Home About us Contact
|
Home About us Contact | ||
|
|
||
Only Small Differences (only + small_difference)
Selected AbstractsGenetic analysis of tocopherol content and composition in winter rapeseedPLANT BREEDING, Issue 2 2001F. D. Goffman Abstract The improvement of the nutritional value and the stability properties of rapeseed oil is partly hindered by the lack of information on the genetic control of tocopherols. The objectives of this investigation were to characterize the inheritance of tocopherols by using two factorial mating designs (North Carolina Design II, NCII). The first (NCII -A) was produced with two sets of nine parents each, one selected for high and the other for low total tocopherol contents. In the second (NCII -B), each set consisted of six parents, which were either high or low for the ,/,-tocopherol ratio. Parents and F1 hybrids from both experiments were tested under field conditions in 1998 and 1999 using a completely randomized design with two replications. Only small differences were detected between mean values of parents and F1 hybrids. General combining ability (GCA) variation in both experiments was highly significant (P < 0.01) for all tocopherol traits. Significant specific combining ability (SCA) effects were only detected for a-tocopherol in NCIIA and therefore for the ,-/,-tocopherol ratio. These results indicate that tocopherol contents and composition are controlled mainly by genes with additive effects. Interactions of F1 hybrids and GCA effects with the environment were significant for only tocopherol contents and not for tocopherol composition. [source] Separable approximations of space-time covariance matricesENVIRONMETRICS, Issue 7 2007Marc G. Genton Abstract Statistical modeling of space-time data has often been based on separable covariance functions, that is, covariances that can be written as a product of a purely spatial covariance and a purely temporal covariance. The main reason is that the structure of separable covariances dramatically reduces the number of parameters in the covariance matrix and thus facilitates computational procedures for large space-time data sets. In this paper, we discuss separable approximations of nonseparable space-time covariance matrices. Specifically, we describe the nearest Kronecker product approximation, in the Frobenius norm, of a space-time covariance matrix. The algorithm is simple to implement and the solution preserves properties of the space-time covariance matrix, such as symmetry, positive definiteness, and other structures. The separable approximation allows for fast kriging of large space-time data sets. We present several illustrative examples based on an application to data of Irish wind speeds, showing that only small differences in prediction error arise while computational savings for large data sets can be obtained. Copyright © 2007 John Wiley & Sons, Ltd. [source] The fidelity of the cortical retinotopic map in human amblyopiaEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 5 2007Xingfeng Li Abstract To delineate the fidelity of the functional cortical organization in humans with amblyopia, we undertook an investigation into how spatial information is mapped across the visual cortex in amblyopic observers. We assessed whether the boundaries of the visual areas controlled by the amblyopic and fellow fixing eye are in the same position, the fidelity of the retinotopic map within different cortical areas and the average receptive field size in different visual areas. The functional organization of the visual cortex was reconstructed using a fMRI phase-encoded retinotopic mapping analysis. This method sequentially stimulates each point in the visual field along the axes of a polar-coordinate system, thereby reconstructing the representation of the visual field on the cortex. We found that the cortical areas were very similar in normals and amblyopes, with only small differences in boundary positions of different visual areas between fixing and fellow amblyopic eye activation. Within these corresponding visual areas, we did find anomalies in retinotopy in some but not all amblyopes that were not simply a consequence of the poorer functional responses and affected central and peripheral field regions. Only a small increase in the average (or collective) receptive field size was found for full-field representation in amblyopes and none at all for central field representation. The former may simply be a consequence of the poorer functional responses. [source] Non-Covalent Interactions of Organic Halogen Compounds with Aromatic Systems , Analyses of Crystal Structure DataEUROPEAN JOURNAL OF ORGANIC CHEMISTRY, Issue 6 2005Dariusz Swierczynski Abstract The Cambridge Structural Database showed in mid 2002 about 20.000 structures containing halogen atoms and aryl rests with distances d between the aryl center and the halogen atom, which would allow both hydrogen bonds with the aromatic hydrogens and/or van der Waalsinteractions with the ,-cloud. The latter are characterized by short distances d and by small angles , between the vector along the aryl centroid,halogen line and the perpendicular vector originating in the aryl center (the plane normal). The cases with d < 3.0 Å for F; and d < 3.5 Å for Cl, Br or I (outliers neglected), and , , 10 ± 5°, indicating predominating van der Waals forces, amount to several hundreds. The majority of fragments exhibit larger d and , values, in line with avoidance of electrostatic repulsion between the negative partial charges of the halogens and the ,-cloud center, and with an increasing electrostatic attraction with the aromatic hydrogen atoms. The corresponding hydrogen bonds are characterized by longer distances d and by angle values of , > 60° (about 40 % of the fragments), with only very few cases close to linear hydrogen bonds (then with , = 90°). Compounds containing metal,halogen bonds were omitted in view of possible strong orientational interferences. The structures were screened with four different halogen binding modes, all of them containing the halogen attached to a carbon atom, but with different hybrizations at the connecting carbon centers. The results show only small differences in the distance distributions, with a slight preference for smaller , values for sp2 frameworks. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2005) [source] Postfire response of North American boreal forest net primary productivity analyzed with satellite observationsGLOBAL CHANGE BIOLOGY, Issue 8 2003Jeffrey A. Hicke Abstract Fire is a major disturbance in the boreal forest, and has been shown to release significant amounts of carbon (C) to the atmosphere through combustion. However, less is known about the effects on ecosystems following fire, which include reduced productivity and changes in decomposition in the decade immediately following the disturbance. In this study, we assessed the impact of fire on net primary productivity (NPP) in the North American boreal forest using a 17-year record of satellite NDVI observations at 8- km spatial resolution together with a light-use efficiency model. We identified 61 fire scars in the satellite observations using digitized fire burn perimeters from a database of large fires. We studied the postfire response of NPP by analyzing the most impacted pixel within each burned area. NPP decreased in the year following the fire by 60,260 g C m,2 yr,1 (30,80%). By comparing pre- and postfire observations, we estimated a mean NPP recovery period for boreal forests of about 9 years, with substantial variability among fires. We incorporated this behavior into a carbon cycle model simulation to demonstrate these effects on net ecosystem production. The disturbance resulted in a release of C to the atmosphere during the first 8 years, followed by a small, but long-lived, sink lasting 150 years. Postfire net emissions were three times as large as from a model run without changing NPP. However, only small differences in the C cycle occurred between runs after 8 years due to the rapid recovery of NPP. We conclude by discussing the effects of fire on the long-term continental trends in satellite NDVI observed across boreal North America during the 1980s and 1990s. [source] Analysis of the incidence of infectious pancreatic necrosis mortality in pedigreed Atlantic salmon, Salmo salar L., populationsJOURNAL OF FISH DISEASES, Issue 11 2006D R Guy Abstract A total of 77 124 Atlantic salmon post-smolts, representing 197 full-sib families produced by 149 males and 197 females, experienced a field challenge from infectious pancreatic necrosis virus (IPNV), following transfer to three separate seawater sites. The first IPN mortality was observed 45 days after transfer, and the duration of the epidemic varied between 37 and 92 days among sites. Mortalities were traced to their parental families by PIT (Passive Integrated Transpondes) tag records and DNA genotyping. Full-sib family mean incidence of mortality was calculated for each family on each site. Heritabilities were estimated based on the heterogeneity of chi-square using incidence within half-sib families and the variance in incidence among full-sib families, both on the observed and underlying liability scale. The observed correlation among families across sites was used to estimate genetic correlations. The overall mortality rate was 10.8%, with only small differences between sites, ranging from 10.3% to 11.9%. Heritabilities on the liability scale were found to be moderate to strong, and ranged between 0.24 and 0.81, with a pooled estimate of 0.43, greater than is typically associated with disease traits. Genetic correlations among sites were all substantial, between 0.71 and 0.78, and indicated that a substantial component of the genetic variation displayed within sites was common to all. The results show that field challenges can yield very good genetic information on family differences in resistance, especially when replicated over sites, which may then be developed for use in selection for breeding strains of Atlantic salmon with greater resistance to IPN. [source] Microstructure of ball milled and compacted Co,Ni,Al alloys from the , rangeJOURNAL OF MICROSCOPY, Issue 2 2009W. MAZIARZ Summary Two powder alloys from the , phase region of compositions Co28.5Ni36.5Al35 and Co35Ni30Al35 were ball milled for 80 h in a high energy ball mill. The formation of amorphous structure was observed after 40 h of milling and further milling did not change their structure. The analytical and high-resolution transmission electron microscopy (TEM, HREM) examination of powder structure showed that nanoparticles of L10 phase of size of about 5 nm were present within the amorphous matrix. The vacuum hot pressing of the milled powders under pressure of 400 MPa at 700°C for 12 min resulted in the formation of compacts with density of about 70% of the theoretical one. The additional heat treatment at 1300°C for 6 h followed by water quenching, led to significant improvement of density and induced the martensitic transformation manifested by a broad heat effect. The characteristic temperatures of the transformation were determined using DSC measurements, which revealed only small differences within the examined alloys compositions. TEM structure studies of heat-treated alloys allowed to identify the structure of an ordered , (B2) phase and L10 martrensite. [source] Genetic Relationship of Pyrenophora graminea, P. teres f. maculata and P. teres f. teres Assessed by RAPD AnalysisJOURNAL OF PHYTOPATHOLOGY, Issue 2 2007J. Bakonyi Abstract Barley-pathogenic Pyrenophora isolates are P. graminea (PG), P. teres f. maculata (PTM) and P. teres f. teres (PTT), which cause foliar leaf stripe, spot blotch and net blotch lesions, respectively. However, the species are often indistinguishable by morphological and cultural characteristics. Random amplified polymorphic DNA (RAPD) analysis has been used to study the genetic relationship amongst 11 PG, 9 PTM and 23 PTT isolates from distant geographical locations. Using seven primers, 55 (52.38%) polymorphic DNA bands were detected out of 105 different fragments amplified in the three pathogens. Genotypic diversity was high as all but two PTT strains had distinct multilocus RAPD fingerprints. Unweighted pair-group method with arithmetic average (UPGMA) clustering separated the isolates into three main clusters, corresponding to the three pathogens studied. No clear geographical substructuring was found. Nei's gene diversity analysis detected only small differences (max. 6.6%) in band frequencies but considerable levels of differentiation were observed among the pathogen species/forms. However, the variability among the Pyrenophora species/forms (max. 42.0%) was less than within species/forms (max. 58%). Nei's unbiased genetic distance values were in agreement with UPGMA clustering and gene diversity analysis: the two forms of P. teres showed higher divergence from one another (D = 0.132) than the distance found between PG and PTM (D = 0.094). The results suggest that the present taxonomical classification of these morphological taxa may not correspond to their phylogenetic relationship and that there is a very close genetic relationship amongst barley-pathogenic Pyrenophora species, but genetic exchanges between them could be infrequent. [source] Central corneal thickness in European (white) individuals, especially children and the elderly, and assessment of its possible importance in clinical measures of intra-ocular pressureOPHTHALMIC AND PHYSIOLOGICAL OPTICS, Issue 6 2002Michael J. Doughty Purpose:,To ascertain the impact of central corneal thickness (CCT, as assessed by pachometry) and central corneal curvature (as assessed by keratometry) on clinical measures of intra-ocular pressure (IOP, as assessed by tonometry), especially in the young and elderly. Methods:,Pachometry, keratometry and tonometry were carried out on three groups, namely children aged 5,15 years, adults aged 32,60 years, and elderly individuals aged between 61 and 82 years. For children, ultrasound pachometry was combined with non-contact tonometry (NCT), specular microscopy was used with Perkins tonometry in the adults, and ultrasound pachometry was used with Perkins tonometry for the elderly. Central corneal curvature was assessed by keratometry. Results:,The average CCT in children was 0.529 ± 0.034 mm (n=104, ±S.D.), averaged 0.533 ± 0.033 in adults (n=75) and 0.527 ± 0.034 mm (n=91) in the elderly. Tonometry values averaged 16.7 ± 2.9 mm in children, 13.0 ± 3.5 mmHg in adults and 13.6 ± 2.5 mm in the elderly group. Central corneal thickness values were not predictably different in relation to central corneal curvature values. Regression analyses indicated that the tonometry values were higher in both children and the elderly who had thicker corneas (and vice versa) (p , 0.003), with the measures increasing by 1.3 ± 0.4 and 2.6 ± 0.4 mmHg for a 10% difference in CCT in children and the elderly, respectively. For adults, no statistically significant difference in tonometry values could be demonstrated with respect to CCT (<1 mmHg for a 10% difference in CCT), and for no group were the CCT or tonometry values predictably different in relation to central corneal curvature values. Conclusions:,The results of these studies, albeit relatively small scale, indicate that in young or elderly individuals with essentially normal IOP and CCT measures, the tonometry values show only small differences with respect to CCT. The slope in the observed relationship was not that different from an average of 1.5 mmHg for a 10% different in CCT, as obtained from a literature analysis over a 30-year period. The magnitude of the effect does not provide evidence that pachometry needs to be routinely performed in glaucoma screening protocols based on tonometry. Notwithstanding, the finding of higher than expected tonometry values should be further investigated, by pachometry, especially in very young children and in the elderly. [source] The structure and dynamics in solution of Cu(I) pseudoazurin from Paracoccus pantotrophusPROTEIN SCIENCE, Issue 5 2000Gary S. Thompson Abstract The solution structure and backbone dynamics of Cu(I) pseudoazurin, a 123 amino acid electron transfer protein from Paracoccus pantotrophus, have been determined using NMR methods. The structure was calculated to high precision, with a backbone RMS deviation for secondary structure elements of 0.35 ± 0.06 A, using 1,498 distance and 55 torsion angle constraints. The protein has a double-wound Greek-key fold with two ,-helices toward its C-terminus, similar to that of its oxidized counterpart determined by X-ray crystallography. Comparison of the Cu(I) solution structure with the X-ray structure of the Cu(II) protein shows only small differences in the positions of some of the secondary structure elements. Order parameters S2, measured for amide nitrogens, indicate that the backbone of the protein is rigid on the picosecond to nanosecond timescale. [source] Ovule differences between single-kernelled and double-kernelled fruits in almond (Prunus dulcis)ANNALS OF APPLIED BIOLOGY, Issue 3 2000J EGEA Summary In order to detect differences between almond cultivars that commonly produce one or two seeds, we compared ovule sizes and developmental stages at anthesis and three days after anthesis. The results showed that the presence of only small differences in size between primary and secondary ovules during flowering seemed to be a necessary but not sufficient condition for the production of double-kernelled fruits. In contrast, differences in the developmental stage of both ovules did not prevent the production of double kernels. Large differences in ovule size at anthesis or in the following days resulted in fruits with single seeds. The behaviour of the secondary ovules in cultivars producing fruit with single seeds was very different, even in closely related cultivars. The degeneration of the secondary ovule seems to be genetically programmed and follows a genotype-dependent pattern. [source] Structure of rat transthyretin (rTTR) complex with thyroxine at 2.5,Å resolution: first non-biased insight into thyroxine binding reveals different hormone orientation in two binding sitesACTA CRYSTALLOGRAPHICA SECTION D, Issue 8 2001Andrzej Wojtczak The first observation of the unique environment for thyroxine (T4) binding in tetrameric rat transthyretin (rTTR) is reported as determined by X-ray diffraction. These data revealed different modes of hormone binding in the two unique hormone-binding sites in the rat TTR tetramer channel. Differences in the orientation of thyroxine and the position of water molecules in the two binding sites further suggest a mechanism for the docking pathway of the hormone into the channel of TTR. Crystals of the rat transthyretin,thyroxine complex are isomorphous with those reported for apo rTTR and crystallized in the tetragonal space group P43212 with four independent TTR monomeric subunits in the asymmetric part of the crystal lattice. Data were collected to 2.5,Å resolution and the structure was refined to R = 20.9% for 15,384 data in the resolution range 12,2.5,Å. Similar to human TTR, the rat protein is also a 54,000,Da tetramer with four identical polypeptide chains of 127 amino-acid residues. Of the 22 amino-acid residues which differ between the human and rat sequences, none are in the thyroxine-binding domains. Analysis of these structural data reveals that the tertiary structure is similar to that of hTTR, with only small differences in the flexible loop regions on the surface of the structure. Conformational changes of the amino acids in the channel result in a hydrogen-bonded network that connects the two binding domains, in contrast to the hydrogen bonds formed along the tetramer interface in the apo transthyretin structure. These changes suggest a mechanism for the signal transmission between thyroxine-binding domains. [source] | ||||||||||||||||