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Pairwise Combinations (pairwise + combination)
Selected AbstractsCharacterization of new microsatellite markers in mung bean, Vigna radiata (L.)MOLECULAR ECOLOGY RESOURCES, Issue 4 2006JAE-GYUN GWAG Abstract The present work reports the isolation and characterization of new polymorphic microsatellites in mung bean (Vigna radiata L.). Of 93 designed primer pairs, seven were found to amplify polymorphic microsatellite loci, which were then characterized using 34 mung bean accessions. The number of alleles ranged from two to five alleles per locus with an average of three alleles. Observed and expected heterozygosity values ranged from 0 to 0.088 and from 0.275 to 0.683, respectively. All seven loci showed significant deviations from Hardy,Weinberg equilibrium, whereas only one pairwise combination (GBssr-MB77 and GBssr-MB91) exhibited significant departure from linkage disequilibrium. These newly developed markers are currently being utilized for diversity assessment within the mung bean germplasm collection of the Korean Gene Bank. [source] Poor phenotypic integration of blue mussel inducible defenses in environments with multiple predatorsOIKOS, Issue 5 2009Aaren S. Freeman Aquatic prey encounter an array of threat cues from multiple predators and killed conspecifics, yet the vast majority of induced defenses are investigated using cues from single predator species. In most cases, it is unclear if odors from multiple predators will disrupt defenses observed in single-predator induction experiments. We experimentally compared the inducible defenses of the common marine mussel Mytilus edulis to waterborne odor from pairwise combinations of three predators representing two attack strategies. Predators included the sea star, Asterias vulgaris (=Asteriasrubens), and the crabs Carcinus maenas and Cancer irroratus. The mussels increased adductor muscle mass in response to cues from unfed Asterias (a predatory seastar that pulls mussel shells open) and increased shell thickness in response to unfed Carcinus, a predatory crab that crushes or peels shells. However, the mussels did not express either predator specific response when exposed to the combined cues of Asterias and Carcinus, and mussels did not increase shell thickness when exposed to cues from Cancer alone or any pairwise combination of the three predators. Shell closure or ,clamming up' did not occur in response to any predator combination. These results suggest that predator-specific responses to the Asterias and Carcinus are poorly integrated and cannot be expressed simultaneously. Simultaneous cues from multiple predators affect the integration of predator specific defenses and predator odors from functionally similar predators do not necessarily initiate similar defenses. Ultimately, the degree that prey can integrate potentially disparate defenses in a multiple predator environment may have ecological ramifications and represent a seldom explored facet of the evolution of inducible defenses. [source] Predicting competition coefficients for plant mixtures: reciprocity, transitivity and correlations with life-history traitsECOLOGY LETTERS, Issue 4 2001R.P. Freckleton There are few empirical or theoretical predictions of how per capita or per individual competition coefficients for pairs of plant species should relate to each other. In contrast, there are a considerable number of general hypotheses that predict competitive ability as a function of a range of ecological traits, together with a suite of increasingly sophisticated models for competitive interactions between plant species. We re-analyse a data set on competition between all pairwise combinations of seven species and show that competition coefficients relate strongly to differences between the maximum sizes, root allocation, emergence time and seed size of species. Regressions suggest that the best predictor of competition coefficients is the difference in the maximum size of species and that correlations of the other traits with the competition coefficients occur through effects on the maximum size. We also explore the patterns of association between coefficients across the competition matrix. We find significant evidence for coefficient reciprocity (inverse relationships between the interspecific coefficients for species pairs) and transitivity (numerically predictable hierarchies of competition between species) across competition matrices. These results therefore suggest simple null models for plant community structure when there is competition for resources. [source] Influence of environmental factors on the growth and interactions between salt marsh plants: effects of salinity, sediment and waterloggingJOURNAL OF ECOLOGY, Issue 3 2000Jonathan M. Huckle Summary 1,Artificial environmental gradients were established in a series of pot experiments to investigate the effect of salinity, sediment type and waterlogging on the growth, and interactions between Spartina anglica and Puccinellia maritima. In each experiment, one environmental variable was manipulated and plants grown in pairwise combinations to examine the effect of the environmental factor on the intensity of intra- and interspecific interactions, quantified using the Relative Neighbour Effect (RNE) index. 2,Puccinellia was found to exert an asymmetric, one-way competitive dominance above ground over Spartina in experiments where gradients of sediment type and waterlogging were established. The intensity of the competition was highest in conditions with the least abiotic stress and lower or non-existent where stress was increased. 3,The intensity of the above-ground competition was greatest in loam and least in sand sediments. Reduction in competitive intensity in sand was accompanied by an increase in below-ground Spartina biomass and it is suggested that the production of rhizomes is a potential mechanism by which this species can expand vegetatively into areas without competition. 4,Interspecific competition on Spartina from Puccinellia also varied in intensity in the waterlogging experiment, being more intense in non-immersed treatments, where abiotic stress was reduced. 5,The competitive dominance of Puccinellia and the competition avoidance mechanism shown by Spartina in these experiments help to explain the successional interactions between the species along environmental gradients in natural salt marsh communities. [source] Poor phenotypic integration of blue mussel inducible defenses in environments with multiple predatorsOIKOS, Issue 5 2009Aaren S. Freeman Aquatic prey encounter an array of threat cues from multiple predators and killed conspecifics, yet the vast majority of induced defenses are investigated using cues from single predator species. In most cases, it is unclear if odors from multiple predators will disrupt defenses observed in single-predator induction experiments. We experimentally compared the inducible defenses of the common marine mussel Mytilus edulis to waterborne odor from pairwise combinations of three predators representing two attack strategies. Predators included the sea star, Asterias vulgaris (=Asteriasrubens), and the crabs Carcinus maenas and Cancer irroratus. The mussels increased adductor muscle mass in response to cues from unfed Asterias (a predatory seastar that pulls mussel shells open) and increased shell thickness in response to unfed Carcinus, a predatory crab that crushes or peels shells. However, the mussels did not express either predator specific response when exposed to the combined cues of Asterias and Carcinus, and mussels did not increase shell thickness when exposed to cues from Cancer alone or any pairwise combination of the three predators. Shell closure or ,clamming up' did not occur in response to any predator combination. These results suggest that predator-specific responses to the Asterias and Carcinus are poorly integrated and cannot be expressed simultaneously. Simultaneous cues from multiple predators affect the integration of predator specific defenses and predator odors from functionally similar predators do not necessarily initiate similar defenses. Ultimately, the degree that prey can integrate potentially disparate defenses in a multiple predator environment may have ecological ramifications and represent a seldom explored facet of the evolution of inducible defenses. [source] Multiple human papilloma virus types in cervical infections: competition or synergy?APMIS, Issue 5 2010NINA MEJLHEDE Mejlhede N, Pedersen BV, Frisch M, Fomsgaard A. Multiple human papilloma virus types in cervical infections: competition or synergy? APMIS 2010; 118: 346,52. Coinfection with multiple human papilloma virus (HPV) types is common in cervical HPV infection. To evaluate if infections with different HPV types occur independently, we examined 3558 women above 15 years of age suspected of cervical HPV infection. Among them, 1842 (52%) women were HPV negative and 1716 (48%) were HPV positive as analysed by a PCR-based commercial microarray assay for mucosal types. Of the HPV-positive samples, 824 (48%) had single infections, while 892 (52%) had multiple infections. Observed numbers of concurrent HPV types differed from expected numbers under the assumption of independence between infections by the various HPV types. Significant positive associations were observed for 16 pairs of HPV types in statistical analysis accounting for mass significance. Significant negative associations were also found, i.e. women with HPV-16 infection had 0.4 times the odds of having HPV-51 compared with women not infected with HPV-16. HPV-16 was the only type with odds ratios <1 for all pairwise combinations. While our findings of statistically significant coexistence do not prove biological dependence among HPV types, they do suggest that infections with some HPV types may depend on the existence of certain other HPV types. Any interaction between coexisting HPV types could either decrease or increase the efficacy of current HPV vaccines that offer mainly type-specific protection, depending on whether the types vaccinated against compete with other HPV types or not. [source] Classroom experiments on the effects of different noise sources and sound levels on long-term recall and recognition in childrenAPPLIED COGNITIVE PSYCHOLOGY, Issue 8 2003Staffan Hygge A total of 1358 children aged 12,14 years participated in ten noise experiments in their ordinary classrooms and were tested for recall and recognition of a text exactly one week later. Single and combined noise sources were presented for 15 min at 66 dBA Leq (equivalent noise level). Single source presentations of aircraft and road traffic noise were also presented at 55 dBA Leq. Data were analysed between subjects since the first within-subjects analysis revealed a noise after-effect or a asymmetric transfer effect. Overall, there was a strong noise effect on recall, and a smaller, but significant effect on recognition. In the single-source studies, aircraft and road traffic noise impaired recall at both noise levels. Train noise and verbal noise did not affect recognition or recall. Some of the pairwise combinations of aircraft noise with train or road traffic, with one or the other as the dominant source, interfered with recall and recognition. Item difficulty, item position and ability did not interact with the noise effect. Arousal, distraction, perceived effort, and perceived difficulty in reading and learning did not mediate the effects on recall and recognition. Copyright © 2003 John Wiley & Sons, Ltd. [source] Specific APO E genotypes in combination with the ACE D/D or MTHFR 677TT mutation yield an independent genetic risk of leukoaraiosisACTA NEUROLOGICA SCANDINAVICA, Issue 3 2004Z. Szolnoki Objective , Ischaemic demyelination of the white matter of the brain is a frequent clinical entity. In the neuroimaging terms, it is referred to as leukoaraiosis. We earlier found that the co-occurrence of the homozygous methylenetetrahydrofolate reductase (MTHFR) 677TT and angiotensin-converting enzyme D/D (ACE D/D) genotypes yielded a highly significant moderate risk of leukoaraiosis. On the assumption of further genetic interactions, we have now investigated whether the different apolipoprotein E (APO E) genotypes, in pairwise combinations with the MTHFR 677TT or ACE D/D mutation, could lead to an increased risk of leukoaraiosis. Material and methods , We analysed the occurrence of the APO E genotypes in pairwise combinations with the MTHFR 677TT or ACE D/D mutation in 315 consecutive Caucasian patients with leukoaraiosis. A total of 646 neuroimaging-free subjects acted as a control group. Results , The APO E 2/2 and 2/3 or APO E 4/4 and 4/3 genotypes in combination with the MTHFR 677TT or ACE D/D mutation exhibited independent genetic risks of leukoaraiosis. Conclusion , The interactions of certain unfavourable genetic mutations can contribute to the evolution of leukoaraiosis. [source] Generation of functionally mature dendritic cells from elutriated monocytes using polyinosinic : polycytidylic acid and soluble CD40 ligand for clinical applicationCLINICAL & EXPERIMENTAL IMMUNOLOGY, Issue 3 2008S. Kim Summary Despite the increasing use of dendritic cell (DC) vaccination in clinical trials, optimal conditions for the generation of functionally mature DCs remain to be established. The current standard DC maturation protocol for clinical trials has been used as an inflammatory cytokine cocktail [tumour necrosis factor (TNF)-,, interleukin (IL)-1,, IL-6 and prostaglandin E2], but this cocktail induced insufficient maturation of DCs derived from elutriated monocytes when cultured in X-VIVO 15. The aim of this study was to define effective combinations of stimulators for generating functionally mature DCs from elutriated monocytes under current good manufacturing practice conditions. We compared the functional capacity of DCs in response to all possible pairwise combinations of four different classes of stimuli: TNF-,, peptidoglycan, polyinosinic : polycytidylic acid [poly(I:C)] and soluble CD40 ligand (CD40L). Maturation status of DCs stimulated with combination of four stimuli was similar to that of the cytokine cocktail as assessed by the cell surface phenotype. However, only the combination of poly(I:C) + CD40L induced complete functional activation of the whole DC population, assessing IL-12p70 production, allostimulatory activity, migratory response to CCL19 and T helper 1-polarizing capacity. Thus, the protocol based on the combination of poly(I:C) and CD40L is more effective for the induction of clinical-grade DCs from elutriated monocytes than the standard cytokine cocktail. [source] | |||||||||||||