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Oxidizers

Distribution by Scientific Domains

Life Sciences	45%
Chemistry	30%
Engineering	14%
Earth and Environmental Science	7%

Kinds of Oxidizers

ammonia oxidizer

thermal oxidizer

Selected Abstracts

ChemInform Abstract: Probing the Reactivity of the Potent AgF2 Oxidizer.

CHEMINFORM, Issue 6 2009
Part 2.
Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 200 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a "Full Text" option. The original article is trackable via the "References" option. [source]

Alkali-Dinitramide Salts Part 2: Oxidizers for Special Pyrotechnic Applications

PROPELLANTS, EXPLOSIVES, PYROTECHNICS, Issue 4 2006

Abstract Ammonium dinitramide is planned to be a substitute for commonly used oxidizers in rocket motor compositions. Different teams worldwide have already synthesized alkali salts of dinitramide and several times it was used as an oxidizer for pyrotechnic compositions containing boron as a reducing agent. In this paper the results of a systematic investigation to characterize the pyrotechnic redox systems titanium/potassium dinitramide and titanium/cesium dinitramide are presented and the data are compared. The heats of reaction as well as the burning rates of the redox system titanium/potassium dinitramide are higher than those of the redox system titanium/cesium dinitramide. Both systems show a moderate sensitivity to friction and electrostatic discharges. However the sensitivity of mixtures of both redox systems shows a very high sensitivity to impact. These sensitivities are in the range of pure HMX or pentaerythritol tetranitrate. [source]

Selection of refractory for thermal oxidizers on gas streams containing fluorine

ENVIRONMENTAL PROGRESS & SUSTAINABLE ENERGY, Issue 2 2002
Stanley C. Che
Thermal oxidizers for destruction of fluorine-containing chemicals are typically operated between 1,100° to 1,400° C. Fluorine is converted to hydrogen fluoride (HF) during the combustion process. At high temperatures, HF will react with almost all materials. Proper selection of the refractory material used by the thermal oxidizer is essential for long-term use, and to protect the metal shell from corrosion. Selection criteria should include analysis of chemical composition, physical properties, morphology, and bonding phases. A high alumina brick from a thermal oxidizer was analyzed after it had been in service for one year. The brick surface underwent significant changes of its chemical and micro-structural compositions. Silica in the mullite phase had reacted with HF, leaving only corundum. In the inner part of the brick, both mullite and corundum crystals still existed. Refractory selection guidelines are suggested. [source]

Competition between two nitrite-oxidizing bacterial populations: a model for studying the impact of wastewater treatment plant discharge on nitrification in sediment

FEMS MICROBIOLOGY ECOLOGY, Issue 1 2002
Christine Féray
Abstract Nitrobacter, a ubiquitous nitrite oxidizer in natural and anthropized environments, is commonly studied as the model genus performing the second stage of nitrification. In rivers, wastewater treatment plant discharges may affect the nitrite-oxidizing activity and the responsible genera that are largely associated with sediment. We used a laboratory batch culture approach with Nitrobacter wynogradskyi ssp. agilis strain AG and Nitrobacter hamburgensis strain X14 to characterize the possible stress effect of wastewater effluent on these populations and to study the possible competition between an effluent strain (X14) and a sediment strain (AG) over a 42-day incubation time. Immunofluorescence enumerations of each strain showed that they both survived and settled in the sediment, indicating that there was no significant stress effect due to chemical changes caused by the effluent. The development of the strains' density and activity was directly correlated with the available nitrite concentration. Nevertheless, the potential specific activity was not constant along the so-called mixotrophic (non-limiting nitrite concentration) and heterotrophic (nitrite depletion) conditions. This illustrates the inducibility of the nitrite oxidoreductase and indicates the metabolic versatility of the strains. In our experimental conditions, the preferentially autotrophic AG strain appeared more competitive than the preferentially mixo- or heterotrophic X14 strain, including in heterotrophic environment. [source]

The influence of rotary valve distribution systems on the energetic efficiency of regenerative thermal oxidizers (RTO)

INTERNATIONAL JOURNAL OF ENERGY RESEARCH, Issue 1 2008
Mario Amelio
Abstract On,off valve systems, commonly used in regenerative thermal oxidizer (RTO) plants, generate, during the opening time, a mass flow rate (MFR) which is constant. On the contrary, rotary valve systems, which are increasingly adopted in RTO plants, are characterized by variable MFR profiles. In this work, the energy requirements of two RTO systems, equipped with on,off or rotary valves, were determined using a home-developed numerical code. Energy performances were evaluated by calculating the thermal efficiency and pressure drop within structured or random packed bed RTO systems, at the same mean MFR. The results demonstrated that thermal efficiency was only moderately influenced by the valve system, and is slightly lower for the RTO with on,off valve. On the other hand, the study revealed that energy requirements of all RTO systems were basically unaffected by cycle duration, allowing valve rotational velocity to be freely set to maximize for other technical requirements. On the contrary, pressure drop was greatly influenced by the valve type and increased as variability in MFR function augmented. Moreover, the type of regenerator, structured or random packed bed, affected differently the total energy requirements (basically pumping energy plus auxiliary fuel). Energy requirements of structured and random regenerators were comparable only when volatile organic compounds concentration was lower than typical values encountered in the industrial practise. In other cases, structured regenerators RTO were more competitive. Finally, structured regenerators are usually the best choice when rotating valve distribution systems are adopted. Copyright © 2007 John Wiley & Sons, Ltd. [source]

Chemical effects of CO2 addition to oxidizer and fuel streams on flame structure in H2,O2 counterflow diffusion flames

INTERNATIONAL JOURNAL OF ENERGY RESEARCH, Issue 13 2003
Jeong Park
Abstract Numerical simulation of CO2 addition effects to fuel and oxidizer streams on flame structure has been conducted with detailed chemistry in H2,O2 diffusion flames of a counterflow configuration. An artificial species, which displaces added CO2 in the fuel- and oxidizer-sides and has the same thermochemical, transport, and radiation properties to that of added CO2, is introduced to extract pure chemical effects in flame structure. Chemical effects due to thermal dissociation of added CO2 causes the reduction flame temperature in addition to some thermal effects. The reason why flame temperature due to chemical effects is larger in cases of CO2 addition to oxidizer stream is well explained though a defined characteristic strain rate. The produced CO is responsible for the reaction, CO2+H=CO+OH and takes its origin from chemical effects due to thermal dissociation. It is also found that the behavior of produced CO mole fraction is closely related to added CO2 mole fraction, maximum H mole fraction and its position, and maximum flame temperature and its position. Copyright © 2003 John Wiley & Sons, Ltd. [source]

Determination of Soot Particle Size in a Premixed Flame: a Static and Dynamic Light Scattering Study

PARTICLE & PARTICLE SYSTEMS CHARACTERIZATION, Issue 2 2003
Gert Kroner
Abstract In this contribution we report upon our static and dynamic light scattering experiments to characterize soot particles in flames. We studied sooting laminar premixed flame with acetylene as fuel mixed with air as oxidizer. The air equivalence ratio of the combustion was larger than one. We used a Kaskan type burner with circular geometry and a stabilizing flow of nitrogen around the flame. We focused on the determination of the size of the soot particles in the center of the flame as a function of height above burner. In addition we investigated the influence of the mixing ratio of the gases on the size of the particles. Our results show that static light scattering is better suited than dynamic light scattering for a fast and reliable characterization of soot particles in flames. The latter needs detailed a priori information about the flame to allow the unique determination of sizes from the diffusion measurements. The soot particles grow monotonously with height above burner and with decreasing air equivalence ratio. The aggregates have a fractal dimension lower than two. [source]

Toxic gas release caused by the thermal decomposition of a bulk powder blend containing sodium dichloroisocyanurate

PROCESS SAFETY PROGRESS, Issue 2 2003
Andrew R. Carpenter P.E.
A thermal runaway reaction occurred during the mixing of a batch of a bulk powder that resulted in the production and release of toxic gases. The mixture consisted of an oxidizer (sodium dichloroisocyanurate), some organic compounds, and inert compounds. This toxic release led to the evacuation of the building and resulted in extensive damage to the facility. This was only the fourth time an 1,100-pound batch of this material had been mixed in this equipment. Prior to this production run, the material had been prepared in small batches of 2 to 50 kilograms. Accelerated Rate Calorimetry (ARC) testing had been performed prior to the scale-up to production batches. This paper looks into the root causes of this particular accident and demonstrates how proper analysis of the testing data and other warning signs observed during the bench testing could have revealed the likelihood of this accident. Further, this paper will consider how simple design changes to the manufacturing process resulted in an inherently safer design. [source]

Alkali-Dinitramide Salts Part 2: Oxidizers for Special Pyrotechnic Applications

Acid-Base Interactions in Energetic Materials: I. The Hard and Soft Acids and Bases (HSAB) Principle,Insights to Reactivity and Sensitivity of Energetic Materials

PROPELLANTS, EXPLOSIVES, PYROTECHNICS, Issue 1 2005
Ernst-Christian Koch
Abstract The chemistry of energetic materials can be described applying acid-base reaction formalism. Addressing the HSAB concept, the number of electrons transferred, ,N, in an acid-base reaction, allows for description and prediction of properties of composite and homogeneous materials. At first ,N helps in estimating the rate of reaction of binary systems with either given fuel or oxidizer. Nevertheless ,N is only a relative number thus the range of comparability remains narrow. At second ,N can be used as a measure for the sensitivity of homogeneous explosives. The increased reactivity of hypothetical fragments to recombine in a reaction such as R3C.+.NO2=R3C,NO2 given by ,N correlates very well with experimentally determined reduced impact sensitivity of 1,3,5-trinitrobenzene compounds. On the contrary the rising impact sensitivity of metal azides correlates with rising values of ,N of Mn+/N3, reaction because increased reactivity, that is increased electron transfer from the azide anion to the metal cation triggers formation of the azide radical (.N3). The latter then decomposes rapidly to give dinitrogen. This increased reactivity/sensitivity of metral azides coincides with covalent bonding whereas ionic azides are relatively insensitive. [source]

Thermal Decomposition of Energetic Materials 85: Cryogels of Nanoscale Hydrazinium Diperchlorate in Resorcinol-Formaldehyde

PROPELLANTS, EXPLOSIVES, PYROTECHNICS, Issue 2 2003
Bryce
Abstract The objective of this work was to try to desensitize an energetic material by using sol-gel processing and freeze drying to incorporate the energetic material into the fuel matrix on the nano (or at least submicron) particle size scale. Hydrazinium diperchlorate ([N2H6][ClO4]2 or HP2) and resorcinol-formaldehyde (RF) were chosen as the oxidizer and fuel, respectively. Solid loading up to 88% HP2 was achieved by using the sol gel-to-cryogel method. Various weight percentages of HP2 in RF were characterized by elemental analysis, scanning electron (SEM) and optical microscopy, T-jump/FTIR spectroscopy, DSC, and drop-weight impact. SEM indicated that 20,50,nm diameter HP2 plates aggregated into porous 400,800,nm size clusters. Below 80% HP2 the cryogels are less sensitive to impact than physical mixtures having the same ratios of HP2 and RF. The decomposition temperatures of the cryogels are higher than that of pure HP2, which is consistent with their lower impact sensitivity. The heat of decomposition as measured at a low heating rate increases with increasing percentage of HP2. The cryogels and physical mixtures release similar amounts of energy, but the cryogels exhibit mainly a single exotherm by DSC whereas the physical mixtures showed a two-step energy release. Flash pyrolysis revealed gaseous product ratios suggestive of more energy being released from the cryogels than the physical mixtures. Cryogels also burn faster by visual observation. [source]

In situ measurement of methane fluxes and analysis of transcribed particulate methane monooxygenase in desert soils

ENVIRONMENTAL MICROBIOLOGY, Issue 10 2009
Roey Angel
Summary Aerated soils are a biological sink for atmospheric methane. However, the activity of desert soils and the presence of methanotrophs in these soils have hardly been studied. We studied on-site atmospheric methane consumption rates as well as the diversity and expression of the pmoA gene, coding for a subunit of the particulate methane monooxygenase, in arid and hyperarid soils in the Negev Desert, Israel. Methane uptake was only detected in undisturbed soils in the arid region (,90 mm year,1) and vertical methane profiles in soil showed the active layer to be at 0,20 cm depth. No methane uptake was detected in the hyperarid soils (,20 mm year,1) as well as in disturbed soils in the arid region (i.e. agricultural field and a mini-catchment). Molecular analysis of the methanotrophic community using terminal restriction fragment length polymorphism (T-RFLP) and cloning/sequencing of the pmoA gene detected methanotrophs in the active soils, whereas the inactive ones were dominated by sequences of the homologous gene amoA, coding for a subunit of the ammonia monooxygenase. Even in the active soils, methanotrophs (as well as in situ activity) could not be detected in the soil crust, which is the biologically most important layer in desert soils. All pmoA sequences belonged to yet uncultured strains. Transcript analysis showed dominance of sequences clustering within the JR3, formerly identified in Californian grassland soils. Our results show that although active methanotrophs are prevalent in arid soils they seem to be absent or inactive in hyperarid and disturbed arid soils. Furthermore, we postulate that methanotrophs of the yet uncultured JR3 cluster are the dominant atmospheric methane oxidizers in this ecosystem. [source]

Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): abundance and diversity related to geochemical zonation

ENVIRONMENTAL MICROBIOLOGY, Issue 5 2009
Julie Leloup
Summary In order to better understand the main factors that influence the distribution of sulfate-reducing bacteria (SRB), their population size and their metabolic activity in high- and low-sulfate zones, we studied the SRB diversity in 3- to 5-m-deep sediment cores, which comprised the entire sulfate reduction zone and the upper methanogenic zone. By combining EMA (ethidium monoazide that can only enter damaged/dead cells and may also bind to free DNA) treatment with real-time PCR, we determined the distributions of total intact bacteria (16S rDNA genes) and intact SRB (dsrAB gene), their relative population sizes, and the proportion of dead cells or free DNA with depth. The abundance of SRB corresponded in average to 13% of the total bacterial community in the sulfate zone, 22% in the sulfate,methane transition zone and 8% in the methane zone. Compared with the total bacterial community, there were relatively less dead/damaged cells and free DNA present than among the SRB and this fraction did not change systematically with depth. By DGGE analysis, based on the amplification of the dsrA gene (400 bp), we found that the richness of SRB did not change with depth through the geochemical zones; but the clustering was related to the chemical zonation. A full-length clone library of the dsrAB gene (1900 bp) was constructed from four different depths (20, 110, 280 and 500 cm), and showed that the dsrAB genes in the near-surface sediment (20 cm) was mainly composed of sequences close to the Desulfobacteraceae, including marine complete and incomplete oxidizers such as Desulfosarcina, Desulfobacterium and Desulfococcus. The three other libraries were predominantly composed of Gram-positive SRB. [source]

Multiple bacterial symbionts in two species of co-occurring gutless oligochaete worms from Mediterranean sea grass sediments

ENVIRONMENTAL MICROBIOLOGY, Issue 12 2008
Caroline Ruehland
Summary Gutless oligochaete worms are found worldwide in the pore waters of marine sediments and live in symbiosis with chemoautotrophic sulfur-oxidizing bacteria. In the Mediterranean, two species of gutless oligochaete worms, Olavius algarvensis and O. ilvae, co-occur in sediments around sea grass beds. These sediments have extremely low sulfide concentrations (< 1 ,M), raising the question if O. ilvae, as shown previously for O. algarvensis, also harbours sulfate-reducing symbionts that provide its sulfur-oxidizing symbionts with reduced sulfur compounds. In this study, we used fluorescence in situ hybridization (FISH) and comparative sequence analysis of genes for 16S rRNA, sulfur metabolism (aprA and dsrAB), and autotrophic carbon fixation (cbbL) to examine the microbial community of O. ilvae and re-examine the O. algarvensis symbiosis. In addition to the four previously described symbionts of O. algarvensis, in this study a fifth symbiont belonging to the Spirochaetes was found in these hosts. The symbiotic community of O. ilvae was similar to that of O. algarvensis and also included two gammaproteobacterial sulfur oxidizers and two deltaproteobacterial sulfate reducers, but not a spirochete. The phylogenetic and metabolic similarity of the symbiotic communities in these two co-occurring host species that are not closely related to each other indicates that syntrophic sulfur cycling provides a strong selective advantage to these worms in their sulfide-poor environment. [source]

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

ENVIRONMENTAL MICROBIOLOGY, Issue 5 2008
Maria Tourna
Summary Ammonia oxidation, as the first step in the nitrification process, plays a central role in the global cycling of nitrogen. Although bacteria are traditionally considered to be responsible for ammonia oxidation, a role for archaea has been suggested by data from metagenomic studies and by the isolation of a marine, autotrophic, ammonia-oxidizing, non-thermophilic crenarchaeon. Evidence for ammonia oxidation by non-thermophilic crenarchaea in marine and terrestrial environments is largely based on abundance of bacterial and archaeal ammonia monooxygenase (amo) genes, rather than activity. In this study, we have determined the influence of temperature on the response of ammonia-oxidizing bacteria and archaea in nitrifying soil microcosms using two approaches, involving analysis of transcriptional activity of 16S rRNA genes and of a key functional gene, amoA, which encodes ammonia monooxygenase subunit A. There was little evidence of changes in relative abundance or transcriptional activity of ammonia-oxidizing bacteria during nitrification. In contrast, denaturing gradient gel electrophoresis analysis of crenarchaeal 16S rRNA and crenarchaeal amoA genes provided strong evidence of changes in community structure of active archaeal ammonia oxidizers. Community structure changes were similar during incubation at different temperatures and much of the activity was due to a group of non-thermophilic crenarchaea associated with subsurface and marine environments, rather than soil. The findings suggest a role for crenarchaea in soil nitrification and that further information is required on their biogeography. [source]

Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas

ENVIRONMENTAL MICROBIOLOGY, Issue 5 2007
Niculina Musat
Summary Marine nematode worms without a mouth or functional gut are found worldwide in intertidal sandflats, deep-sea muds and methane-rich pock marks, and morphological studies show that they are associated with endosymbiotic bacteria. While it has been hypothesized that the symbionts are chemoautotrophic sulfur oxidizers, to date nothing is known about the phylogeny or function of endosymbionts from marine nematodes. In this study, we characterized the association between bacterial endosymbionts and the marine nematode Astomonema sp. from coral reef sediments in the Bahamas. Phylogenetic analysis of the host based on its 18S rRNA gene showed that Astomonema sp. is most closely related to non-symbiotic nematodes of the families Linhomoeidae and Axonolaimidae and is not closely related to marine stilbonematinid nematodes with ectosymbiotic sulfur-oxidizing bacteria. In contrast, phylogenetic analyses of the symbionts of Astomonema sp. using comparative 16S rRNA gene sequence analysis revealed that these are closely related to the stilbonematinid ectosymbionts (95,96% sequence similarity) as well as to the sulfur-oxidizing endosymbionts from gutless marine oligochaetes. The closest free-living relatives of these gammaproteobacterial symbionts are sulfur-oxidizing bacteria from the family Chromatiaceae. Transmission electron microscopy and fluorescence in situ hybridization showed that the bacterial symbionts completely fill the gut lumen of Astomonema sp., suggesting that these are their main source of nutrition. The close phylogenetic relationship of the Astomonema sp. symbionts to known sulfur-oxidizing bacteria as well as the presence of the aprA gene, typically found in sulfur-oxidizing bacteria, indicates that the Astomonema sp. symbionts use reduced sulfur compounds as an energy source to provide their hosts with nutrition. [source]

Anaerobic arsenite oxidation by novel denitrifying isolates

ENVIRONMENTAL MICROBIOLOGY, Issue 5 2006
E. Danielle Rhine
Summary Autotrophic microorganisms have been isolated that are able to derive energy from the oxidation of arsenite [As(III)] to arsenate [As(V)] under aerobic conditions. Based on chemical energetics, microbial oxidation of As(III) can occur in the absence of oxygen, and may be relevant in some environments. Enrichment cultures were established from an arsenic contaminated industrial soil amended with As(III) as the electron donor, inorganic C as the carbon source and nitrate as the electron acceptor. In the active enrichment cultures, oxidation of As(III) was stoichiometrically coupled to the reduction of NO3,. Two autotrophic As(III)-oxidizing strains were isolated that completely oxidized 5 mM As(III) within 7 days under denitrifying conditions. Based on 16S rRNA gene sequencing results, strain DAO1 was 99% related to Azoarcus and strain DAO10 was most closely related to a Sinorhizobium. The nitrous oxide reductase (nosZ) and the RuBisCO Type II (cbbM) genes were successfully amplified from both isolates underscoring their ability to denitrify and fix CO2 while coupled to As(III) oxidation. Although limited work has been done to examine the diversity of anaerobic autotrophic oxidizers of As(III), this process may be an important component in the biological cycling of arsenic within the environment. [source]

Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater,marine gradient

ENVIRONMENTAL MICROBIOLOGY, Issue 4 2006
Thomas E. Freitag
Summary To determine whether the distribution of estuarine ammonia-oxidizing bacteria (AOB) was influenced by salinity, the community structure of betaproteobacterial ammonia oxidizers (AOB) was characterized along a salinity gradient in sediments of the Ythan estuary, on the east coast of Scotland, UK, by denaturant gradient gel electrophoresis (DGGE), cloning and sequencing of 16S rRNA gene fragments. Ammonia-oxidizing bacteria communities at sampling sites with strongest marine influence were dominated by Nitrosospira cluster 1-like sequences and those with strongest freshwater influence were dominated by Nitrosomonas oligotropha- like sequences. Nitrosomonas sp. Nm143 was the prevailing sequence type in communities at intermediate brackish sites. Diversity indices of AOB communities were similar at marine- and freshwater-influenced sites and did not indicate lower species diversity at intermediate brackish sites. The presence of sequences highly similar to the halophilic Nitrosomonas marina and the freshwater strain Nitrosomonas oligotropha at identical sampling sites indicates that AOB communities in the estuary are adapted to a range of salinities, while individual strains may be active at different salinities. Ammonia-oxidizing bacteria communities that were dominated by Nitrosospira cluster 1 sequence types, for which no cultured representative exists, were subjected to stable isotope probing (SIP) with 13C-HCO3,, to label the nucleic acids of active autotrophic nitrifiers. Analysis of 13C-associated 16S rRNA gene fragments, following CsCl density centrifugation, by cloning and DGGE indicated sequences highly similar to the AOB Nitrosomonas sp. Nm143 and Nitrosomonas cryotolerans and to the nitrite oxidizer Nitrospira marina. No sequence with similarity to the Nitrosospira cluster 1 clade was recovered during SIP analysis. The potential role of Nitrosospira cluster 1 in autotrophic ammonia oxidation therefore remains uncertain. [source]

Analysis of the distribution and diversity in recent Hawaiian volcanic deposits of a putative carbon monoxide dehydrogenase large subunit gene

ENVIRONMENTAL MICROBIOLOGY, Issue 9 2005
Kari E. Dunfield
Summary A putative carbon monoxide dehydrogenase large subunit gene (BMS putative coxL) was amplified from genomic DNA extracts of four recent (42,300 year old) Hawaiian volcanic deposits by polymerase chain reaction (PCR). Sequence databases derived from clone libraries constructed using PCR products were analysed phylogenetically and statistically. These analyses indicated that each of the deposits supported distinct BMS putative coxL gene assemblages. Statistical analyses also showed that the youngest deposit (42 years old) contained the least diverse sequences (P < 0.05), but that diversity did not vary significantly among three older deposits with ages from about 108,300 years. Although diversity indices did not vary among the older deposits, mismatch analyses suggested population structures increased in complexity with increasing deposit age. At each of the sites, most of the clone sequences appeared to originate from Proteobacteria not currently represented in culture or recognized as CO oxidizers. [source]

Molecular characterization of sulfate-reducing bacteria in a New England salt marsh

ENVIRONMENTAL MICROBIOLOGY, Issue 8 2005
Michele Bahr
Summary Sulfate reduction, mediated by sulfate-reducing bacteria (SRB), is the dominant remineralization pathway in sediments of New England salt marshes. High sulfate reduction rates are associated with the rhizosphere of Spartina alterniflora when plants elongate aboveground. The growth process concurrently produces significant amounts of new rhizome material belowground and the plants leak dissolved organic compounds. This study investigated the diversity of SRB in a salt marsh over an annual growth cycle of S. alterniflora by exploring the diversity of a functional gene, dissimilatory sulfite reductase (dsrAB). Because the dsrAB gene is a key gene in the anaerobic sulfate-respiration pathway, it allows the identification of microorganisms responsible for sulfate reduction. Conserved dsrAB primers in polymerase chain reaction (PCR) generated full-length dsrAB amplicons for cloning and DNA sequence analysis. Nearly 80% of 380 clone sequences were similar to genes from Desulfosarcina and Desulfobacterium species within Desulfobacteraceae. This reinforces the hypothesis that complete oxidizers with high substrate versatility dominate the marsh. However, the phylotypes formed several clades that were distinct from cultured representatives, indicating a greater diversity of SRB than previously appreciated. Several dsrAB sequences were related to homologues from Gram-positive, thermophilic and non-thermophilic Desulfotomaculum species. One dsrAB lineage formed a sister group to cultured members of the delta-proteobacterial group Syntrophobacteraceae. A deeply branching dsrAB lineage was not affiliated with genes from any cultured SRB. The sequence data from this study will allow for the design of probes or primers that can quantitatively assess the diverse range of sulfate reducers present in the environment. [source]

Selection of refractory for thermal oxidizers on gas streams containing fluorine

Impact of five selected xenobiotics on isolated ammonium oxidizers and on nitrifying activated sludge

ENVIRONMENTAL TOXICOLOGY, Issue 4 2006
S. N. Dokianakis
Abstract Sewage treatment plants (STPs) are usual receptors of xenobiotic compounds that have to be cotreated with municipal wastewaters before being discharged to the water environment. The presence of organic contaminants, such as surfactants, polycyclic aromatic hydrocarbons (PAHs), phthalates, and their primary degradation products in the influents of STPs may inhibit irreversibly sensitive biological processes, such as nitrification. The first step of nitrification, i.e., the oxidation of ammonium to nitrite (nitritification), is particularly sensitive. Inhibition of this step under uncontrolled conditions may completely inhibit biological nitrogen removal. The aim of this work was to study the possible inhibitory effect of five selected xenobiotics on (a) a mixed culture of ammonium-oxidizing bacteria isolated from activated sludge and (b) nitrifying activated sludge directly. The xenobiotics that were tested include nonylphenols (NP), nonylphenolethoxylates (NPEO), linear alkylbenzene sulfonates (LAS), di(2-ethylhexyl) phthalate (DEHP), as a representative phthalate ester, and the PAH phenanthrene. Remarkable inhibitory effects for all tested compounds were observed in this study even at xenobiotic concentrations as low as 1 mg/L. The observed inhibition of xenobiotics on nitrifying activated sludge was less pronounced, because of the masking effect exerted by the sludge flocs, but was still significant for many of the tested substances at concentrations up to 10 mg/L. © 2006 Wiley Periodicals, Inc. Environ Toxicol 21: 310,316, 2006. [source]

Nitrifier denitrification can be a source of N2O from soil: a revised approach to the dual-isotope labelling method

EUROPEAN JOURNAL OF SOIL SCIENCE, Issue 5 2010
D. M. Kool
Nitrifier denitrification (i.e. nitrite reduction by ammonia oxidizers) is one of the biochemical pathways of nitrous oxide (N2O) production. It is increasingly suggested that this pathway may contribute substantially to N2O production in soil, the major source of this greenhouse gas. However, although monoculture studies recognize its potential, methodological drawbacks prohibit conclusive proof that nitrifier denitrification occurs in actual soils. Here we suggest and apply a new isotopic approach to identify its presence in soil. In incubation experiments with 12 soils, N2O production was studied using oxygen (O) and nitrogen (N) isotope tracing, accounting for O exchange. Microbial biomass C and N and phospholipid fatty acid (PLFA) patterns were analysed to explain potential differences in N2O production pathways. We found that in at least five of the soils nitrifier denitrification must have contributed to N2O production. Moreover, it may even have been responsible for all NH4+ -derived N2O in most soils. In contrast, N2O as a by-product of ammonia oxidation contributed very little to total production. Microbial biomass C and N and PLFA-distinguished microbial community composition were not indicative of differences in N2O production pathways. Overall, we show that combined O and N isotope tracing may still provide a powerful tool to understand N2O production pathways, provided that O exchange is accounted for. We conclude that nitrifier denitrification can indeed occur in soils, and may in fact be responsible for the greater proportion of total nitrifier-induced N2O production. [source]

Effect of temperature change on the composition of the bacterial and archaeal community potentially involved in the turnover of acetate and propionate in methanogenic rice field soil

FEMS MICROBIOLOGY ECOLOGY, Issue 2 2010
Matthias Noll
Abstract The microbial community structure was investigated together with the path of methane production in Italian rice field soil incubated at moderate (35 °C) and high (45 °C) temperature using terminal restriction fragment length polymorphism and stable isotope fractionation. The structure of both the archaeal and bacterial communities differed at 35 °C compared with 45 °C, and acetoclastic and hydrogenotrophic methanogenesis dominated, respectively. Changing the incubation of the 45 °C soil to different temperatures (25, 30, 35, 40, 45, 50 °C) resulted in a dynamic change of both microbial community structure and stable isotope fractionation. In all treatments, acetate first accumulated and then decreased. Propionate was also transiently produced and consumed. It is noteworthy that acetate was also consumed at thermophilic conditions, although archaeal community composition and stable isotope fractionation indicated that acetoclastic methanogenesis did not operate. Instead, acetate must have been consumed by syntrophic acetate oxidizers. The transient accumulation and subsequent consumption of acetate at thermophilic conditions was specifically paralleled by terminal restriction fragments characteristic for clostridial cluster I, whereas those of clostridial clusters I and III, Acidaminococcaceae and Heliobacteraceae, paralleled the thermophilic turnover of both acetate and propionate. [source]

Links between methane flux and transcriptional activities of methanogens and methane oxidizers in a blanket peat bog

FEMS MICROBIOLOGY ECOLOGY, Issue 1 2010
Thomas E. Freitag
Abstract The relationship between biogeochemical process rates and microbial functional activity was investigated by analysis of the transcriptional dynamics of the key functional genes for methanogenesis (methyl coenzyme M reductase; mcrA) and methane oxidation (particulate methane monooxygenase; pmoA) and in situ methane flux at two peat soil field sites with contrasting net methane-emitting and -oxidizing characteristics. qPCR was used to quantify the abundances of mcrA and pmoA genes and transcripts at two soil depths. Total methanogen and methanotroph transcriptional dynamics, calculated from mcrA and pmoA gene : transcript abundance ratios, were similar at both sites and depths. However, a linear relationship was demonstrated between surface mcrA and pmoA transcript dynamics and surface flux rates at the methane-emitting and methane-oxidizing sites, respectively. Results indicate that methanotroph activity was at least partially substrate-limited at the methane-emitting site and by other factors at the methane-oxidizing site. Soil depth also contributed to the control of surface methane fluxes, but to a lesser extent. Small differences in the soil water content may have contributed to differences in methanogen and methanotroph activities. This study therefore provides a first insight into the regulation of in situ, field-level surface CH4 flux at the molecular level by an accurate reflection of gene : transcript abundance ratios for the key genes in methane generation and consumption. [source]

PCR profiling of ammonia-oxidizer communities in acidic soils subjected to nitrogen and sulphur deposition

FEMS MICROBIOLOGY ECOLOGY, Issue 2 2007
Christoph Stephan Schmidt
Abstract Communities of ammonia-oxidizing bacteria (AOB) were characterized in two acidic soil sites experimentally subjected to varying levels of nitrogen and sulphur deposition. The sites were an acidic spruce forest soil in Deepsyke, Southern Scotland, with low background deposition, and a nitrogen-saturated upland grass heath in Pwllpeiran, North Wales. Betaproteobacterial ammonia-oxidizer 16S rRNA and ammonia monooxygenase (amoA) genes were analysed by cloning, sequencing and denaturing gradient gel electrophoresis (DGGE). DGGE profiles of amoA and 16S rRNA gene fragments from Deepsyke soil in 2002 indicated no effect of nitrogen deposition on AOB communities, which contained both Nitrosomonas europaea and Nitrosospira. In 2003, only Nitrosospira could be detected, and no amoA sequences could be retrieved. These results indicate a decrease in the relative abundance of AOB from the year 2002 to 2003 in Deepsyke soil, which may be the result of the exceptionally low rainfall in spring 2003. Nitrosospira -related sequences from Deepsyke soil grouped in all clusters, including cluster 1, which typically contains only sequences from marine environments. In Pwllpeiran soil, 16S rRNA gene libraries were dominated by nonammonia oxidizers and no amoA sequences were detectable. This indicates that autotrophic AOB play only a minor role in these soils even at high nitrogen deposition. [source]

The influence of synthetic sheep urine on ammonia oxidizing bacterial communities in grassland soil

FEMS MICROBIOLOGY ECOLOGY, Issue 3 2006
Shahid Mahmood
Abstract In grazed, grassland soils, sheep urine generates heterogeneity in ammonia concentrations, with potential impact on ammonia oxidizer community structure and soil N cycling. The influence of different levels of synthetic sheep urine on ammonia oxidizers was studied in grassland soil microcosms. ,Total' and active ammonia oxidizers were distinguished by comparing denaturing gradient gel electrophoresis (DGGE) profiles following PCR and RT-PCR amplification of 16S rRNA gene fragments, targeting DNA and RNA, respectively. The RNA-based approach indicated earlier, more reproducible and finer scale qualitative shifts in ammonia oxidizing communities than DNA-based analysis, but led to amplification of a small number of nonammonia oxidizer sequences. Qualitative changes in RNA-derived DGGE profiles were related to changes in nitrate accumulation. Sequence analysis of excised DGGE bands revealed that ammonia oxidizing communities in synthetic sheep urine-treated soils consisted mainly of Nitrosospira clusters 2, 3 and 4. Nitrosospira cluster 2 increased in relative abundance in microcosms treated with all levels of synthetic sheep urine. Low levels additionally led to increased relative abundance of Nitrosospira cluster 4 and medium and high levels increased relative abundance of cluster 3. Synthetic sheep urine is therefore likely to influence the spatial distribution and composition of ammonia oxidizer communities, with consequent effects on nitrate accumulation. [source]

Nitrate-dependent anaerobic carbon monoxide oxidation by aerobic CO-oxidizing bacteria

FEMS MICROBIOLOGY ECOLOGY, Issue 1 2006
G.M. King
Abstract Two dissimilatory nitrate-reducing (Burkholderia xenovorans LB400 and Xanthobacter sp. str. COX) and two denitrifying isolates (Stappia aggregata IAM 12614 and Bradyrhizobium sp. str. CPP), previously characterized as aerobic CO oxidizers, consumed CO at ecologically relevant levels (<100 ppm) under anaerobic conditions in the presence, but not absence, of nitrate. None of the isolates were able to grow anaerobically with CO as a carbon or energy source, however, and nitrate-dependent anaerobic CO oxidation was inhibited by headspace concentrations >100,1000 ppm. Surface soils collected from temperate, subtropical and tropical forests also oxidized CO under anaerobic conditions with no lag. The observed activity was 25,60% less than aerobic CO oxidation rates, and did not appear to depend on nitrate. Chloroform inhibited anaerobic but not aerobic activity, which suggested that acetogenic bacteria may have played a significant role in forest soil anaerobic CO uptake. [source]

High prokaryote diversity and analysis of community structure in mobile mud deposits off French Guiana: identification of two new bacterial candidate divisions

FEMS MICROBIOLOGY ECOLOGY, Issue 3 2001
Vanessa M. Madrid
Abstract Bacterial and archaeal community compositions in highly mobile nearshore muds typical of the Guiana coastline of South America were examined by sequence analysis of a 16S rDNA clone library. DNA was extracted from a subsurface sediment layer (10,30 cm) collected at a subtidal (,1 m deep) mud wave site between Kourou and Sinnamary, French Guiana. Analysis of 96 non-chimeric sequences showed the majority to be bacteria (98%), that diversity was high with 64 unique sequences, and that proteobacteria were dominant (46%). Two crenarchaeota sequences were found (2%). Bacterial sequences belonged to the Cytophaga-Flexibacter-Bacteroides (18%), Actinobacteria (11.5%), Planctomycetes (6.3%), Cyanobacteria (3.2%), low-GC Gram-positive (1%), ,, , and , subdivisions of Proteobacteria (27%, 16%, and 9%, respectively). Additional bacterial sequences belonged to the candidate division TM6 (1%) and to two newly proposed candidate divisions: KS-A (2%) and KS-B (3%). A sizeable fraction (22%) of sequences from the Kourou,Sinnamary library are normally found in water column populations, reflecting frequent entrainment of suspended debris into physically reworked underlying sediments. Dominant sequences (56%) were related to Gelidibacter algens (Cytophaga-Flexibacter-Bacteroides group), Actinobacteria, Sulfitobacter and Ruegeria spp. (,-proteobacteria), all of which are chemoorganotrophs, consistent with abundant labile organic carbon. The presence of sequences from potential sulfate reducers and sulfide oxidizers suggests the likelihood of sulfur cycling in these sediments, despite the dominance of suboxic (iron-reducing), non-sulfidic diagenetic properties. Rarefaction analysis indicated that bacterial diversity in the French Guiana library is not only unusually high in comparison with other marine sedimentary environments, but among the most diverse of all environments reported to date. [source]