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Terms modified by Outer Selected AbstractsStructure,activity relationship of an antibacterial peptide, maculatin 1.1, from the skin glands of the tree frog, Litoria genimaculataJOURNAL OF PEPTIDE SCIENCE, Issue 7 2004Takuro Niidome Abstract Maculatin 1.1 (Mac) is a cationic antibacterial peptide isolated from the dorsal glands of the tree frog, Litoria genimaculata, and has a sequence of GLFGVLAKVAAHVVPAIAEHF-NH2. A short peptide lacking the N -terminal two residues of Mac was reported to have no activity. To investigate the structure,activity relationship in detail, several analogs and related short peptides of Mac were synthesized. CD measurement showed that all the peptides took more or less an ,-helical structure in the presence of anionic lipid vesicles. Analogs which are more basic than Mac had strong antibacterial and hemolytic activities, while short peptides lacking one or two terminal residues exhibited weak or no activity. Outer and inner membrane permeabilization activities of the peptides were also reduced with shortening of the peptide chain. These results indicate that the entire chain length of Mac is necessary for full activity, and the basicity of the peptides greatly affects the activity. Copyright © 2004 European Peptide Society and John Wiley & Sons, Ltd. [source] The Inner and the Outer: Kant's ,Refutation' ReconstructedRATIO, Issue 2 2000Robert Hanna In Skeptical idealism says that possibly nothing exists outside my own conscious mental states. Purported refutations of skeptical idealism , whether Descartes's, Locke's, Reid's, Kant's, Moore's, Putnam's, or Burge's , are philosophically scandalous: they have convinced no one. I argue (1) that what is wrong with the failed refutations is that they have attempted to prove the wrong thing , i.e., that necessarily I have veridical perceptions of distal material objects in space, and (2) that a charitable reconstruction of Kant's ,Refutation of Idealism' in fact provides a sound refutation of skeptical idealism. [source] Crystal structures of two acridinedione derivativesCRYSTAL RESEARCH AND TECHNOLOGY, Issue 3 2005K. Palani Abstract The crystal structures of two acridinedione derivatives, namely 10-(3,4-Dichloro-5-hydroxyphenyl)-3,4,6,7,9,10-hexahydro-1,8(2H, 5H) acridinedione (DHHA, CCDC 206440) and 10-(3,5-Dihydroxy-4-nitrophenyl)-3,4,6,7,9,10-hexahydro-1,8(2H, 5H) acridinedione (DHNA, CCDC206441) are reported here. Both the structures were solved by direct methods and refined by full-matrix least-squares procedures to final R- values of 0.073 and 0.076 respectively. In both the crystal structures, the central pyridine ring in the acridinedione moiety tends to be planar while the outer two rings adopt half-chair (sofa) conformation. The buckling angles 2.2(2)° and 11.0(1)° for DHHA and DHNA show the degree of planarity of the acridinedione moiety. The C-H,O types of hydrogen bonds help to stabilize the molecules in the unit cell in addition to van der Waals forces. (© 2005 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Osteoderm morphology in recent and fossil euphractine xenarthransACTA ZOOLOGICA, Issue 4 2009C. M. Krmpotic Abstract The presence of osteoderms within the integument, forming a carapace, is one of the most distinctive features of armadillos with the external morphology of these elements forming the basis of most systematic schemes. This is especially true for fossil taxa, where these elements are most frequent in the palaeontological record. A detailed study of osteoderms from the cephalic shield and different regions of the dorsal armour of Chaetophractus villosus (Euphractinae, Xenarthra) was made and compared to those of the extant genus Dasypus (Dasypodinae, Xenarthra), and the extinct genus ,Eutatus. Three distinct histological zones were recognized: outer and inner zones are thin, formed by regular compact bone, the middle zone is thicker, with large cavities that contain mainly adipose tissue, hair follicles, and sweat and sebaceous glands. The internal structure of ,Eutatus (also a member of Euphractinae) osteoderms is close to that of C. villosus, consistent with the notion that these taxa are phylogenetically closely related. In contrast, Dasypus shows marked differences. Dasypus shows hair follicles associated with both gland types (sweat and sebaceous) and connected to foramina on the external surface. Although not observed in adult C. villosus, it has been documented during embryonic development, only to atrophy later in ontogeny. Furthermore, the presence of red bone marrow is rare in C. villosus, but widespread in Dasypus novemcinctus osteoderms. These results suggest an early split of both subfamilies and support the hypothesis that the Euphractinae are more derived than the Dasypodinae. [source] Organization and mode of secretion of the granular prismatic microstructure of Entodesma navicula (Bivalvia: Mollusca)ACTA ZOOLOGICA, Issue 2 2009Elizabeth M. Harper The term homogeneous has been applied to molluscan microstructures that lack a readily discernible microstructure and as a result, it has become rather a ,dustbin' term, covering a multitude of unrelated finely crystalline textures. Here we investigate in detail the outer ,homogeneous' layer of the lyonsiid bivalve Entodesma navicula. The apparently equigranular crystals (up to 10 µm) are, in fact, short prisms which grow in a dense organic matrix with their c -axes and fibre axes coincident, perpendicular to the growth surface. These prisms are distinct from the aragonitic prisms grown by other bivalves in both their morphology and their mode of growth and so we propose the term granular prismatic microstructure. The organic content of granular prisms (7.4%) is the highest yet recorded for any molluscan microstructure and it is apparent that the short prisms have grown within a gel-filled space. Although this high organic content is likely to make the microstructure metabolically expensive to produce, it has the benefit of making the valves very flexible. This may be advantageous in the intertidal zone inhabited by E. navicula by allowing a tight seal between the valves. [source] The biology and functional morphology of Arca noae (Bivalvia: Arcidae) from the Adriatic Sea, Croatia, with a discussion on the evolution of the bivalve mantle marginACTA ZOOLOGICA, Issue 1 2008Brian Morton Abstract In the Croatian Adriatic, Arca noae occurs from the low intertidal to a depth of 60 m; it can live for > 15 years and is either solitary or forms byssally attached clumps with Modiolus barbatus. The shell is anteriorly foreshortened and posteriorly elongate. The major inhalant flow is from the posterior although a remnant anterior stream is retained. There are no anterior but huge posterior byssal retractor muscles and both anterior and posterior pedal retractors. The ctenidia are of Type B(1a) and the ctenidial,labial palp junction is Category 3. The ctenidia collect, filter and undertake the primary sorting of potential food in the inhalant water. The labial palps are small with simple re-sorting tracks on the ridges of their inner surfaces. The ciliary currents of the mantle cavity appear largely concerned with the rejection of particulate material. The mantle margin comprises an outer and an (either) inner or middle fold. The outer fold is divided into outer and inner components that secrete the shell and are photo-sensory, respectively. The latter bears a large number of pallial eyes, especially posteriorly. The inner/middle mantle fold of A. noae, possibly representative of simpler, more primitive conditions, may have differentiated into distinct folds in other recent representatives of the Bivalvia. [source] Flexible Ultrathin PolyDVB/EVB Composite Membranes for the Optimization of a Whole Blood Glucose SensorELECTROANALYSIS, Issue 4 2007Kerry Bridge Abstract An ultrathin composite membrane has been developed as the outer covering barrier in a model amperometric glucose oxidase enzyme electrode. The membrane was formed by cathodic electropolymerization of divinylbenzene/ethylvinylbenzene at the surface of a gold coated polyester support membrane. Permeability coefficients were determined for O2 and glucose across membranes with a range of polymer thicknesses. Anionic interferents (such as ascorbate), were screened from the working electrode via a charge exclusion mechanism. The enzyme electrode showed an initial 10% signal drift when first exposed to whole human blood over a period of 2 hours, after which responses remained essentially stable. Whole blood patient glucose determinations yielded a correlation coefficient of r2=0.99 compared to standard hospital analyses. [source] Polydivinylbenzene/Ethylvinylbenzene Composite Membranes for the Optimization of a Whole Blood Glucose SensorELECTROANALYSIS, Issue 1 2006Kerry Bridge Abstract A novel ultra thin polydivinylbenzene/ethylvinylbenzene composite membrane has been developed for use as the outer covering barrier in a model amperometric glucose oxidase enzyme electrode. The composite membrane was formed via the cathodic electropolymerization of divinylbenzene/ethylvinylbenzene at the surface of gold sputter coated host alumina membranes, (serving solely as a mechanical support for the thin polymer film). Permeability coefficients were determined for the enzyme substrates, O2 and glucose, across composite membranes formed with a range of polymer thicknesses. Due to the highly substrate diffusion limiting nature of the composite membrane, it was found that anionic interferents present in blood (such as ascorbate), were effectively screened from the working electrode via a charge exclusion mechanism, in a manner similar to previous findings within our laboratory. The enzyme electrode showed an initial 32% signal drift when first exposed to whole human blood over a period of 2 hours, after which time enzyme electrode responses remained essentially stable. Whole blood patient glucose determinations yielded a correlation coefficient of r2=0.97 in comparison to standard hospital analyses. [source] Development of an in vitro blood,brain barrier model to study the effects of endosulfan on the permeability of tight junctions and a comparative study of the cytotoxic effects of endosulfan on rat and human glial and neuronal cell culturesENVIRONMENTAL TOXICOLOGY, Issue 3 2006Melissa P. L. Chan Abstract Endosulfan, an organochlorine (OC) insecticide that belongs to the cyclodiene group, is one of the most commonly used pesticides to control pests in vegetables, cotton, and fruits. Porcine brain microvascular endothelial cells were used to develop a model to study the effects of endosulfan on the permeability of tight junctions in the blood,brain barrier (BBB). BBB permeability, measured as transendothelial electrical resistance, decreased in a dose- and time-dependent manner when treated with ,-endosulfan, ,-endosulfan, or endosulfan sulfate. Cytotoxicity testing revealed that the three endosulfans did not cause cell death at concentrations of 10 ,M and below. The ratio of the average permeability of the filter-grown endothelial cell monolayer to 14C-endosulfan (Pe) going from the outer to the inner compartments with that going from the inner to the outer compartments was approximately 1:1.2,2.1 after exposure to concentrations of 0.01,10 ,M. ,-Endosulfan, ,-endosulfan, and endosulfan sulfate had cytotoxic effects on rat glial (C6) and neuronal (PC12) cell cultures as well as on human glial (CCF-STTG1) and neuronal (NT2) cell cultures. The effects of ,-endosulfan were highly selective, with a wide range of LC50 values found in the different cultures, ranging from 11.2 ,M for CCF-STTG1 cells to 48.0 ,M for PC12 cells. In contrast, selective neurotoxicity was not so manifest in glial and neuronal cell cultures after exposure to endosulfan sulfate, as LC50 values were in the range of 10.4,21.6 ,M. CCF-STTG1 cells were more sensitive to ,-endosulfan and endosulfan sulfate, whereas NT2 cells were more sensitive to ,-endosulfan. © 2006 Wiley Periodicals, Inc. Environ Toxicol 21: 223,235, 2006. [source] Characterization and synaptic connectivity of melanopsin-containing ganglion cells in the primate retinaEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 10 2007Patricia R. Jusuf Abstract Melanopsin is a photopigment expressed in retinal ganglion cells, which are intrinsically photosensitive and are also involved in retinal circuits arising from rod and cone photoreceptors. This circuitry, however, is poorly understood. Here, we studied the morphology, distribution and synaptic input to melanopsin-containing ganglion cells in a New World monkey, the common marmoset (Callithrix jacchus). The dendrites of melanopsin-containing cells in marmoset stratify either close to the inner nuclear layer (outer stratifying), or close to the ganglion cell layer (inner stratifying). The dendritic fields of outer-stratifying cells tile the retina, with little overlap. However, the dendritic fields of outer-stratifying cells largely overlap with the dendritic fields of inner-stratifying cells. Thus, inner-stratifying and outer-stratifying cells may form functionally independent populations. The synaptic input to melanopsin-containing cells was determined using synaptic markers (antibodies to C-terminal binding protein 2, CtBP2, for presumed bipolar synapses, and antibodies to gephyrin for presumed amacrine synapses). Both outer-stratifying and inner-stratifying cells show colocalized immunoreactive puncta across their entire dendritic tree for both markers. The density of CtBP2 puncta on inner dendrites was about 50% higher than that on outer dendrites. The density of gephyrin puncta was comparable for outer and inner dendrites but higher than the density of CtBP2 puncta. The inner-stratifying cells may receive their input from a type of diffuse bipolar cell (DB6). Our results are consistent with the idea that both outer and inner melanopsin cells receive bipolar and amacrine input across their dendritic tree. [source] Tin-containing fluoride solutions as anti-erosive agents in enamel: an in vitro tin-uptake, tissue-loss, and scanning electron micrograph studyEUROPEAN JOURNAL OF ORAL SCIENCES, Issue 4 2009Nadine Schlueter Tin-containing fluoride solutions can reduce erosive tissue loss, but the effects of the reaction between tin and enamel are still not clear. During a 10-d period, enamel specimens were cyclically demineralized (0.05 M citric acid, pH 2.3, 6 × 5 min d,1) and remineralized (between the demineralization cycles and overnight). In the negative-control group, no further treatment was performed. Three groups were treated (2 × 2 min d,1) with tin-containing fluoride solutions (400, 1,400 or 2,100 ppm Sn2+, all 1,500 ppm F,, pH 4.5). Three additional groups were treated with test solutions twice daily, but without demineralization. Tissue loss was determined profilometrically. Energy-dispersive X-ray spectroscopy was used to measure the tin content on and within three layers (10 ,m each) beneath the surface. In addition, scanning electron microscopy was conducted. All test preparations significantly reduced tissue loss. Deposition of tin on surfaces was higher without erosion than with erosion, but no incorporation of tin into enamel was found without demineralization. Under erosive conditions, both highly concentrated solutions led to the incorporation of tin up to a depth of 20 ,m; the less-concentrated solution led to small amounts of tin in the outer 10 ,m. The efficacy of tin-containing solutions seems to depend mainly on the incorporation of tin into enamel. [source] cDNA cloning and characterization of a novel calmodulin-like protein from pearl oyster Pinctada fucataFEBS JOURNAL, Issue 19 2005Shuo Li Calcium metabolism in oysters is a very complicated and highly controlled physiological and biochemical process. However, the regulation of calcium metabolism in oyster is poorly understood. Our previous study showed that calmodulin (CaM) seemed to play a regulatory role in the process of oyster calcium metabolism. In this study, a full-length cDNA encoding a novel calmodulin-like protein (CaLP) with a long C-terminal sequence was identified from pearl oyster Pinctada fucata, expressed in Escherichia coli and characterized in vitro. The oyster CaLP mRNA was expressed in all tissues tested, with the highest levels in the mantle that is a key organ involved in calcium secretion. In situ hybridization analysis reveals that CaLP mRNA is expressed strongly in the outer and inner epithelial cells of the inner fold, the outer epithelial cells of the middle fold, and the dorsal region of the mantle. The oyster CaLP protein, with four putative Ca2+ -binding domains, is highly heat-stable and has a potentially high affinity for calcium. CaLP also displays typical Ca2+ -dependent electrophoretic shift, Ca2+ -binding activity and significant Ca2+ -induced conformational changes. Ca2+ -dependent affinity chromatography analysis demonstrated that oyster CaLP was able to interact with some different target proteins from those of oyster CaM in the mantle and the gill. In summary, our results have demonstrated that the oyster CaLP is a novel member of the CaM superfamily, and suggest that the oyster CaLP protein might play a different role from CaM in the regulation of oyster calcium metabolism. [source] Breakdown of wood in the Agüera streamFRESHWATER BIOLOGY, Issue 11 2002Joserra Díez SUMMARY 1. Breakdown of wood was compared at three sites of the Agüera catchment (Iberian Peninsula): two oligotrophic first-order reaches (one under deciduous forest, the other under Eucalyptus globulus plantations) and one third-order reach under mixed forest, where concentration of dissolved nutrients was higher. 2. Branches (diameter = 3 cm, length = 10 cm) of oak (Quercus robur), alder (Alnus glutinosa), pine (Pinus radiata) and eucalyptus, plus prisms (2.5 × 2.5 × 10 cm) of alder heartwood were enclosed in mesh bags (1 cm mesh size) and placed in the streams. Mass loss was determined over 4.5 years, whereas nutrient, lignin and ergosterol were determined over 3 years. In order to describe fungal dynamics, ergosterol was also determined separately on the outer and inner parts of some branches. 3. Breakdown rates ranged from 0.0159 to 0.2706 year,1 with the third-order reach having the highest values whatever the species considered. The most rapid breakdown occurred in alder heartwood and the slowest in pine branches; breakdown rates of oak, eucalyptus and alder branches did not differ significantly. 4. The highest nitrogen and phosphorus contents were found in alder, followed by oak, while pine and eucalyptus had low values. During breakdown, all materials rapidly lost phosphorus, but nitrogen content remained constant or slightly increased. Lignin content remained similar. 5. Peaks of ergosterol ranged from 0.023 to 0.139 mg g,1 and were higher in alder than in other species in two of the three sites. The third-order reach generally had the greatest increase in ergosterol, especially in alder branches, eucalyptus and alder heartwood. The overall species/site pattern of fungal biomass was thus consistent with the observed differences in breakdown. 6. When compared with leaves of the same species decomposing at these sites, wood breakdown appeared to be less sensitive to the tree species but more sensitive to stream water chemistry. Although wood breakdown is slower and its inputs are lower than those of leaf litter, its higher resistance to downstream transport results in a relatively high standing stock and a significant contribution to the energy flux. [source] FEELING IS BELIEVING, OR LANDSCAPE AS A WAY OF BEING IN THE WORLDGEOGRAFISKA ANNALER SERIES B: HUMAN GEOGRAPHY, Issue 3 2007Edmunds Valdem, rs Bunk ABSTRACT. This article is work-in-progress, an orientation of thought towards possibilities for individual human beings to diminish the distance between outer and inner landscapes imposed by cultural norms and happenstances such as exile. The dominance of visual landscapes and visual perceptions is seen as a pivotal problem, to be solved by the engagement of all the senses in landscape discourse and formation. All the senses are engaged in earliest childhood, as they have been in ,primitive' societies. While returning to either a state of childhood or primitivism is an impossible dream, it is possible to edge closer to human nature by engaging and honing all the senses, especially the ,earth-bound senses' of feel, smell and taste. Cultivating those senses and developing discourse about them, and incorporating them into landscape formation and enjoyment, is much more difficult than having a discourse about sight and hearing, for which there is a rich and well-developed symbolic language and which can be shared through various types of media. The way towards a deeper discourse about the earth-bound senses, and the way out of the tyranny of the visual, is to be found in stories, as several thinkers suggest. The story told is autobiographical and literary , a mode of geographic writing that I developed in a 2004 book (Bunk,e 2004a), in which the complex dilemmas of home and road were explored. This article shows how in the early 1970s I defined the individual's landscape as ,a unity in one's surroundings perceived through all the senses', with imagination as the key human faculty. And I tell the story of how through complex circumstances, a visually and emotionally repugnant landscape became emotionally and intellectually attractive, with a scent, not a picture or image causing the initial attraction. The external and internal landscapes are thus unified, resulting in a sense of timelessness and placelessness of deep existential significance for the person. [source] Laser Ablation (193 nm), Purification and Determination of Very Low Concentrations of Solar Wind Nitrogen Implanted in Targets from the GENESIS SpacecraftGEOSTANDARDS & GEOANALYTICAL RESEARCH, Issue 2 2009Laurent Zimmermann azote; ablation laser; purification; spectrométrie de masse; mission GENESIS The GENESIS space mission recovered ions emitted by the Sun during a 27 month period. In order to extract, purify and determine the very low quantities of solar nitrogen implanted in the GENESIS targets, a new installation was developed and constructed at the CRPG (Nancy, France). It permitted the simultaneous determination of nitrogen and noble gases extracted from the target by laser ablation. The extraction procedure used a 193 nm excimer laser that allowed for surface contamination in the outer 5 nm to be removed, followed by a step that removed 50 nm of the target material, extracting the solar nitrogen and noble gases implanted in the target. Following purification using Ti and Zr getters for noble gases and a Cu-CuO oxidation cycle for N2, the extracted gases were analysed by static mode (pumps closed) mass spectrometry using electron multiplier and Faraday cup detectors. The nitrogen blanks from the purification section and the static line (30 minutes) were only 0.46 picomole and 0.47 picomole, respectively. La mission GENESIS a récupéré des ions émis par le soleil pendant une période de 27 mois. Afin d'extraire, purifier et analyser de très faibles quantités d'azote solaire implantés dans des cibles GENESIS, une nouvelle installation a été développée et construite au CRPG. Elle a permis l'analyse simultanée de l'azote et des gaz nobles extraits de la couche d'or par ablation. La procédure d'extraction a utilisé un laser Excimer 193 nm qui a permis une étape d'extraction à 5 nm pour éliminer la pollution à la surface, suivie d'une étape qui a extrait jusqu'à une profondeur de 50 nm l'azote et les gaz rares solaires implantés dans la cible. Après une purification à l'aide de getters Ti et Zr pour les gaz rares et un cycle d'oxydation Cu-CuO pour N2, les gaz extraits ont été analysés en mode statique (pompage fermé) par spectrométrie de masse à l'aide d'un multiplicateur d'électrons et d'une cage de Faraday. Les blancs d'azote provenant de la partie purification et de la ligne en statique (30 minutes) étaient de seulement 0.46 et 0.47 picomole, respectivement. [source] Structural and Magnetic Properties of Various Ferromagnetic NanotubesADVANCED MATERIALS, Issue 45 2009Xiu-Feng Han Abstract The structural and magnetic properties of ferromagnetic nanotubes fabricated by a low cost electrodeposition method are investigated. The fabrication of various elemental ferromagnetic materials are described, such as Fe, Co, and Ni, and ferromagnetic alloys, such as NiFe, CoPt, CoFeB, and CoCrPt nanotube arrays, in aluminum oxide templates and polycarbonate membranes with different diameters, wall thicknesses, and lengths. The structural, magnetic, and magnetization reversal properties of these nanotubes are investigated as a function of the geometrical parameters. The angular dependence of the coercivity indicates a transition from the curling to the coherent mode for the ferromagnetic nanotubes. The results show that nanotube fabrication allows the outer and inner diameter, length, and thickness of the nanotubes to be tuned systematically. The magnetization processes of ferromagnetic nanotubes are influenced by the wall thickness. [source] Self-Assembled Nanoscale Ring Arrays from a Polystyrene- b -polyferrocenylsilane- b -poly(2-vinylpyridine)Triblock Terpolymer Thin FilmADVANCED MATERIALS, Issue 37 2009Vivian P. Chuang Hollow ring arrays with an outer and inner diameter of 33 and 11,nm, respectively, are formed from a thin film of poly-(styrene- b -ferrocenylethylmethylsilane- b -2-vinyl pyridine) (PS- b -PFS- b -P2VP) triblock terpolymer with a core/shell cylindrical morphology. The PS minority block forms a core surrounded by a PFS shell in a P2VP matrix; the core/shell structure is oriented perpendicularly to the film surface. The PS core and P2VP matrix blocks are partly removed using oxygen reactive ion etching, leaving ring patterns made from oxidized PFS. [source] Shaping ability of ProFile and K3 rotary Ni-Ti instruments when used in a variable tip sequence in simulated curved root canalsINTERNATIONAL ENDODONTIC JOURNAL, Issue 9 2004L. R. Ayar Abstract Aim, To compare the shaping ability of ProFile and K3 rotary Ni-Ti instruments when used in a variable tip sequence in simulated curved root canals with different curvature and radius. Methodology, ProFile or K3 .06 taper instruments were used to prepare simulated canals of 20° curvature and 5 mm radius (n = 10) and 30° curvature and 3 mm radius canals (n = 10) in resin blocks. All canals were prepared to an apical size 40 at 0.5 mm from the canal terminus using a variable tip crown-down sequence. Pre- and postinstrumentation digital images were recorded, and an assessment of the canal shape was determined using a computer image analysis program. The material removal from the inner and outer wall of the canal was measured at 28 measuring points, beginning 0.5 mm from the end-point of the canal and the data compared using the Mann,Whitney U -test. Results, In 20° and 30° canals both instruments significantly removed more (P < 0.05) material on the outer wall than the inner wall in the apical half of the canal. For ProFile files there was no significant difference in the amount of material removed on the outer canal wall between the 20° and 30° canals. However, in the K3 groups significantly more (P < 0.05) outer canal wall was removed in the apical area in 20° canals. When comparing both instruments the results showed that in 20° canals K3 instruments removed more outer and inner canal wall than ProFile instruments (P < 0.05) but that there was no significant difference (P > 0.05) between the instruments in 30° canals. Conclusion, Within the limitation of this study, both rotary nickel-titanium instruments prepared a well-shaped root canal with minimal canal transportation. [source] Coupled solution of the species conservation equations using unstructured finite-volume methodINTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS, Issue 4 2010Ankan Kumar Abstract A coupled solver was developed to solve the species conservation equations on an unstructured mesh with implicit spatial as well as species-to-species coupling. First, the computational domain was decomposed into sub-domains comprised of geometrically contiguous cells,a process similar to additive Schwarz decomposition. This was done using the binary spatial partitioning algorithm. Following this step, for each sub-domain, the discretized equations were developed using the finite-volume method, and solved using an iterative solver based on Krylov sub-space iterations, that is, the pre-conditioned generalized minimum residual solver. Overall (outer) iterations were then performed to treat explicitness at sub-domain interfaces and nonlinearities in the governing equations. The solver is demonstrated for both two-dimensional and three-dimensional geometries for laminar methane,air flame calculations with 6 species and 2 reaction steps, and for catalytic methane,air combustion with 19 species and 24 reaction steps. It was found that the best performance is manifested for sub-domain size of 2000 cells or more, the exact number depending on the problem at hand. The overall gain in computational efficiency was found to be a factor of 2,5 over the block (coupled) Gauss,Seidel procedure. All calculations were performed on a single processor machine. The largest calculations were performed for about 355 000 cells (4.6 million unknowns) and required 900,MB of peak runtime memory and 19,h of CPU on a single processor. Copyright © 2009 John Wiley & Sons, Ltd. [source] The Inner Shell Influence on the Electronic Structure of Double-Walled Carbon Nanotubes,ADVANCED MATERIALS, Issue 1 2008Y. Tison We present STM and STS results obtained for double-walled carbon nanotubes. In the case displayed here, the STS results exhibit the Van Hove singularities corresponding to semi conducting tubes for both the outer and the inner shell and a finite density of states at the Fermi level (EF) is observed for a DWNT. We associate this behavior to the presence of an intershell interaction. [source] The network behind spatio-temporal patterns: building low-complexity retinal models in CNN based on morphology, pharmacology and physiologyINTERNATIONAL JOURNAL OF CIRCUIT THEORY AND APPLICATIONS, Issue 2 2001Csaba Rekeczky Abstract In this paper, a vertebrate retina model is described based on a cellular neural network (CNN) architecture. Though largely built on the experience of previous studies, the CNN computational framework is considerably simplified: first-order RC cells are used with space-invariant nearest-neighbour interactions only. All non-linear synaptic connections are monotonic continuous functions of the pre-synaptic voltage. Time delays in the interactions are continuous represented by additional first-order cells. The modelling approach is neuromorphic in its spirit relying on both morphological and pharmacological information. However, the primary motivation lies in fitting the spatio-temporal output of the model to the data recorded from biological cells (tiger salamander). In order to meet a low-complexity (VLSI) implementation framework some structural simplifications have been made. Large-neighbourhood interaction (neurons with large processes), furthermore inter-layer signal propagation are modelled through diffusion and wave phenomena. This work presents novel CNN models for the outer and some partial models for the inner (light adapted) retina. It describes an approach that focuses on efficient parameter tuning and also makes it possible to discuss adaptation, sensitivity and robustness issues on retinal ,image processing' from an engineering point of view. Copyright © 2001 John Wiley & Sons, Ltd. [source] Space-time ring-TCM codes with CPM based on the decomposed model for transmission over Rayleigh fading channelsINTERNATIONAL JOURNAL OF COMMUNICATION SYSTEMS, Issue 5 2006A. Pereira Abstract Space,time (ST) coding is a proved technique for achieving high data rates in 3G mobile systems that combines coding, modulation and multiple transmitters and receivers. A novel algorithm is proposed for ST ring trellis-coded modulation (ST-RTCM) systems with continuous-phase modulation (CPM) when the channel coefficients are known to the receiver. This algorithm is based on the CPM decomposed model, which exploits the memory properties of this modulation method, resulting in a straightforward implementation of joint ST coding and CPM, which is particularly suitable for ring codes. This new scheme is used to investigate the performance of the delay diversity code with CPM over slow Rayleigh fading channels, in particular with MSK which is one of the most widely used modulation methods of continuous phase. Furthermore, a feedback version of delay diversity allowed by the decomposition is tested in 1REC and 1RC systems. This feedback configuration is seen to provide good results for low signal-to-noise ratios. Simulations results are also provided for multilevel ST-RTCM codes that achieve a higher throughput than MSK-coded systems. Additionally the serial concatenation of an outer Reed,Solomon code with an ST-RTCM code is shown, this combination further reduces the error probability and achieves even more reliable communications. Copyright © 2005 John Wiley & Sons, Ltd. [source] Analysis of hair lipids and tensile properties as a function of distance from scalpINTERNATIONAL JOURNAL OF COSMETIC SCIENCE, Issue 4 2005L. Duvel Synopsis Cuticle cells form the outer covering surrounding and protecting the cortex. The cuticle cells are thin, flat and overlap, and intercellular lipid lamellae are found in the gaps between the cell boundaries. The lipid lamellae are also found within the cortex in the cell boundaries between the long fribrous corticle cells. In addition, the outer surfaces of the cuticle cells are covered by a monolayer of covalently bound fatty acids, a major component of which is 18-methyleicosanoic acid. The fatty acids are thought to be attached through thio-ester linkages. Together these lipids are thought to be major determinants of the physical properties of the hair. The present study tested the hypothesis that both free and covalently bound lipids are progressively lost during normal environmental exposures. This progressive loss within the cuticle layers may, in part, lead to an increased susceptibility of the protein and lipid lamellae in the cortex to degradation. This degradation, in turn, would contribute to a progressive decrease in the tensile properties of the hair. Research grade hair was cut into five segments from the root to the distal end. Lipids from each segment were extracted and analyzed by thin-layer chromatography in conjunction with photodensitometry. The major free polar lipid classes in the hair included ceramides, glucosylceramides and cholesterol sulfate. The concentrations of all of the free polar lipids as well as the covalently bound fatty acids decreased in going from the root to the distal end of the hair. In addition, there was a significant reduction in tensile properties of the hair from the root to distal end. In conclusion, the progressive loss of endogenous free and covalently bound lipids from hair, which are probably related to normal weathering of the hair and grooming practices, may help contribute to a marked decrease in tensile properties to the hair. Résumé Les cellules de la cuticule forment le revêtement externe qui protège le cortex des cheveux. Les cellules de la cuticule sont minces, plates et se chevauchent. De fines couches de lipides sont présentes dans le matériau assurant la jonction entre les cellules cuticulaires. D'autres fines couches de lipides sont également présentes dans les espaces intercellulaires du cortex, entre les longues cellules corticales fibreuses. De plus, les surfaces externes des cellules de la cuticule sont recouvertes d'une couche monomoléculaire d'acides gras liés par covalence, un des composants majoritaires étant l'acide 18-méthyleicosanoique. On pense que ces acides gras sont fixés par liaisons thioesters. On pense également que l'ensemble de ces lipides joue un rôle important sur les propriétés physiques du cheveu. L'hypothèse testée dans cette étude est que les lipides libres et ceux liés par covalence sont progressivement éliminés lors de l'exposition normale des cheveux à l'environnement extérieur. Cette délipidation progressive de la cuticule pourrait, en partie, entraîner une plus grande sensibilité des constituants lipidiques et protéiniques du cortex aux agressions externes et accroître leur dégradation. Cette dégradation, à son tour, contribuerait à une diminution progressive des propriétés mécaniques en extension des cheveux. Des cheveux de provenance commerciale ont été coupés en cinq segments de leur racine à leur extrémité distale. Les lipides de chaque segment ont été extraits, séparés par chromatographie couche mince et dosés par densitométrie photographique. Les classes majoritaires de lipides polaires libres sont constituées de céramides, de glucosylcéramides et de sulfate de cholestérol. Les teneurs de tous les lipides polaires libres ainsi que des acides gras liés par covalence diminuent de la racine à l'extrémité distale du cheveu. De plus, on constate une réduction considérable des propriétés mécaniques en extension des cheveux de la racine à l'extrémité distale.-.En conclusion, la perte progressive des lipides endogènes libres et liés par covalence, probablement attribuables aux expositions à l'environnement et au stress des traitements capillaires peut aider à contribuer à une baisse marquée des propriétés mécaniques en extension des cheveux. [source] Composition, soaking, cooking properties and thermal characteristics of starch of chickpeas, wrinkled peas and smooth peasINTERNATIONAL JOURNAL OF FOOD SCIENCE & TECHNOLOGY, Issue 5 2001Beata Klamczynska We investigated both the distribution of protein, ash and starch in legume (chickpeas, smooth and wrinkled peas) cotyledons, and the soaking and cooking characteristics, including gelatinization and retrogradation, of the starch. There were large differences in composition between different types of legumes and also between the outer and inner parts of legume cotyledons. Wrinkled peas exhibited much higher water absorption during prolonged soaking and there were higher hardness value determined for cooked seeds compared with chickpeas and smooth peas. While the hardness of cooked seeds decreased continuously as cooking time increased to 110 min, all legume starch was fully gelatinized after cooking for 70 min. [source] New results for the analysis of linear systems with time-invariant delaysINTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL, Issue 12 2003Jianrong Zhang Abstract This paper presents a comparison system approach for the analysis of stability and ,, performance of linear time-invariant systems with unknown delays. The comparison system is developed by replacing the delay elements with certain parameter-dependent Padé approximations. It is shown using the special properties of the Padé approximation to e,s that the value sets of these approximations provide outer and inner coverings for that of each delay element and that the robust stability of the outer covering system is a sufficient condition for the stability of the original time delay system. The inner covering system, in turn, is used to provide an upper bound on the degree of conservatism of the delay margin established by the sufficient condition. This upper bound is dependent only upon the Padé approximation order and may be made arbitrarily small. In the single delay case, the delay margin can be calculated explicitly without incurring any additional conservatism. In the general case, this condition can be reduced with some (typically small) conservatism to finite-dimensional LMIs. Finally, this approach is also extended to the analysis of ,, performance for linear time-delay systems with an exogenous disturbance. Copyright © 2003 John Wiley & Sons, Ltd. [source] Expression of synapsin and co-localization with serotonin and RFamide-like immunoreactivity in the nervous system of the chordoid larva of Symbion pandora (Cycliophora)INVERTEBRATE BIOLOGY, Issue 1 2010Ricardo Cardoso Neves Abstract. Cycliophora is one of the most recently described metazoan phyla and hitherto includes only two species: Symbion pandora and Symbion americanus. With a very complex life cycle, cycliophorans are regarded as an enigmatic group with an uncertain phylogenetic position, although they are commonly considered lophotrochozoan protostomes. In order to extend the database concerning the distribution of immunoreactive substances in the free-swimming chordoid larva of S. pandora, we investigated synapsin immunoreactivity using fluorescence-coupled antibodies in combination with confocal laserscanning microscopy. Moreover, we analyzed the co-localization patterns of synapsin, serotonin, and RFamide-like immunoreactivity in the chordoid larva by 3D imaging technology based on the confocal microscopy image stacks. Synapsin is expressed in large parts of the bilobed anterior cerebral ganglion including anterior and dorsal projections. Two pairs of ventral neurites run longitudinally into the larval body of which the inner pair shows only weak, scattered synapsin immunoreactivity. In addition, a lateral synapsin immunoreactive projection emerges posteriorly from each ventral longitudinal axon. Double immunostaining shows co-localization of synapsin and serotonin in the cerebral ganglion, the outer and the inner ventral neurites, and the anterior projections. Synapsin and RFamide-like immunoreactivity co-occur in the cerebral ganglion, the outer ventral neurites, and the dorsal projections. Accordingly, the cerebral ganglion and the outer ventral neurites are the only neural structures that co-express the two neurotransmitters and synapsin. The overall neuroanatomical condition of the cycliophoran chordoid larva resembles much more the situation of adult rather than larval life cycle stages of a number of spiralian taxa. [source] Mechanism of light-induced translocation of arrestin and transducin in photoreceptors: Interaction-restricted diffusionIUBMB LIFE, Issue 1 2008Vladlen Z. Slepak Abstract Many signaling proteins change their location within cells in response to external stimuli. In photoreceptors, this phenomenon is remarkably robust. The G protein of rod photoreceptors and rod transducin concentrates in the outer segments (OS) of these neurons in darkness. Within ,30 minutes after illumination, rod transducin redistributes throughout all of the outer and inner compartments of the cell. Visual arrestin concurrently relocalises from the inner compartments to become sequestered primarily within the OS. In the past several years, the question of whether these proteins are actively moved by molecular motors or whether they are redistributed by simple diffusion has been extensively debated. This review focuses on the most essential works in the area and concludes that the basic principle driving this protein movement is diffusion. The directionality and light dependence of this movement is achieved by the interactions of arrestin and transducin with their spatially restricted binding partners. © 2007 IUBMB IUBMB Life, 60(1): 2,9, 2008 [source] Protein Import Into MitochondriaIUBMB LIFE, Issue 3-5 2001Stefan A. Paschen Abstract Most mitochondrial proteins are encoded by the nuclear genome and thus have to be imported into mitochondria from the cytosol. Protein translocation across and into the mitochondrial membranes is a multistep process facilitated by the coordinated action of at least four specialized translocation systems in the outer and inner membranes of mitochondria. The outer membrane contains one general translocase, the TOM complex, whereas three distinct translocases are located in the inner membrane, which facilitates translocation of different classes of preproteins. The TIM23 complex mediates import of matrix-targeted preproteins with N -terminal presequences, whereas hydrophobic preproteins with internal targeting signals are inserted into the inner membrane via the TIM22 complex. The OXA translocase mediates the insertion of preproteins from the matrix space into the inner membrane. This review focuses on the structural organization and function of the import machinery of the model organisms of Saccharomyces cerevisiae and Neurospora crassa . In addition, the molecular basis of a new human mitochondrial disorder is discussed, the Mohr-Tranebjaerg syndrome. This is the first known disease, which is caused by an impaired mitochondrial protein import machinery leading to progressive neurodegeneration. [source] Synthesis of Rhodium Colloidal Nano-Coating Grafted Mesoporous Silica Composite and its Application as Efficient Environmentally Benign Catalyst for Heck-Type Reaction of Arylboronic AcidsADVANCED SYNTHESIS & CATALYSIS (PREVIOUSLY: JOURNAL FUER PRAKTISCHE CHEMIE), Issue 5 2008Liang Li Abstract The synthesis and characterization of rhodium colloidal layer grafted mesoporous SBA-15 material, designated as SBA-Rh, are presented. In the preparation of this new catalyst, SBA-15 mesoporous material was used as support without any pretreatment. The SiH functional groups were introduced onto the surface which resulted in highly dispersed metal colloid layer both on the outer and inner surface of the supporting material. The material was investigated for Heck-type coupling reactions of alkenes with ayboronic in organic/water solvent. The ultrahigh specific area, large pore opening, and highly dispersed catalyst species in SBA-Rh material created one of the most active heterogeneous catalysts for such reactions. Rhodium element was not detected in the final mixture by ICP after reaction. The catalyst species showed very high stability against leaching from the matrix and can be recycled for repeated use. [source] Development and evaluation of a one-step loop-mediated isothermal amplification for detection of spring viraemia of carp virusJOURNAL OF APPLIED MICROBIOLOGY, Issue 4 2008Z. Liu Abstract Aim:, Spring viraemia of carp virus (SVCV) is the causative agent of SVC disease. The main aim of our study was to develop a one-step reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for rapid, sensitive and effective detection of SVCV. Methods and Results:, A set of four specific primers, two outer and two inner primers were designed based on the SVCV M gene for RT-LAMP assay. The sensitivity and specificity of RT-LAMP were determined and clinical test was performed under optimized amplification conditions (64°C, 60 min). The results showed that the assay has a high specificity and the detection limit was 80 copies using 10-fold series dilutions of SVCV RNA, 10 times more sensitive than nest reverse transcription-polymerase chain reaction. In the detection of 472 fish samples, this assay showed excellent agreement with the standard virus isolation method (, = 0·807). Conclusions:, A sensitive and specific RT-LAMP assay was successfully developed to monitor and detect SVCV. Significance and Impact of the Study:, This work provides a robust method for evaluating the risk of SVCV. Given the advantages of LAMP in the detection of SVCV, this method can be applied to diagnose other viruses, which pose serious threats to the aquaculture industry. [source] | ||||||||||||||||||||||||||||||||||||||||||||||