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Optimum
Kinds of Optimum Terms modified by Optimum Selected AbstractsEVOLUTION AND STABILITY OF THE G-MATRIX ON A LANDSCAPE WITH A MOVING OPTIMUMEVOLUTION, Issue 8 2004Adam G. Jones Abstract In quantitative genetics, the genetic architecture of traits, described in terms of variances and covariances, plays a major role in determining the trajectory of evolutionary change. Hence, the genetic variance-covariance matrix (G-matrix) is a critical component of modern quantitative genetics theory. Considerable debate has surrounded the issue of G-matrix constancy because unstable G-matrices provide major difficulties for evolutionary inference. Empirical studies and analytical theory have not resolved the debate. Here we present the results of stochastic models of G-matrix evolution in a population responding to an adaptive landscape with an optimum that moves at a constant rate. This study builds on the previous results of stochastic simulations of G-matrix stability under stabilizing selection arising from a stationary optimum. The addition of a moving optimum leads to several important new insights. First, evolution along genetic lines of least resistance increases stability of the orientation of the G-matrix relative to stabilizing selection alone. Evolution across genetic lines of least resistance decreases G-matrix stability. Second, evolution in response to a continuously changing optimum can produce persistent maladaptation for a correlated trait, even if its optimum does not change. Third, the retrospective analysis of selection performs very well when the mean G-matrix (,) is known with certainty, indicating that covariance between G and the directional selection gradient (3 is usually small enough in magnitude that it introduces only a small bias in estimates of the net selection gradient. Our results also show, however, that the contemporary ,-matrix only serves as a rough guide to ,. The most promising approach for the estimation of G is probably through comparative phylogenetic analysis. Overall, our results show that directional selection actually can increase stability of the G-matrix and that retrospective analysis of selection is inherently feasible. One ?riajor remaining challenge is to gain a sufficient understanding of the G-matrix to allow the confident estimation of ,. [source] PROFIT MAXIMIZATION AND SOCIAL OPTIMUM WITH NETWORK EXTERNALITY,THE MANCHESTER SCHOOL, Issue 2 2006URIEL SPIEGEL The paper analyzes the options open to monopoly firms that sell Internet services. We consider two groups of customers that are different in their reservation prices. The monopoly uses price discrimination between customers by producing two versions of the product at positive price for high-quality product and a free version at zero price for lower-quality product. The monopoly can sell advertising space to increase its revenue but risks losing customers who are annoyed by advertising. Network externalities increase the incentive to increase output; thus we find cases where the profit maximization is consistent with maximum social welfare. [source] Assessment of parathyroid autotransplantation for preservation of parathyroid function after total thyroidectomyHEAD & NECK: JOURNAL FOR THE SCIENCES & SPECIALTIES OF THE HEAD AND NECK, Issue 10 2003Magdy I. El-Sharaky MD Abstract Background. Hypoparathyroidism with permanent hypocalcemia is a well-recognized complication after thyroid surgery. Aim. This study was conducted to assess the role of immediate parathyroid autotransplantation in the preservation of parathyroid function after total thyroidectomy. Patients and Methods. Twenty-eight patients had autotransplantation of parathyroid glands resected or devascularized during total thyroidectomy. Data were collected prospectively regarding demographics, indication for surgery, operative procedure, pathologic diagnosis, number of glands transplanted, and subsequent course. Thyroid nodules were evaluated by ultrasonography, radionuclide scanning, and/or fine-needle aspiration cytology. All patients had serum ionized calcium, phosphorus, and intact parathyroid hormone (PTH) levels measured preoperatively and monitored regularly postoperatively for a period of 14 weeks and again at 6 months after operation. Patients were categorized into three groups according to the number of glands transplanted: one (group 1, n = 6), two (group 2, n = 14), or three glands (group 3, n = 8). In three other volunteers, one parathyroid gland was transplanted in the brachioradialis and subjected to electron microscopy 1, 2, and 4 weeks after transplantation. Results. Total thyroidectomy was performed for malignant disease in 16 patients (57.1%) and for benign disease in 12 (42.9%) patients. All patients reverted to asymptomatic normocalcemia without the need for any medications within 4 to 14 weeks. Normal levels of serum markers were regained slower when one gland was transplanted compared with two or three glands (P < .01). Electron microscopic examination showed evidence of ischemic degeneration in the transplanted tissues 1 week postoperatively. Regeneration started by the second week and coincided with normalization of PTH levels. Optimum resting and nearly normal status of parathyroid tissue was achieved by the fourth week. Conclusions. This study showed that active PTH production coincides with regeneration of parathyroid cells and that autotransplantation of at least two resected or devascularized glands during total thyroidectomy nearly eliminates permanent postoperative hypoparathyroidism, thus improving the safety of total thyroidectomy performed for malignant or benign disease. © 2003 Wiley Periodicals, Inc. Head and Neck 25: 799,807, 2003 [source] Optimal regenerator performance in Stirling enginesINTERNATIONAL JOURNAL OF ENERGY RESEARCH, Issue 9 2009P. C. T. de Boer Abstract The key component of a Stirling engine is its regenerative heat exchanger. This device is subject to losses due to dissipation arising from the flow through the regenerator as well as due to imperfect heat transfer between the regenerator material and the gas. The magnitudes of these losses are characterized by the Stanton number St and the Fanning friction factor f, respectively. Using available data for the ratio St/f, results are found for the Carnot efficiency and the power output of the regenerator. They depend on the conductance and on the ratio of pressures at the two sides of the regenerator. Optimum results for efficiency and power output of the regenerator are derived in the limit of zero Mach number. The results are applied to the Stirling engine. The efficiency and the power output of the engine are found for given amplitude of the compression piston. Optimization with respect to regenerator conductance and piston phase angle leads to a maximum possible value of the power output. Under optimal conditions, the Carnot efficiency just below this maximum is close to 100%. Copyright © 2009 John Wiley & Sons, Ltd. [source] Licht ins Dunkel , Intelligente Lichttechnik für höhere VerkehrssicherheitLASER TECHNIK JOURNAL, Issue 3 2006Leiter Vorentwicklung/Konzepte Lichttechnik Stephan Berlitz Innovationen in der Lichttechnik basierten oft auf der Einführung neuer Lichtquellen. Auf Halogenlampen folgten Xenonscheinwerfer, später gekoppelt mit schwenkbaren Scheinwerfern. Diese Entwicklungen führten für den Fahrer zu einer immer besseren Ausleuchtung der Fahrbahn. Audi adaptive light mit schwenkbaren Xenon plus-Scheinwerfern stellt momentan das Optimum an Fahrbahnausleuchtung dar. Zusätzlich, und nur bei Audi, sind bei jedem Fahrzeug mit Xenon plus-Scheinwerfern separate Tagfahrleuchten integriert. Diese stellen durch das Gesehenwerden einen hohen passiven Sicherheitsvorteil dar. Fußgänger und anderer entgegen kommender Verkehr können das Fahrzeug dadurch tagsüber in allen Verkehrssituationen optimal erkennen. Und der nächste Entwicklungssprung zeichnet sich bereits ab: LED-Scheinwerfer bieten nochmals neue Möglichkeiten. [source] Climate cooling promoted the expansion and radiation of a threatened group of South American orchids (Epidendroideae: Laeliinae)BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 3 2010ALEXANDRE ANTONELLI The Brazilian Cerrado is the most species-rich tropical savanna in the world. Within this biome, the Campos Rupestres (,rocky savannas') constitute a poorly studied and highly threatened ecosystem. To better understand how plants characteristic of this vegetation have evolved and come to occupy the now widely-separated patches of rocky formations in eastern Brazil, we reconstruct the biogeographical history of the rare orchid genus Hoffmannseggella. We apply parsimony and Bayesian methods to infer the phylogenetic relationships among 40 out of the 41 described species. Absolute divergence times are calculated under penalized likelihood and compared with estimates from a Bayesian relaxed clock. Ancestral ranges are inferred for all nodes of the phylogeny using Fitch optimization and statistical dispersal vicariance analysis. In all analyses, phylogenetic uncertainty is taken into account by the independent analysis of a large tree sample. The results obtained indicate that Hoffmannseggella underwent rapid radiation around the Middle/Late Miocene (approximately 11,14 Mya). The region corresponding today to southern Minas Gerais acted as a main source area for several independent range expansions north- and eastwards via episodic corridors. These results provide independent evidence that climate cooling following the Middle Miocene Climatic Optimum (approximately 15 Mya) led to important vegetational shifts in eastern Brazil, causing an increase in the dominance of open versus closed habitats. Polyploidy following secondary contact of previously isolated populations may have been responsible for the formation of many species, as demonstrated by the high ploidy levels reported in the genus. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100, 597,607. [source] Isotopic climate record in a Holocene stalagmite from Ursilor Cave (Romania)JOURNAL OF QUATERNARY SCIENCE, Issue 4 2002Bogdan Petroniu Onac Abstract The PU-2 stalagmite from Ursilor Cave provides the first dated Romanian isotope record for the Holocene. The overall growth rate of the speleothem was 3.5 cm kyr,1, corresponding to a temporal resolution of 142 y between each isotope analysis. The ,Hendy' tests indicate that isotopic equilibrium conditions occurred during the formation of PU-2, and hence that it is suitable for palaeoclimatic studies. The relationship between ,18O and temperature was found to be positive. This can be interpreted either as rain-out with distance from the west-northwest ocean source of evaporation or shifts in air mass source with changing North Atlantic Oscillation indices. Applying five U,Th thermal ionisation mass spectrometric (TIMS) dates to a 17.5 cm isotope profile (,18O and ,13C) along the stalagmite growth axis enabled a tentative interpretation of the palaeoclimate signal over the past 7.1 kyr. Spikes of depleted isotopic ,18O values are centred near ca. 7, ca. 5.2 and ca. 4 ka, reflecting cool conditions. The record shows two warm intervals between ca. 3.8 and ca. 3.2 ka (the maximum warmth) and from ca. 2 to ca. 1.4 ka, when the ,18O values were less negative than present. The ,Holocene Climate Optimum' spanning the time interval from ca. 6.8 to ca. 4.4 ka is not well expressed in the PU-2 stalagmite. Individual spikes of lighter ,13C are interpreted as indicative of periods of heavy rainfall, at ca. 7, ca. 5.5, and ca. 3.5 ka. The overall trend to lighter ,13C in the PU-2 stalagmite may reflect a gradual decrease in water,rock interaction. The results demonstrate that the effect of North Atlantic oceanic changes extended to the investigated area. Nevertheless, some differences in temporal correlation and intensity of stable isotopic response to these climatic events have been found, but the exact nature of these differences and the underlying mechanism is yet to be determined. Copyright © 2002 John Wiley & Sons, Ltd. [source] Bi-level Programming Formulation and Heuristic Solution Approach for Dynamic Traffic Signal OptimizationCOMPUTER-AIDED CIVIL AND INFRASTRUCTURE ENGINEERING, Issue 5 2006Dazhi Sun Conventional methods of signal timing optimization assume given traffic flow pattern, whereas traffic assignment is performed with the assumption of fixed signal timing. This study develops a bi-level programming formulation and heuristic solution approach (HSA) for dynamic traffic signal optimization in networks with time-dependent demand and stochastic route choice. In the bi-level programming model, the upper level problem represents the decision-making behavior (signal control) of the system manager, while the user travel behavior is represented at the lower level. The HSA consists of a Genetic Algorithm (GA) and a Cell Transmission Simulation (CTS) based Incremental Logit Assignment (ILA) procedure. GA is used to seek the upper level signal control variables. ILA is developed to find user optimal flow pattern at the lower level, and CTS is implemented to propagate traffic and collect real-time traffic information. The performance of the HSA is investigated in numerical applications in a sample network. These applications compare the efficiency and quality of the global optima achieved by Elitist GA and Micro GA. Furthermore, the impact of different frequencies of updating information and different population sizes of GA on system performance is analyzed. [source] Using parallelization and hardware concurrency to improve the performance of a genetic algorithmCONCURRENCY AND COMPUTATION: PRACTICE & EXPERIENCE, Issue 4 2007Vijay Tirumalai Abstract Genetic algorithms (GAs) are powerful tools for solving many problems requiring the search of a solution space having both local and global optima. The main drawback for GAs is the long execution time normally required for convergence to a solution. This paper discusses three different techniques that can be applied to GAs to improve overall execution time. A serial software implementation of a GA designed to solve a task scheduling problem is used as the basis for this research. The execution time of this implementation is then improved by exploiting the natural parallelism present in the algorithm using a multiprocessor. Additional performance improvements are provided by implementing the original serial software GA in dedicated reconfigurable hardware using a pipelined architecture. Finally, an advanced hardware implementation is presented in which both pipelining and duplicated hardware modules are used to provide additional concurrency leading to further performance improvements. Copyright © 2006 John Wiley & Sons, Ltd. [source] Performance Measures for Selection of Metamodels to be Used in Simulation OptimizationDECISION SCIENCES, Issue 1 2002Anthony C. Keys ABSTRACT This paper points out the need for performance measures in the context of simulation optimization and suggests six such measures. Two of the measures are indications of absolute performance, whereas the other four are useful in assessing the relative performance of various candidate metamodels. The measures assess performance on three fronts: accuracy of placing optima in the correct location, fit to the response, and fit to the character of the surface (expressed in terms of the number of optima). Examples are given providing evidence of the measures' utility,one in a limited scenario deciding which of two competing metamodels to use as simulation optimization response surfaces vary, and the other in a scenario of a researcher developing a new, sequential optimization search procedure. [source] Male-biased size dimorphism in ichneumonine wasps (Hymenoptera: Ichneumonidae) , the role of sexual selection for large male sizeECOLOGICAL ENTOMOLOGY, Issue 3 2005Tiit Teder Abstract., 1.,Sexual differences in body size are expected to evolve when selection on female and male sizes favours different optima. 2.,Insects have typically female-biased size dimorphism that is usually explained by the strong fecundity advantage of larger size in females. However, numerous exceptions to this general pattern have led to the search for selective pressures favouring larger size in males. 3.,In this study, the benefits of large size were investigated in males of four species of ichneumonine wasps, a species-rich group of parasitoids, many representatives of which exhibit male-biased size dimorphism. 4.,Mating behaviour of all ichneumonine wasps are characterised by pre-copulatory struggles, in the course of which males attempt to override female reluctance to mate. A series of laboratory trials was conducted to study the determinants of male mating success. 5.,A tendency was found for larger males as well as those in better condition to be more successful in achieving copulations. Size dimorphism of the species studied, mostly male-biased in hind tibia length but female-biased in body weight, indicates that sexual selection in males favours longer bodies and appendages rather than larger weight. 6.,The qualitative similarity of the mating patterns suggests that sexual selection cannot completely explain the considerable among-species differences in sexual size dimorphism. 7.,The present study cautions against using various size indices as equivalents for calculating sexual size dimorphism. 8.,It is suggested that female reluctance in ichneumonine wasps functions as a mechanism of female mate assessment. [source] Multi-walled carbon nanotube composites with polyacrylate prepared for open-tubular capillary electrochromatographyELECTROPHORESIS, Issue 19 2010Jian-Lian Chen Abstract A new phase containing immobilized carbon nanotubes (CNTs) was synthesized by in situ polymerization of acid-treated multi-walled CNTs using butylmethacrylate (BMA) as the monomer and ethylene dimethacrylate as the crosslinker on a silanized capillary, forming a porous-layered open-tubular column for CEC. Incorporation of CNT nanomaterials into a polymer matrix could increase the phase ratio and take advantage of the easy preparation of an OT-CEC column. The completed BMA-CNT column was characterized by SEM, ATR-IR, and EOF measurements, varying the pH and the added volume organic modifier. In the multi-walled CNTs structure, carboxylate groups were the major ionizable ligands on the phase surface exerting the EOF having electroosmotic mobility, 4.0×104,cm2,V,1,S,1, in the phosphate buffer at pH 2.8 and RSD values (n=5), 3.2, 4.1, and 4.3%, for three replicate capillaries at pH 7.6. Application of the BMA-CNT column in CEC separations of various samples, including nucleobases, nucleosides, flavonoids, and phenolic acids, proved satisfactory upon optimization of the running buffers. Their optima were found in the borate buffers at pH 9.0/50,mM, pH 9.5/10,mM/50% v/v ACN, and pH 9.5/30,mM/10% v/v methanol, respectively. The separations could also be used to assess the relative contributions of electrophoresis and chromatography to the CEC mechanism by calculating the corresponding velocity and retention factors. Discussions about interactions between the probe solutes and the bonded phase included the ,,, interactions, electrostatic repulsion, and hydrogen bonding. Furthermore, a reversed-phase mode was discovered to be involved in the chromatographic retention. [source] Digestive peptidases in Tenebrio molitor and possibility of use to treat celiac diseaseENTOMOLOGICAL RESEARCH, Issue 3 2007Elena N. ELPIDINA Abstract Digestion in Tenebrio molitor larvae occurs in the midgut, where there is a sharp pH gradient from 5.6 in the anterior midgut (AM) to 7.9 in the posterior midgut (PM). Accordingly, digestive enzymes are compartmentalized to the AM or PM. Enzymes in the AM are soluble and have acidic or neutral pH optima, while PM enzymes have alkaline pH optima. The main peptidases in the AM are cysteine endopeptidases presented by two to six subfractions of anionic proteins. The major activity belongs to cathepsin L, which has been purified and characterized. Serine post-proline cleaving peptidase with pH optimum 5.3 was also found in the AM. Typical serine digestive endopeptidases, trypsin-like and chymotrypsin-like, are compartmentalized to the PM. Trypsin-like activity is due to one cationic and three anionic proteinases. Chymotrypsin-like activity consists of one cationic and four anionic proteinases, four with an extended binding site. The major cationic trypsin and chymotrypsin have been purified and thoroughly characterized. The predicted amino acid sequences are available for purified cathepsin L, trypsin and chymotrypsin. Additional sequences for putative digestive cathepsins L, trypsins and chymotrypsins are available, implying multigene families for these enzymes. Exopeptidases are found in the PM and are presented by a single membrane aminopeptidase N-like peptidase and carboxypeptidase A, although multiple cDNAs for carboxypeptidase A were found in the AM, but not in the PM. The possibility of the use of two endopeptidases from the AM , cathepsin L and post-proline cleaving peptidase , in the treatment of celiac disease is discussed. [source] A molecular assessment of the iron stress response in the two phylogenetic clades of TrichodesmiumENVIRONMENTAL MICROBIOLOGY, Issue 1 2010P. Dreux Chappell Summary Trichodesmium spp. play key roles in global carbon and nitrogen budgets and thus defining what controls their productivity is important for understanding climate change. While iron availability has been shown to be an important chemical factor for controlling both growth and nitrogen fixation rates in Trichodesmium, all culture experiments to date have focused solely on representatives from one clade of Trichodesmium. Genomic sequence analysis determined that the Trichodesmium erythraeum (IMS101) genome contains many of the archetypical genes involved in the prokaryotic iron stress response. Focusing on three of these genes, isiB, idiA and feoB, we found that all three showed an iron stress response in axenic T. erythraeum (IMS101), and their sequences were well conserved across four species in our Trichodesmium culture collection [consisting of two T. erythraeum strains (IMS101 and GBRTRLI101), two Trichodesmium tenue strains (Z-1 and H9-4), Trichodesmium thiebautii and Trichodesmium spiralis]. With clade-specific quantitative PCR (qPCR) primers for one of these genes, isiB, we found that high isiB expression at low Fe levels corresponded to specific reductions in N2 fixation rates in both major phylogenetic clades of Trichodesmium (the T. erythraeum clade and T. tenue clade). With regard to the two clades, the most significant difference determined was temperature optima, while more subtle differences in growth, N2 fixation rate and gene expression responses to Fe stress were also observed. However the apparent conservation of the Fe stress response in the Trichodesmium genus suggests that it is an important adaptation for their niche in the oligotrophic ocean. [source] SPATIAL AND TEMPORAL DYNAMICS IN A SEXUAL SELECTION MOSAICEVOLUTION, Issue 4 2008Thomas P. Gosden Selective regimes and phenotypic optima could either change smoothly and in a clinal fashion or be spatially organized in a more unpredictable mosaic pattern over the geographic landscape. When natural or sexual selection is driven by intra- or interspecific biotic interactions, fine-grained spatial variation in selective regimes could result in selection mosaics rather than clinal variation in selection. We investigated temporal variation and spatial organization in sexual selection on male body size along an ecological coastal-inland gradient of a polymorphic damselfly Ischnura elegans. Body size increased in a clinal fashion along this gradient: animals were smaller in size at the coast, but became larger in the inland areas. In contrast, the sexual selection regimes on male body size showed evidence of more fine-grained spatial organization with no evidence for a clinal pattern and low spatial autocorrelations between populations. These spatially fine-grained sexual selection regimes varied in sign and magnitude and were driven by a combination of the densities of heritable female color morphs and local female body sizes. We suggest that the spatial organization of the selective regimes can be interpreted as a sexual selection mosaic that is influenced by highly localized density- and frequency-dependent social interactions. [source] EFFECTS OF MIGRATION ON THE GENETIC COVARIANCE MATRIXEVOLUTION, Issue 10 2007Frédéric Guillaume In 1996, Schluter showed that the direction of morphological divergence of closely related species is biased toward the line of least genetic resistance, represented by gmax, the leading eigenvector of the matrix of genetic variance,covariance (the G -matrix). G is used to predict the direction of evolutionary change in natural populations. However, this usage requires that G is sufficiently constant over time to have enough predictive significance. Here, we explore the alternative explanation that G can evolve due to gene flow to conform to the direction of divergence between incipient species. We use computer simulations in a mainland,island migration model with stabilizing selection on two quantitative traits. We show that a high level of gene flow from a mainland population is required to significantly affect the orientation of the G -matrix in an island population. The changes caused by the introgression of the mainland alleles into the island population affect all aspects of the shape of G (size, eccentricity, and orientation) and lead to the alignment of gmax with the line of divergence between the two populations' phenotypic optima. Those changes decrease with increased correlation in mutational effects and with a correlated selection. Our results suggest that high migration rates, such as those often seen at the intraspecific level, will substantially affect the shape and orientation of G, whereas low migration (e.g., at the interspecific level) is unlikely to substantially affect the evolution of G. [source] MULTILOCUS GENETICS AND THE COEVOLUTION OF QUANTITATIVE TRAITSEVOLUTION, Issue 7 2006Michael Kopp Abstract We develop and analyze an explicit multilocus genetic model of coevolution. We assume that interactions between two species (mutualists, competitors, or victim and exploiter) are mediated by a pair of additive quantitative traits that are also subject to direct stabilizing selection toward intermediate optima. Using a weak-selection approximation, we derive analytical results for a symmetric case with equal locus effects and no mutation, and we complement these results by numerical simulations of more general cases. We show that mutualistic and competitive interactions always result in coevolution toward a stable equilibrium with no more than one polymorphic locus per species. Victimexploiter interactions can lead to different dynamic regimes including evolution toward stable equilibria, cycles, and chaos. At equilibrium, the victim is often characterized by a very large genetic variance, whereas the exploiter is polymorphic in no more than one locus. Compared to related one-locus or quantitative genetic models, the multilocus model exhibits two major new properties. First, the equilibrium structure is considerably more complex. We derive detailed conditions for the existence and stability of various classes of equilibria and demonstrate the possibility of multiple simultaneously stable states. Second, the genetic variances change dynamically, which in turn significantly affects the dynamics of the mean trait values. In particular, the dynamics tend to be destabilized by an increase in the number of loci. [source] THE POPULATION GENETICS OF ADAPTATION ON CORRELATED FITNESS LANDSCAPES: THE BLOCK MODELEVOLUTION, Issue 6 2006H. Allen Orr Abstract Several recent theoretical studies of the genetics of adaptation have focused on the mutational landscape model, which considers evolution on rugged fitness landscapes (i.e., ones having many local optima). Adaptation in this model is characterized by several simple results. Here I ask whether these results also hold on correlated fitness landscapes, which are smoother than those considered in the mutational landscape model. In particular, I study the genetics of adaptation in the block model, a tunably rugged model of fitness landscapes. Considering the scenario in which adaptation begins from a high fitness wild-type DNA sequence, I use extreme value theory and computer simulations to study both single adaptive steps and entire adaptive walks. I show that all previous results characterizing single steps in adaptation in the mutational landscape model hold at least approximately on correlated landscapes in the block model; many entire-walk results, however, do not. [source] The role of residues R97 and Y331 in modulating the pH optimum of an insect ,-glycosidase of family 1FEBS JOURNAL, Issue 24 2003Sandro R. Marana The activity of the digestive ,-glycosidase from Spodoptera frugiperda (Sf,gly50, pH optimum 6.2) depends on E399 (pKa = 4.9; catalytic nucleophile) and E187 (pKa = 7.5; catalytic proton donor). Homology modelling of the Sf,gly50 active site confirms that R97 and Y331 form hydrogen bonds with E399. Site-directed mutagenesis showed that the substitution of R97 by methionine or lysine increased the E399 pKa by 0.6 or 0.8 units, respectively, shifting the pH optima of these mutants to 6.5. The substitution of Y331 by phenylalanine increased the pKa of E399 and E187 by 0.7 and 1.6 units, respectively, and displaced the pH optimum to 7.0. From the observed ,pKa it was calculated that R97 and Y331 contribute 3.4 and 4.0 kJ·mol,1, respectively, to stabilization of the charged E399, thus enabling it to be the catalytic nucleophile. The substitution of E187 by D decreased the pKa of residue 187 by 0.5 units and shifted the pH optimum to 5.8, suggesting that an electrostatic repulsion between the deprotonated E399 and E187 may increase the pKa of E187, which then becomes the catalytic proton donor. In short the data showed that a network of noncovalent interactions among R97, Y331, E399 and E187 controls the Sf,gly50 pH optimum. As those residues are conserved among the family 1 ,-glycosidases, it is proposed here that similar interactions modulate the pH optimum of all family 1 ,-glycosidases. [source] Salinity as a structuring factor for the composition and performance of bacterioplankton degrading riverine DOCFEMS MICROBIOLOGY ECOLOGY, Issue 2 2003Silke Langenheder Abstract The impact of salinity on the composition and functional performance (biomass production, growth efficiency and growth rates) of bacterial communities was investigated using batch cultures growing on dissolved organic carbon from a river draining into the Northern Baltic Sea. The cultures were adjusted to riverine or estuarine salinity levels and inoculated with bacteria from these two environments. Bacterial growth efficiencies differed in response to salinity and the origin of the inoculum. When salinity was adjusted to correspond to the salinity at the site where the inoculum was retrieved, growth efficiency was relatively high (11.5±2.6%). However, when bacteria were confronted with a shift in salinity, growth efficiency was lower (7.5±2.0%) and more of the utilized carbon was respired. In contrast, growth rates were higher when bacteria were exposed to a change in salinity. The composition of the bacterial communities developing in the batch cultures differed, as shown by 16S rDNA DGGE, depending on the origin of the inoculum and salinity. Reverse and direct DNA,DNA hybridization revealed salinity optima in the growth of specific bacterial strains as well as broader phylogenetic groups. Strains belonging to the ,- and ,- Proteobacteria, Actinobacteria and ,- Proteobacteria other than the genus Pseudomonas showed higher relative abundance under freshwater conditions, whereas strains of the genus Pseudomonas and the Cytophaga,Flavobacterium,Bacteroides group were favored by estuarine conditions. Generally, our results demonstrate functional changes associated with changes in community composition. We suggest that even moderate changes in salinity affect bacterial community composition, which subsequently leads to altered growth characteristics. [source] Functional importance of Asp37 from a family 11 xylanase in the binding to two proteinaceous xylanase inhibitors from wheatFEMS MICROBIOLOGY LETTERS, Issue 1 2004Tariq A. Tahir Abstract Aspergillus niger xylanase is a target enzyme of the two wheat proteinaceous inhibitors, XIP-I and TAXI-I. We previously suggested that the xylanase "thumb" region was XIP-I binding site. Here, we expressed the Asp37Ala mutant in Pichia pastoris and showed that the mutation abolished the enzyme capacity to interact with both inhibitors, suggesting a direct contact at the active site. The mutant pH profile was altered, confirming the key role of Asp37 in determining the pH optima of glycoside hydrolase family 11. The results are consistent with a competitive inhibition mode and underline the strategic importance of Asp37 in the inhibition mechanism. [source] Phytase activity in Cryptococcus laurentii ABO 510FEMS YEAST RESEARCH, Issue 3 2007Jason Van Staden Abstract Ten Cryptococcus strains were screened for phytase activity, of which the Cryptococcus laurentii ABO 510 strain showed the highest level of activity. The cell wall-associated enzyme displayed temperature and pH optima of 62°C and 5.0, respectively. The enzyme was thermostable at 70°C, with a loss of 40% of its original activity after 3 h. The enzyme was active on a broad range of substrates, including ATP, d -glucose 6-phosphate, d -fructose 1,6-diphosphate and p -nitrophenyl phosphate (p -NPP), but its preferred substrate was phytic acid (Km of 21 ,M). The enzyme activity was completely inhibited by 0.5 mM inorganic phosphate or 5 mM phytic acid, and moderately inhibited in the presence of Hg2+, Zn2+, Cd2+ and Ca2+. These characteristics suggest that the Cry. laurentii ABO 510 phytase may be considered for application as an animal feed additive to assist in the hydrolysis of phytate complexes to improve the bioavailability of phosphorus in plant feedstuff. [source] An application of canonical correspondence analysis for developing ecological quality assessment metrics for river macrophytesFRESHWATER BIOLOGY, Issue 5 2005IAN DODKINS Summary 1. Aquatic macrophyte composition and abundance is required by the European Union's Water Framework Directive for determining ecological status. Five metrics were produced that can be combined to determine the deviation of aquatic macrophytes from reference conditions in Northern Ireland's rivers. 2. Species optima and niche breadths along silt, nitrate, pH, conductivity and dissolved oxygen gradients were generated from aquatic macrophyte and water quality surveys conducted at 273 sites throughout Northern Ireland using Canonical Correspondence Analysis (CCA). Five metric scores based on these environmental gradients were determined at new monitoring sites using the mean optima of the species occurring at the site, weighted by percentage cover and niche breadth of each species. 3. A preliminary reference network of 32 sites of high physico-chemical and hydromorphological quality, and representative of the range of river types in Northern Ireland, enabled reference metric scores to be produced for each river type. Five unimpacted and twenty impacted sites were used for testing the performance of the metrics. By subtracting reference metric scores from metric scores at a monitoring site measures of ecological impact could be determined along five different impact gradients. Metrics were also combined to give a measure of total ecological change. 4. The metrics system distinguished unimpacted from impacted sites and correctly identified 77% of the known impacts. The metrics distinguished different types of impact, e.g. silt and nitrate. 5. Aquatic macrophyte occurrence and abundance has high natural variability at a site, both temporally and spatially. This method was designed to be sensitive to ecological change whilst reducing noise caused by natural variation. [source] Distribution of benthic diatoms in U.S. rivers in relation to conductivity and ionic compositionFRESHWATER BIOLOGY, Issue 8 2003Marina Potapova Summary 1We quantified the relationships between diatom relative abundance and water conductivity and ionic composition, using a dataset of 3239 benthic diatom samples collected from 1109 river sites throughout the U.S.A. [U.S. Geological Survey National Water-Quality Assessment (NAWQA) Program dataset]. This dataset provided a unique opportunity to explore the autecology of freshwater diatoms over a broad range of environmental conditions. 2Conductivity ranged from 10 to 14 500 ,S cm,1, but most of the rivers had moderate conductivity (interquartile range 180,618 ,S cm,1). Calcium and bicarbonate were the dominant ions. Ionic composition, however, varied greatly because of the influence of natural and anthropogenic factors. 3Canonical correspondence analysis (CCA) and Monte Carlo permutation tests showed that conductivity and abundances of major ions (HCO + CO, Cl,, SO, Ca2+, Mg2+, Na+, K+) all explained a statistically significant amount of the variation in assemblage composition of benthic diatoms. Concentrations of HCO + CO and Ca2+ were the most significant sources of environmental variance. 4The CCA showed that the gradient of ionic composition explaining most variation in diatom assemblage structure ranged from waters dominated by Ca2+ and HCO + CO to waters with higher proportions of Na+, K+, and Cl,. The CCA also revealed that the distributions of some diatoms correlated strongly with proportions of individual cations and anions, and with the ratio of monovalent to divalent cations. 5We present species indicator values (optima) for conductivity, major ions and proportions of those ions. We also identify diatom taxa characteristic of specific major-ion chemistries. These species optima may be useful in future interpretations of diatom ecology and as indicator values in water-quality assessment. [source] Thermal performance of juvenile Atlantic Salmon, Salmo salar L.FUNCTIONAL ECOLOGY, Issue 6 2001B. JONSSON Summary 1,Experimental data for maximum growth and food consumption of Atlantic Salmon (Salmo salar L.) parr from five Norwegian rivers situated between 59 and 70°N were analysed and modelled. The growth and feeding models were also applied to groups of Atlantic Salmon growing and feeding at rates below the maximum. The data were fitted to the Ratkowsky model, originally developed for bacterial growth. 2,The rates of growth and food consumption varied significantly among populations but the variation appeared unrelated to thermal conditions in the river of population origins. No correlation was found between the thermal conditions and limits for growth, thermal growth optima or maximum growth, and hypotheses of population-specific thermal adaptation were not supported. Estimated optimum temperatures for growth were between 16 and 20 °C. 3, Model parameter estimates differed among growth-groups in that maximum growth and the performance breadth decreased from fast to slow growing individuals. The optimum temperature for growth did not change with growth rate. 4, The model for food consumption (expressed in energy terms) peaked at 19,21 °C, which is only slightly higher than the optimal temperature for growth. Growth appeared directly related to food consumption. Consumption was initiated ,2 °C below the lower temperature for growth and terminated ,1·5 °C above the upper critical temperature for growth. Model parameter estimates for consumption differed among growth-groups in a manner similar to the growth models. 5,By combining the growth and consumption models, growth efficiencies were estimated. The maximum efficiencies were high, 42,58%, and higher in rivers offering hostile than benign feeding and growth opportunities. [source] Dispersion of Nodes Added to a NetworkGEOGRAPHICAL ANALYSIS, Issue 4 2005Michael Kuby For location problems in which optimal locations can be at nodes or along arcs but no finite dominating set has been identified, researchers may desire a method for dispersing p additional discrete candidate sites along the m arcs of a network. This article develops and tests minimax and maximin models for solving this continuous network location problem, which we call the added-node dispersion problem (ANDP). Adding nodes to an arc subdivides it into subarcs. The minimax model minimizes the maximum subarc length, while the maximin model maximizes the minimum subarc length. Like most worst-case objectives, the minimax and maximin objectives are plagued by poorly behaved alternate optima. Therefore, a secondary MinSumMax objective is used to select the best-dispersed alternate optima. We prove that equal spacing of added nodes along arcs is optimal to the MinSumMax objective. Using this fact we develop greedy heuristic algorithms that are simple, optimal, and efficient (O(mp)). Empirical results show how the maximum subarc, minimum subarc, and sum of longest subarcs change as the number of added nodes increases. Further empirical results show how using the ANDP to locate additional nodes can improve the solutions of another location problem. Using the p-dispersion problem as a case study, we show how much adding ANDP sites to the network vertices improves the p-dispersion objective function compared with (a) network vertices only and (b) vertices plus randomly added nodes. The ANDP can also be used by itself to disperse facilities such as stores, refueling stations, cell phone towers, or relay facilities along the arcs of a network, assuming that such facilities already exist at all nodes of the network. [source] Interactive effects of water table and precipitation on net CO2 assimilation of three co-occurring Sphagnum mosses differing in distribution above the water tableGLOBAL CHANGE BIOLOGY, Issue 3 2009BJORN J. M. ROBROEK Abstract Sphagnum cuspidatum, S. magellanicum and S. rubellum are three co-occurring peat mosses, which naturally have a different distribution along the microtopographical gradient of the surface of peatlands. We set out an experiment to assess the interactive effects of water table (low: ,10 cm and high: ,1 cm) and precipitation (present or absent) on the CO2 assimilation and evaporation of these species over a 23-day period. Additionally, we measured which sections of the moss layer were responsible for light absorption and bulk carbon uptake. Thereafter, we investigated how water content affected carbon uptake by the mosses. Our results show that at high water table, CO2 assimilation of all species gradually increased over time, irrespective of the precipitation. At low water table, net CO2 assimilation of all species declined over time, with the earliest onset and highest rate of decline for S. cuspidatum. Precipitation compensated for reduced water tables and positively affected the carbon uptake of all species. Almost all light absorption occurred in the first centimeter of the Sphagnum vegetation and so did net CO2 assimilation. CO2 assimilation rate showed species-specific relationships with capitulum water content, with narrow but contrasting optima for S. cuspidatum and S. rubellum. Assimilation by S. magellanicum was constant at a relatively low rate over a broad range of capitulum water contents. Our study indicates that prolonged drought may alter the competitive balance between species, favoring hummock species over hollow species. Moreover, this study shows that precipitation is at least equally important as water table drawdown and should be taken into account in predictions about the fate of peatlands with respect to climate change. [source] Habitat selection by Ortolan Buntings Emberiza hortulana in post-fire succession in Catalonia: implications for the conservation of farmland populationsIBIS, Issue 4 2009MYLES H. M. MENZ The Ortolan Bunting Emberiza hortulana is a long-distance migrant that has suffered major population declines across much of its European breeding range. While northern populations are bound largely to farmland, Mediterranean populations are largely confined to habitats subject to recurrent wildfires. Habitat selection of the Ortolan Bunting was assessed in a recently burnt area in Catalonia at landscape and habitat scales. A Zero-inflated Poisson procedure was used to model the abundance of birds in relation to landscape and habitat variables. The most parsimonious landscape model predicted the highest abundance on south-facing slopes, with a gradient above 10°. The most parsimonious habitat model showed a positive quadratic effect of bare ground and regenerating oak Quercus spp., with predicted optima for abundance around 20,30% and 20% cover, respectively. There was a clear relationship between predicted abundance of the Ortolan Bunting and post-fire regenerating oak shrubs. South-facing, moderately sloping areas were favoured and bare ground was a key feature of the species' habitat. A matrix combining patches of sparse oak shrubs and patches of bare ground appears to be the optimal breeding habitat in the Mediterranean. The maintenance or provision of similar habitat features, especially patches of bare ground, may prove crucial for the conservation of rapidly declining Ortolan Bunting populations on farmland across temperate Europe. [source] Purification and characterization of ,-glucosidase in Apis cerana indicaINSECT SCIENCE, Issue 3 2008Chanpen Chanchao Abstract Apis cerana indica foragers were used for the isolation of a full-length ,-glucosidase cDNA, and for purification of the active nascent protein by low salt extraction of bee homogenates, ammonium sulphate precipitation and diethylaminoethyl-cellulose and Superdex 200 chromatographies. The molecular mass of the purified protein was estimated by polyacrylamide gel electrophoresis resolution, and the pH, temperature, incubation, and substrate optima for enzymic activity were determined. Conformation of the purified enzyme as ,-glucosidase was performed by BLAST software homology comparisons between matrix assisted laser desorption ionization time of flight mass spectroscopy analysed partial tryptic peptide digests of the purified protein with the predicted amino acid sequences deduced from the ,-glucosidase cDNA sequence. [source] Index tracking with constrained portfoliosINTELLIGENT SYSTEMS IN ACCOUNTING, FINANCE & MANAGEMENT, Issue 1-2 2007Dietmar Maringer Passive portfolio management strategies, such as index tracking, are popular in the industry, but so far little research has been done on the cardinality of such a portfolio, i.e. on how many different assets ought to be included in it. One reason for this is the computational complexity of the associated optimization problems. Traditional optimization techniques cannot deal appropriately with the discontinuities and the many local optima emerging from the introduction of explicit cardinality constraints. More recent approaches, such as heuristic methods, on the other hand, can overcome these hurdles. This paper demonstrates how one of these methods, differential evolution, can be used to solve the constrained index-tracking problem. We analyse the financial implication of cardinality constraints for a tracking portfolio using an empirical study of the Down Jones Industrial Average. We find that the index can be tracked satisfactorily with a subset of its components and, more important, that the deviation between computed actual tracking error and the theoretically achievable tracking error out of sample is negligibly affected by the portfolio's cardinality. Copyright © 2007 John Wiley & Sons, Ltd. [source] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||