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Partitioning Analysis (partitioning + analysis)
Kinds of Partitioning Analysis Selected AbstractsCoagulation of Carboxylic Acid-Functionalized LatexesMACROMOLECULAR SYMPOSIA, Issue 1 2008Adélia Santos Abstract In the present work, the stability of particles produced by emulsion polymerization and stabilized by carboxylic acid groups was studied from turbidity measurements. To achieve this, a number of copolymerization runs was carried out under different reaction conditions, including the use of different carboxylic monomers. Partitioning analyses using conductimetric and potentiometric titrations were performed in order to assess the distribution of carboxylic monomers among the main phases of the produced latexes. Additionally, the stability and coalescence of particles were measured by turbidimetry in a diluted latex considering either the presence or not of the anionic surfactant sodium lauryl sulfate. Coalescence of particles was provoked in the latex samples at different temperatures by addition of an aliquot of a concentrated solution of electrolyte. The influence of surfactant, temperature and type of carboxylic acid group on the particle stability was investigated. [source] Testing alternative models for the conservation of koalas in fragmented rural,urban landscapesAUSTRAL ECOLOGY, Issue 4 2006CLIVE A. MCALPINE Abstract Predicting the various responses of different species to changes in landscape structure is a formidable challenge to landscape ecology. Based on expert knowledge and landscape ecological theory, we develop five competing a priori models for predicting the presence/absence of the Koala (Phascolarctos cinereus) in Noosa Shire, south-east Queensland (Australia). A priori predictions were nested within three levels of ecological organization: in situ (site level) habitat (<1 ha), patch level (100 ha) and landscape level (100,1000 ha). To test the models, Koala surveys and habitat surveys (n = 245) were conducted across the habitat mosaic. After taking into account tree species preferences, the patch and landscape context, and the neighbourhood effect of adjacent present sites, we applied logistic regression and hierarchical partitioning analyses to rank the alternative models and the explanatory variables. The strongest support was for a multilevel model, with Koala presence best predicted by the proportion of the landscape occupied by high quality habitat, the neighbourhood effect, the mean nearest neighbour distance between forest patches, the density of forest patches and the density of sealed roads. When tested against independent data (n = 105) using a receiver operator characteristic curve, the multilevel model performed moderately well. The study is consistent with recent assertions that habitat loss is the major driver of population decline, however, landscape configuration and roads have an important effect that needs to be incorporated into Koala conservation strategies. [source] Species,area relationships of red-listed species in old boreal forests: a large-scale data analysisDIVERSITY AND DISTRIBUTIONS, Issue 5 2009Olli-Pekka Tikkanen Abstract Aim, Species,area relationships are often applied, but not generally approved, to guide practical conservation planning. The specific species group analysed may affect their applicability. We asked if species,area curves constructed from extensive databases of various sectors of natural resource administration can provide insights into large-scale conservation of boreal forest biodiversity if the analyses are restricted only to red-listed species. Location, Finland, northern Europe. Methods, Our data included 12,645 records of 219 red-listed Coleoptera and Fungi from the whole of Finland. The forest data also covered the entire country, 202,761 km2. The units of species,area analyses were 224 municipalities where the red-listed forest species have been observed. We performed a hierarchical partitioning analysis to reveal the relative importance of different potential explanatory variables. Based on the results, for all red-listed species, species associated with coniferous trees and for Fungi, the area of economically over-aged forests explained the best the variation in data. For species associated with deciduous trees and Coleoptera, the forest area explained better variation in data than the area of old forests. In the subsequent log,log species,area regression analyses, we used the best variables as the explanatory variable for each species group. Results, There was a strong relationship between the number of all red-listed species and the area of old forests remaining, with a z -value of 0.45. The area explained better the number of species associated with conifer trees and Fungi than the number of species associated with deciduous trees and Coleoptera. Main conclusions, The high z -values of species,area curves indicate that the remaining old-growth patches constitute a real archipelago for the conifer-associated red-listed species, since lower values had been expected if the surrounding habitat matrix were a suitable habitat for the species analysed. [source] The contributions of topoclimate and land cover to species distributions and abundance: fine-resolution tests for a mountain butterfly faunaGLOBAL ECOLOGY, Issue 2 2010Javier Gutiérrez Illán ABSTRACT Aim, Models relating species distributions to climate or habitat are widely used to predict the effects of global change on biodiversity. Most such approaches assume that climate governs coarse-scale species ranges, whereas habitat limits fine-scale distributions. We tested the influence of topoclimate and land cover on butterfly distributions and abundance in a mountain range, where climate may vary as markedly at a fine scale as land cover. Location, Sierra de Guadarrama (Spain, southern Europe) Methods, We sampled the butterfly fauna of 180 locations (89 in 2004, 91 in 2005) in a 10,800 km2 region, and derived generalized linear models (GLMs) for species occurrence and abundance based on topoclimatic (elevation and insolation) or habitat (land cover, geology and hydrology) variables sampled at 100-m resolution using GIS. Models for each year were tested against independent data from the alternate year, using the area under the receiver operating characteristic curve (AUC) (distribution) or Spearman's rank correlation coefficient (rs) (abundance). Results, In independent model tests, 74% of occurrence models achieved AUCs of > 0.7, and 85% of abundance models were significantly related to observed abundance. Topoclimatic models outperformed models based purely on land cover in 72% of occurrence models and 66% of abundance models. Including both types of variables often explained most variation in model calibration, but did not significantly improve model cross-validation relative to topoclimatic models. Hierarchical partitioning analysis confirmed the overriding effect of topoclimatic factors on species distributions, with the exception of several species for which the importance of land cover was confirmed. Main conclusions, Topoclimatic factors may dominate fine-resolution species distributions in mountain ranges where climate conditions vary markedly over short distances and large areas of natural habitat remain. Climate change is likely to be a key driver of species distributions in such systems and could have important effects on biodiversity. However, continued habitat protection may be vital to facilitate range shifts in response to climate change. [source] External validation of a risk group defined by recursive partitioning analysis in patients with head and neck carcinoma treated with surgery and postoperative radiotherapyHEAD & NECK: JOURNAL FOR THE SCIENCES & SPECIALTIES OF THE HEAD AND NECK, Issue 9 2007Xavier León MD Abstract Background: Several clinical trials have proved that concurrent chemoradiotherapy is more efficacious than radiotherapy alone among high-risk patients with head and neck squamous cell carcinoma (HNSCC) who undergo surgery. A risk-group classification defined according to a recursive partitioning analysis (RPA) for these patients has been recently proposed. The objective of the present study was to carry out an external validation of this RPA-derived classification system. Methods: A retrospective study of 442 HNSCC patients treated with surgery and postoperative radiotherapy was conducted. The external validity of the RPA-derived classification system was assessed, and its ability to stage patients and to predict locoregional control of the disease was compared with the TNM system. Results: The RPA-derived classification system succeeded in obtaining a monotonic prognosis gradient in locoregional control of the disease with increasing stage, and achieved greater differences in survival between stages than the TNM and pTNM classifications. Besides, the RPA method had a better homogeneity of the categories included in each stage, and in the heterogeneity between stages. Conclusions: The RPA-derived classification system allowed for the clear definition of prognostic groups in surgically treated HNSCC patients, improving the prognostic capacity of the TNM and pTNM classifications. The RPA-derived classification system is a useful tool in the definition of patients who, given a poor prognosis, should be considered candidates to adjuvant chemoradiotherapy. © 2007 Wiley Periodicals, Inc. Head Neck, 2007 [source] Molecular determinants of irinotecan efficacyINTERNATIONAL JOURNAL OF CANCER, Issue 10 2006Daniel Vallböhmer Abstract Molecular markers predicting the efficacy of CPT-11 based chemotherapies in patients with colorectal cancer (CRC) are unknown. Therefore, we investigated whether mRNA levels of drug targets (Topoisomerase I, TS), enzymes involved in 5-FU metabolism (DPD), in angiogenesis (EGFR, IL-8, VEGF) and in DNA-repair/drug detoxification (ERCC1, GST-P1) are associated with the clinical outcome of patients with CRC treated with first-line CPT-11 based chemotherapy. Thirty three patients with metastatic CRC were included in the study. Intratumoral gene expression levels were assessed from paraffin-embedded tissue samples, using laser capture microdissection and quantitative Real-Time PCR. Complete response was observed in 1 patient, partial response in 12 patients, stable disease in 13 patients and progressive disease in 6 patients. Response was inevaluable for 1 patient. Patients with complete response or partial response were classified as responders, while patients with stable disease or progressive disease were classified as nonresponders. High intratumoral mRNA levels of EGFR, ERCC1 and GSPT-P1 were each significantly associated with response to CPT-11 based chemotherapy. Recursive partitioning analysis showed that mRNA levels of EGFR and ERCC1 are primarily responsible for delineating responders from nonresponders. Also, the combination of high intratumoral gene expression levels of both EGFR and ERCC1 was significantly associated with progression-free survival. The mRNA levels of EGFR had a significant correlation with expression levels of ERCC1, GST-P1 and VEGF. This small retrospective study suggests that gene expression levels of EGFR, ERCC1 and GST-P1 may be useful in predicting the clinical outcome of patients with metastatic CRC treated with first-line CPT-11 based chemotherapy. © 2006 Wiley-Liss, Inc. [source] Structure of Macroinvertebrate Communities in Relation to Environmental Variables in a Subtropical Asian River SystemINTERNATIONAL REVIEW OF HYDROBIOLOGY, Issue 1 2010Xiao-Ming Jiang Abstract Subtropical Asian rivers support a highly diverse array of benthic macroinvertebrates. Yet, their biodiversity and functionality has been poorly investigated. We choose the Chishui River system, one of the largest un-dammed, first level branches upstream of the Yangtze River, China, to: 1) determine the spatial pattern of macroinvertebrate diversity and community structure, and 2) examine the influence of variables at local habitat and basin scales on the distribution of macroinvertebrate communities. Samples were collected from 43 sites in spring of 2007. After Canonical Correspondence Analysis, two basin and five habitat variables were found to be significant predictors of the macroinvertebrate community structure. Variance partitioning analysis showed that habitat physical variables had a greater influence than other environmental variables in macroinvertebrate community, which suggested that preserving habitat, especially upstream, should be strongly considered in biological conservation. (© 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Identification and significance of sources of spatial variation in grapevine water statusAUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH, Issue 1 2010J.A. TAYLOR Abstract Background and Aims:, Water stress in grapevines is directly linked to grape quality. Differential vine water management should therefore be strongly linked to the water stress in the vine. To do this, an understanding of the dominant drivers and indicators of vine water status are needed from a sub-block to whole vineyard level. This understanding will help generate effective vine water status models for variable rate irrigation systems. Methods and Results:, A vineyard in the south of France was sampled for pre-dawn leaf water potential (,PD) at several dates during the growing season for two consecutive years. Sampling was stratified by soil types and relative within-block vegetative expression. A recursive partitioning analysis identified that cultivar had a dominant effect at low water stress, while vegetative expression and then soil unit effects became dominant as water restriction increased. Variance in ,PD was calculated at difference scales (plant, site, block and vineyard) and Smith's heterogeneity law was used to evaluate the scalar nature of ,PD variance. Spatial heterogeneity increased as the season and water restriction increased. Conclusion:, Variance in ,PD changed temporally through a season and the dominant drivers/indicators also changed. The opportunity to spatially manage water stress (irrigation) increased as water restriction increased. Significance of the Study:, Managing vine water stress helps optimise production and a ,PD model would be a useful addition to a viticulture decision support system. This study identified how the variance in ,PD evolved during a season and the best ancillary indicators of ,PD for spatial and temporal modelling. [source] Whole-brain radiotherapy versus stereotactic radiosurgery for patients in recursive partitioning analysis classes 1 and 2 with 1 to 3 brain metastasesCANCER, Issue 10 2007Dirk Rades MD Abstract BACKGROUND. The authors investigated whether stereotactic radiosurgery (SRS) alone improved outcomes for patients in recursive partitioning analysis (RPA) Classes 1 and 2 who had 1 to 3 brain metastases compared with whole-brain radiotherapy (WBRT). METHODS. Data regarding 186 patients in RPA Classes 1 and 2 who had 1 to 3 brain metastases and who received either 30 to 40 grays (Gy) of WBRT (n = 91 patients) or 18 to 25 Gy SRS (n = 95 patients) were analyzed retrospectively. Eight other potential prognostic factors were evaluated regarding overall survival (OS), entire brain control (BC), local control (LC) of treated metastases, and brain control distant from treated metastases (distant control [DC]): Those 8 factors were age, sex, performance status, tumor type, number of brain metastases, extracranial metastases, RPA class, and interval from tumor diagnosis to radiotherapy. RESULTS. On multivariate analysis of OS, age ( risk ratio [RR], 1.51; P = .024), Karnofsky performance status (KPS) (RR, 1.98; P = .002), and extracranial metastases (RR, 2.26; P < .001) were significant, whereas the radiation regimen was not significant (P = .89). On multivariate analysis of BC, only the radiation regimen (RR, 1.33; P = .003) was found to be significant. On multivariate analysis of LC, radiation regimen (RR, 1.63; P < .001) and sex (RR, 1.62; P = .022) were significant. On multivariate analysis of DC, KPS (RR, 1.85; P = .049) and extracranial metastases (RR, 1.69; P = .047) were significant. The radiation regimen was not found to be significant even on univariate analysis (P = .80). In RPA class subgroup analyses, BC and LC were better after SRS than WBRT for patients in RPA Classes 1 and 2, whereas OS and DC did not differ significantly. CONCLUSIONS. For patients in RPA Classes 1 and 2 who had 1 to 3 brain metastases, SRS alone was associated with improved BC and LC compared with 30 to 40 Gy WBRT, whereas OS and DC were not significantly different. Similar results were observed in separate subgroup analyses of patients in RPA Class 1 and RPA Class 2. Cancer 2007. © 2007 American Cancer Society. [source] A boost in addition to whole-brain radiotherapy improves patient outcome after resection of 1 or 2 brain metastases in recursive partitioning analysis class 1 and 2 patientsCANCER, Issue 7 2007Dirk Rades MD Abstract BACKGROUND. The current study was conducted to compare 2 treatment regimens including surgical resection and whole-brain radiotherapy (WBRT) for patients with 1 to 2 brain metastases. METHODS. A total of 201 patients with recursive partitioning analysis (RPA) class 1 to 2 disease with 1 to 2 resectable brain metastases were analyzed retrospectively. Patients underwent either resection of the metastases plus WBRT with 10 fractions of 3 grays (Gy) each or 20 fractions of 2 Gy each (99 patients; Group A) or the same treatment plus a WBRT boost to the metastatic site (10 fractions of 3 Gy each plus 5 fractions of 3 Gy each or 20 fractions of 2 Gy each plus 5 fractions of 2 Gy each) (102 patients; Group B). Eight other potential prognostic factors were evaluated with regard to overall survival (OS), brain control (BC), and local control of resected metastases (LC): age, gender, Karnofsky performance status, extent of surgical resection, tumor type, extracranial metastases, RPA class, and interval from tumor diagnosis to WBRT. RESULTS. Group B patients had better 1-year OS (66% vs 41%; P < .001). On multivariate analysis of OS, treatment regimen (relative risk [RR] of 1.94; P < .001), extent of surgical resection (RR of 1.80; P = .001), and interval from tumor diagnosis to WBRT (RR of 1.62; P = .010) were found to be statistically significant. On multivariate analysis of BC, treatment regimen (RR of 2.15; P = .002), extent of surgical resection (RR of 2.78; P < .001), and interval from tumor diagnosis to WBRT (RR of 1.52; P = .034) were found to be statistically significant. On multivariate analysis of LC, treatment regimen (RR of 2.31; P = .002) and extent of surgical resection (RR of 3.79; P < .001) were found to be statistically significant. On RPA class subgroup analyses, outcome was found to be significantly better with a WBRT boost in both RPA class 1 and class 2 patients. A WBRT boost resulted in better outcome after both complete and incomplete surgical resection. However, the results concerning BC and LC were not found to be statistically significant if surgical resection was incomplete. CONCLUSIONS. After surgical resection of 1 to 2 brain metastases, a boost of 10 to 15 Gy in addition to WBRT was found to improve outcome. After incomplete surgical resection, further dose escalation to the metastatic site may be considered. Cancer 2007. © 2007 American Cancer Society. [source] Survival by radiation therapy oncology group recursive partitioning analysis class and treatment modality in patients with brain metastases from malignant melanomaCANCER, Issue 8 2002A retrospective study Abstract BACKGROUND In a population of patients with brain metastases from melanoma, the authors sought to determine whether various therapies provided any benefit at all, whether local therapy was better than whole brain radiotherapy (WBRT), and whether combined local therapy and WBRT provided any advantage over local therapy alone. They also analyzed survival according to a Radiation Therapy Oncology Group (RTOG) recursive partitioning analysis (RPA) to determine how well the RTOG RPA classes predicted survival in this patient population and whether treatments varied in effectiveness from category to category. METHODS A total of 74 patients with brain metastases from melanoma were treated at The Cleveland Clinic Foundation between 1984 and 1998. For this study, the authors reviewed patient charts and confirmed survival status. Survival was compared by treatment modality (surgical resection, WBRT, stereotactic radiosurgery, or WBRT combined with local therapy). Survival also was compared according to the RTOG RPA prognostic classes (Class 1, Class 2, or Class 3), which has not been validated previously in patients with malignant melanoma. RESULTS The median survival was 5.5 months for all patients. Survival varied significantly by RTOG prognostic class; The median survival was 10.5 months (range, 2.2,99.2 months) for patients in Class 1, 5.9 months (range, 0.2,43.9 months) for patients in Class 2, and 1.8 months (range, 0.1,6.9 months) for patients in Class 3 (P < 0.0001). Survival analysis showed that combined treatment offered significantly better survival (P < 0.0001; combined vs. other). The median survival was 8.8 months (range, 1.8,99.2 months) for the combined therapy group, 4.8 months (range, 1.2,27.8 months) for the local therapy alone group, 2.3 months (range, 0.2,9.6 months) for the WBRT alone group, and 1.1 months (0.1,3.0 months) for the group that received no therapy. CONCLUSIONS Adding WBRT to local therapy may improve survival in this group of patients: Combined therapy was superior to WBRT alone. The RPA classification scheme likely has prognostic value for patients with brain metastases from malignant melanoma. Prospective studies are required to overcome selection bias and confirm these results. Cancer 2002;94:2265,72. © 2002 American Cancer Society. DOI 10.1002/cncr.10426 [source] The Stereospecific Ligand Exchange at a Pseudo-Benzylic T -4 Iridium Centre in Planar-Chiral Cycloiridium (,6 -Arene)tricarbonylchromium ComplexesCHEMISTRY - A EUROPEAN JOURNAL, Issue 41 2009Jean-Pierre Djukic Dr. Abstract The stereospecificity of ligand exchange at the IrIII centre of a cycloiridium arenetricarbonylchromium complex has been established experimentally by various analytical methods as well as by X-ray diffraction structural analysis and computational investigations. Two new cases of phenyl and methyl iridium(III) complexes have been prepared by reaction of (,)-chlorido{2-[(tricarbonyl)(,6 -phenylene-,C1,)chromium(0)]pyridine-,N}(pentamethylcyclopentadienyl)iridium(III) with PhMgBr and MeMgBr. The determining influence of electrostatic repulsion has been established by means of density functional theory at the Becke,Perdew/TZP(ZORA) level by using, among other means, energy partitioning analysis. It is also shown that the Cr(CO)3 fragment is likely to ease the ionic cleavage of the IrCl bond in chlorido cycloiridium tricarbonylchromium complexes in a way similar to that already established for the solvolysis of benzyl halide complexes, that is, through a direct interaction of the Cr0 centre with the cationic IrIII centre. [source] | ||||||||||||||||