sequence data generated will further improve the current systematics of insect trypanosomatids and gregarines that remain troublesome. Broad-range markers for bumblebee parasites are necessary tools enabling the screening of commercially imported colonies and thus controlling their worldwide distribution and to discover related emerging parasites. [source] The circulatory system in Mysidacea,Implications for the phylogenetic position of Lophogastrida and Mysida (Malacostraca, Crustacea)JOURNAL OF MORPHOLOGY, Issue 4 2007Christian S. Wirkner Abstract The morphology of the circulatory organs in Mysida and Lophogastrida (traditionally combined as Mysidacea) is revisited investigating species so far unstudied. In addition to classical morphological methods, a newly developed combination of corrosion casting with micro computer tomography (MicroCT) and computer aided 3D reconstructions is used. Lophogastrida and Mysida show a highly developed arterial system. The tubular heart extends through the greater part of the thorax and is connected with the ventral vessel via an unpaired descending artery. It is suggested that a distinct ostia pattern supports the monophyly of Mysidacea. The cardiac artery system is more complex in Lophogastrida than in Mysida, consisting of up to 10 pairs of arteries that supply the viscera. In both taxa, an anterior and posterior aorta leads off the heart. In the anterior part of the cephalothorax the anterior aorta forms dilations into which muscles are internalized; these structures are called myoarterial formations. One of these myoarterial formations can also be found in all the other peracarid taxa but not in other Malacostraca. J Morphol., 2007. © 2007 Wiley-Liss, Inc. [source] RELATIONSHIP BETWEEN PRESENCE OF A MOTHER CELL WALL AND SPECIATION IN THE UNICELLULAR MICROALGA NANNOCHLORIS (CHLOROPHYTA),JOURNAL OF PHYCOLOGY, Issue 1 2003Maki Yamamoto The cell division mechanisms of seven strains from six species of Nannochloris Naumann were analyzed and compared with those of three species of Chlorella Beijerinck and Trebouxia erici Ahmadjian using differential interference microscopy and fluorescence microscopy. Nannochloris bacillaris Naumann divides by binary fission and N. coccoides Naumann divides by budding. Distinct triangular spaces or mother cell walls were found in the dividing autosporangia of the other five strains from four species of Nannochloris, three species of Chlorella, and T. erici. In an attempt to infer an evolutionary relationship between nonautosporic and autosporic species of Nannochloris, we constructed a phylogenetic tree of the actin genes using seven strains from six species of Nannochloris, three species of Chlorella, and T. erici. Nannochloris species were polyphyletic in the Trebouxiophyceae group. Two nonautosporic species of N. bacillaris and N. coccoides were monophyletic and positioned distally. Moreover, to determine their phylogenetic position within the Trebouxiophyceae, we constructed phylogenetic tree of 18S rRNA genes adding other species of Trebouxiophyceae. Nannochloris species were polyphyletic in the Trebouxiophyceae and appeared in two different lineages, a Chlorella,Nannochloris group and a Trebouxia,Choricystis group. The nonautosporic species, N. bacillaris and N. coccoides, and three autosporic species of Nannochloris belonged to the Chlorella,Nannochloris group. Nannochloris bacillaris and N. coccoides were also monophyletic and positioned distally in the phylogenetic tree of 18S rRNA genes. These results suggest that autosporulation is the ancestral mode of cell division in Nannochloris and that nonautosporulative mechanisms, such as binary fission and budding, evolved secondarily. [source] Amended biochemical characteristics and phylogenetic position of Treponema mediumMOLECULAR ORAL MICROBIOLOGY, Issue 2 2003F. Nakazawa Umemoto et al. (1997, Int J Syst Bacteriol 47, pp. 67,72) proposed spirochete strain G7201, isolated from the periodontal pocket of an adult patient, as a new species, Treponema medium. They deposited this strain in the American Type Culture Collection (ATCC) as type strain ATCC 700293T. Recently, ATCC suggested that there is a discrepancy between the previous report and the results obtained by ATCC in biochemical tests on T. medium ATCC 700293T. In this study, we re-examined and verified the biochemical characteristics of T. medium. The fermentation pattern of carbohydrates of T. medium resembled that of Treponema vincentii and Treponema denticola, but T. medium was clearly differentiated from T. vincentii in the production of indole, and from T. denticola in the hydrolysis of esculin. Also, sodium dodecylsulfate,polyacrylamide gel electrophoresis (SDS-PAGE) protein profile analysis and phylogenetic comparison of 16S rDNA sequences revealed that T. medium is clearly differentiated from any established treponemal species, which supports the validity of the proposal of Treponema medium as a new species. [source] Tanacetum joharchii sp. nov. (Asteraceae,Anthemideae) from Iran, and its taxonomic position based on molecular dataNORDIC JOURNAL OF BOTANY, Issue 1 2010Ali Sonboli Tanacetum joharchii Sonboli & Kazempour Osaloo sp. nov. (Asteraceae,Anthemideae) is described and illustrated from the Khorasan province, northeast Iran. Tanacetum joharchii is a suffruticulose species from rocky limestone mountains in Hezarmasjed and Binalud (Khorasan province) at altitudes of 1900,2500 m a.s.l. The diagnostic morphological characteristics that distinguish it from the allied species T. kotschyi are presented. In addition, a distribution map of T. joharchii and the related species is given. In order to provide some hypothesis on its phylogenetic position, a molecular phylogenetic analysis based on nrDNA ITS sequence data of 14 representatives of the genus Tanacetum was performed. [source] TWO NEW PARROTS (PSITTACIFORMES) FROM THE LOWER EOCENE FUR FORMATION OF DENMARKPALAEONTOLOGY, Issue 3 2008DAVID M. WATERHOUSE Abstract:, Two new fossil psittaciform birds from the Lower Eocene ,Mo Clay' (Fur Formation) of Denmark (c. 54 Ma) are described. An unnamed specimen is assigned to the extinct avian family of stem-group parrots, Pseudasturidae (genus and species incertae sedis), while a second (Mopsitta tanta gen. et sp. nov.) is the largest fossil parrot yet known. Both specimens are the first fossil records of these birds from Denmark. Although the phylogenetic position of Mopsitta is unclear (it is classified as family incertae sedis), this form is phylogenetically closer to Recent Pstittacidae than to other known Palaeogene psittaciforms and may, therefore, represent the oldest known crown-group parrot. [source] A Reappraisal Of Coletta Seca, A Basal Procolophonoid Reptile From The Lower Triassic Of South AfricaPALAEONTOLOGY, Issue 5 2002Sean P. Modesto The skeletal structure of Coletta seca, a small procolophonoid reptile from the Lower Triassic Lystrosaurus Assemblage Zone of South Africa, is reconsidered in light of descriptions of other procolophonoids. The presence of a single row of relatively large, fang,like vomerine teeth, identified originally as the single autapomorphy of this taxon, is reinterpreted as two rows of parachoanal vomerine teeth that are similar in organization to those of coeval procolophonids from Russia. Coletta is distinguished from other procolophonoids by a complex tongue,and,groove suture between the anterolateral margin of the parietal and the posterolateral edge of the postfrontal, and by a transversely broad interpterygoid vacuity. The postfrontal in Coletta retains contact with the postorbital, as in basal taxa such as Owenetta, but it is restricted to the orbital margin, as in Procolophon and all other procolophonids. A phylogenetic analysis identifies Coletta as the sister taxon of the clade Procolophonidae. This phylogenetic position suggests that Procolophonoidea originated and diversified initially in Gondwana during the Permian, prior to Procolophonidae achieving a cosmopolitan distribution in the succeeding Triassic. [source] Khoratpithecus piriyai, a Late Miocene hominoid of ThailandAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 3 2006Yaowalak Chaimanee Abstract A Khoratpithecus piriyai lower jaw corresponds to a well-preserved Late Miocene hominoid fossil from northeastern Thailand. Its morphology and internal structure, using a microcomputed tomography scan, are described and compared to those of other known Miocene hominoids. It originated from fluviatile sand and gravel deposits of a large river, and was associated with many fossil tree trunks, wood fragments, and large vertebrate remains. A biochronological analysis by using associated mammal fauna gives an estimated geological age between 9,6 Ma. The flora indicates the occurrence of a riverine tropical forest and wide areas of grassland. K. piriyai displays many original characters, such as the great breadth of its anterior dentition, suggesting large incisors, large lower M3, a canine with a flat lingual wall, and symphysis structure. Several of its morphological derived characters are shared with the orangutan, indicating sister-group relationship with that extant ape. This relationship is additionally strongly supported by the absence of anterior digastric muscle scars. These shared derived characters are not present in Sivapithecus, Ankarapithecus, and Lufengpithecus, which are therefore considered more distant relatives to the orangutan than Khoratpithecus. The Middle Miocene K. chiangmuanensis is older, displays more primitive dental characters, and shares several dental characters with the Late Miocene form. It is therefore interpreted as its probable ancestor. But its less enlarged M3 and more wrinkled enamel may suggest an even closer phylogenetic position to orangutan ancestors, which cannot yet be supported because of the incomplete fossil record. Thus Khoratpithecus represents a new lineage of Southeast Asian hominoids, closely related to extant great ape ancestors. Am J Phys Anthropol 2006. © 2006 Wiley-Liss, Inc. [source] New strepsirrhine primate from the late Eocene of Peninsular Thailand (Krabi Basin)AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 4 2006Laurent Marivaux Abstract In this paper, we describe the newly discovered lower jaw of a primate from the late Eocene Krabi coal mine (Bang Mark pit) of Peninsular Thailand. We performed microtomographic examinations at the European Synchrotron Radiation Facility (ESRF, Grenoble, France) to analyze different morphological aspects of the jaw and teeth. Although partially preserved, this fossil mandible reveals a set of distinctive dental traits (e.g., double-rooted P2 and molarized P4) that allow us to describe a new stepsirrhine adapiform: Muangthanhinius siami, new genus and species. This taxon is somewhat atypical among Paleogene adapiforms, and more specialized than the sivaladapid adapiforms (hoanghoniines) that existed in Asia in the same epoch. In fact, Muangthanhinius shows a degree of dental specialization approximating that of some modern strepsirrhine lemuriforms, although it lacks the highly specialized anterior dentition characterizing this living primate group (canine + incisors forming a very procumbent toothcomb). In contrast, Muangthanhinius exhibits a large canine deeply anchored within the dentary that probably protruded high above the toothrow. Finally, despite the development of a molarized P4 as in Miocene sivaladapid sivaladapines, Muangthanhinius differs in molar morphology from this group, and the position of this new taxon within the Adapiformes remains indeterminate. Clarification of its phylogenetic position will require more morphological evidence than is currently available. Am J Phys Anthropol, 2006. © 2006 Wiley-Liss, Inc. [source] Molecular Phylogeny of Stentor (Ciliophora: Heterotrichea) Based on Small Subunit Ribosomal RNA SequencesTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 1 2007YING-CHUN GONG ABSTRACT. To determine the phylogenetic position of Stentor within the Class Heterotrichea, the complete small subunit rRNA genes of three Stentor species, namely Stentor polymorphus, Stentor coeruleus, and Stentor roeseli, were sequenced and used to construct phylogenetic trees using the maximum parsimony, neighbor joining, and Bayesian analysis. With all phylogenetic methods, the genus Stentor was monophyletic, with S. roeseli branching basally. [source] Of mites and millipedes: Recent progress in resolving the base of the arthropod treeBIOESSAYS, Issue 6 2010Jason Caravas Abstract Deep-level arthropod phylogeny has been in a state of upheaval ever since the emergence of molecular tree reconstruction approaches. While a consensus has settled in that hexapods are more closely related to crustaceans than to myriapods, the phylogenetic position of the latter has remained a matter of debate. Mitochondrial, nuclear, and genome-scale studies have proposed rejecting the long-standing superclade Mandibulata, which unites myriapods with insects and crustaceans, in favor of a clade that unites myriapods with chelicerates and has become known as Paradoxapoda or Myriochelata. Here we discuss the progress, problems, and prospects of arriving at the final arthropod tree. [source] | |||||||||||||