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Pathway System (pathway + system)

Distribution by Scientific Domains

Medical Sciences	66%

Selected Abstracts

Genes regulating molecular and cellular functions in noninfectious nonallergic rhinitis

ALLERGY, Issue 9 2009
L. O. Cardell
Background:, Chronic noninfectious, nonallergic rhinitis (NINAR) is a complex syndrome with a principally unknown pathophysiology. New technology has made it possible to examine differentially expressed genes and according to network theory, genes connected by their function that might have key roles in the disease. Methods:, Connectivity analysis was used to identify NINAR key genes. mRNA was extracted from nasal biopsies from 12 NINAR patients and 12 healthy volunteers. Microarrays were performed using Affymetrix chips with 54 613 genes. Data were analysed with the Ingenuity Pathway System for organization of genes into annotated biological functions and, thereafter, linking genes into networks due to their connectivity. The regulation of key genes was confirmed with reverse transcription-polymerase chain reaction (RT-PCR). Results:, In all, 43 genes were differentially expressed. The functional analysis showed that these genes were primarily involved in cellular movement, haematological system development and immune response. Merging these functions, 10 genes were found to be shared. Network analysis generated three networks and two of these ,shared genes' in key positions, c-fos and cell division cycle 42 (Cdc42). These genes were upregulated in both the array and the RT-PCR analysis. Conclusion:, Ten genes were found to be of pathophysiological interest for NINAR and of these, c-fos and Cdc42 seemed to be of specific interest due to their ability to interact with other genes of interest within this context. Although the role of c-fos and Cdc42 in upper airway inflammation remains unknown, they might be used as potential disease markers. [source]

H, feedback-control theory in biochemical systems

INTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL, Issue 1 2008
E. Gershon
Abstract In this paper we study the possible optimality of biochemical pathways in the H, sense. We start by presenting simple linearized models of single enzymatic reaction systems, where we apply classical and modern tools of feedback-control theory. We then apply the results obtained by our analysis to a linearly unbranched enzyme pathway system, where we explore the effect of a negative feedback loop internally exerted on the system by a self-product of the pathway. We then probe the sensitivity of the enzymatic system to variations in certain variables and we deal with the problem of assessing the optimality of the static-output feedback control, in the H, sense, inherent to the closed-loop system. In this point we demonstrate the applicability of our results via a theoretical example that provides an open-loop and closed-loop analysis of a four-block enzymatic system. We then apply the various tools we developed to the optimal analysis of the Threonine synthesis pathway which is regulated by three feedback loops. We demonstrate that this pathway is optimal in the H, sense, in the face of considerable uncertainties in the various enzyme concentrations of the pathway. Copyright © 2007 John Wiley & Sons, Ltd. [source]

MRI diffusion tensor tracking of a new amygdalo-fusiform and hippocampo-fusiform pathway system in humans

JOURNAL OF MAGNETIC RESONANCE IMAGING, Issue 6 2009
Charles D. Smith MD
Abstract Purpose To use MRI diffusion-tensor tracking (DTT) to test for the presence of unknown neuronal fiber pathways interconnecting the mid-fusiform cortex and anteromedial temporal lobe in humans. Such pathways are hypothesized to exist because these regions coactivate in functional MRI (fMRI) studies of emotion-valued faces and words, suggesting a functional link that could be mediated by neuronal connections. Materials and Methods A total of 15 normal human subjects were studied using unbiased DTT approaches designed for probing unknown pathways, including whole-brain seeding and large pathway-selection volumes. Several quality-control steps verified the results. Results Parallel amygdalo-fusiform and hippocampo-fusiform pathways were found in all subjects. The pathways begin/end at the mid-fusiform gyrus above the lateral occipitotemporal sulcus bilaterally. The superior pathway ends/begins at the superolateral amygdala. The inferior pathway crosses medially and ends/begins at the hippocampal head. The pathways are left-lateralized, with consistently larger cross-sectional area, higher anisotropy, and lower minimum eigenvalue (D-min) on the left, where D-min assesses intrinsic cross-fiber diffusivity independent of curvature. Conclusion A previously-undescribed pathway system interconnecting the mid-fusiform region with the amygdala/hippocampus has been revealed. This pathway system may be important for recognition, memory consolidation, and emotional modulation of face, object, and lexical information, which may be disrupted in conditions such as Alzheimer's disease. J. Magn. Reson. Imaging 2009. © 2009 Wiley-Liss, Inc. [source]

Characteristics of Oil Sources from the Chepaizi Swell, Junggar Basin, China

ACTA GEOLOGICA SINICA (ENGLISH EDITION), Issue 5 2010
LIU Luofu
Abstract: So far there has been no common opinion on oil source of the Chepaizi swell in the Junggar Basin. Therefore, it is difficult to determine the pathway system and trend of hydrocarbon migration, and this resulted in difficulties in study of oil-gas accumulation patterns. In this paper, study of nitrogen compounds distribution in oils from Chepaizi was carried out in order to classify source rocks of oils stored in different reservoirs in the study area. Then, migration characteristics of oils from the same source were investigated by using nitrogen compounds parameters. The results of nitrogen compounds in a group of oil/oil sand samples from the same source indicate that the oils trapped in the Chepaizi swell experienced an obvious vertical migration. With increasing migration distance, amounts and indices of carbazoles have a regular changing pattern (in a fine linear relationship). By using nitrogen compounds techniques, the analyzed oil/oil sand samples of Chepaizi can be classified into two groups. One is the samples stored in reservoir beds of the Cretaceous and Tertiary, and these oils came from mainly Jurassic source rock with a small amount of Cretaceous rock; the other is those stored in the Jurassic, Permian and Carboniferous beds, and they originated from the Permian source. In addition, a sample of oil from an upper Jurassic reservoir (Well Ka 6), which was generated from Jurassic coal source rock, has a totally different nitrogen compound distribution from those of the above-mentioned two groups of samples, which were generated from mudstone sources. Because of influence from fractionation of oil migration, amounts and ratios of nitrogen compounds with different structures and polarities change regularly with increasing migrating distance, and as a result the samples with the same source follow a good linear relationship in content and ratio, while the oil samples of different sources have obviously different nitrogen compound distribution owing to different organic matter types of their source rocks. These conclusions of oil source study are identical with those obtained by other geochemical bio-markers. Therefore, nitrogen compounds are of great significance in oil type classification and oil/source correlation. [source]