Home About us Contact
|
Home About us Contact | ||
|
|
||
Migration Pathways (migration + pathway)
Selected AbstractsChemInform Abstract: Ionic Conductivity, Structure and Oxide Ion Migration Pathway in Fluorite-Based Bi8La10O27.CHEMINFORM, Issue 2 2010Yuandi Li Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a "Full Text" option. The original article is trackable via the "References" option. [source] Tracking ligand-migration pathways of carbonmonoxy myoglobin in crystals at cryogenic temperaturesACTA CRYSTALLOGRAPHICA SECTION A, Issue 2 2010Ayana Tomita In order to explore the ligand-migration dynamics in myoglobin induced by photodissociation, cryogenic X-ray crystallographic investigations of carbonmonoxy myoglobin crystals illuminated by continuous wave and pulsed lasers at 1,15,kHz repetition rate have been carried out. Here it is shown that this novel method, extended pulsed-laser pumping of carbonmonoxy myoglobin, promotes ligand migration in the protein matrix by crossing the glass transition temperature repeatedly, and enables the visualization of the migration pathway of the photodissociated ligands in native Mb at cryogenic temperatures. It has revealed that the migration of the CO molecule into each cavity induces structural changes of the amino-acid residues around the cavity which result in the expansion of the cavity. The sequential motion of the ligand and the cavity suggests a self-opening mechanism of the ligand-migration channel arising by induced fit. [source] Muscle resident macrophages control the immune cell reaction in a mouse model of notexin-induced myoinjuryARTHRITIS & RHEUMATISM, Issue 1 2010Madly Brigitte Objective Skeletal muscle may be the site of a variety of poorly understood immune reactions, particularly after myofiber injury, which is typically observed in inflammatory myopathies. This study was undertaken to explore both the cell dynamics and functions of resident macrophages and dendritic cells (DCs) in damaged muscle, using a mouse model of notexin-induced myoinjury to study innate immune cell reactions. Methods The myeloid cell reaction to notexin-induced myoinjury was analyzed by microscopy and flow cytometry. Bone marrow (BM) transplantation studies were used to discriminate resident from exudate monocyte/macrophages. Functional tests included cytokine screening and an alloantigenic mixed leukocyte reaction to assess the antigen-presenting cell (APC) function. Selective resident macrophage depletion was obtained by injection of diphtheria toxin (DT) into CD11b,DT receptor,transgenic mice transplanted with DT-insensitive BM. Results The connective tissue surrounding mouse muscle/fascicle tissue (the epimysium/perimysium) after deep muscle injury displayed a resident macrophage population of CD11b+F4/80+CD11c,Ly-6C,CX3CR1, cells, which concentrated first in the epimysium. These resident macrophages were being used by leukocytes as a centripetal migration pathway, and were found to selectively release 2 chemokines, cytokine-induced neutrophil chemoattractant and monocyte chemoattractant protein 1, and to crucially contribute to massive recruitment of neutrophils and monocytes from the blood. Early epimysial inflammation consisted of a predominance of Ly-6ChighCX3CR1lowCD11c, cells that were progressively substituted by Ly-6ClowCX3CR1high cells displaying an intermediate, rather than high, level of CD11c expression. These CD11cintermediate cells were derived from circulating CCR2+ monocytes, functionally behaved as immature APCs in the absence of alloantigenic challenge, and migrated to draining lymph nodes while acquiring the phenotype of mature DCs (CD11c+Ia+CD80+ cells, corresponding to an inflammatory DC phenotype). Conclusion The results in this mouse model show that resident macrophages in the muscle epimysium/perimysium orchestrate the innate immune response to myoinjury, which is linked to adaptive immunity through the formation of inflammatory DCs. [source] Influence of fault map resolution on pore pressure distribution and secondary hydrocarbon migration; Tune area, North SeaGEOFLUIDS (ELECTRONIC), Issue 2 2006A. E. LOTHE Abstract Pressure and hydrocarbon migration modelling was carried out in the Tune Field area, Viking Graben, offshore Norway. The pressures are considered to be controlled by compartments bounded by mapped faults. Two different interpreted fault maps at the top reservoir level (Brent Group) are used as input to the modelling. First, a low-resolution fault map is used, with only the large faults interpreted, and next, both large and small faults are included. The simulations show high overpressures generated in the western area, in the deeper part of the Viking Graben, and hydrostatic in the eastern areas. A sharp transition zone results from using the low-resolution fault map in the simulations. Small N,S striking faults situated in between the wells have to have higher sealing capacity than expected from juxtaposition analysis alone, to be able to match the overpressures measured in well 30/5-2 and 30/8-1S in the Tune Field, and well 30/8-3 east of Tune. The intermediate pressure in the western part is probably related to flow in the deeper parts of the sedimentary column in the compartment, where well 30/8-3 is situated. The secondary oil migration models show that overpressures have major effects on the migration pathways of hydrocarbons. The level of detail in the fault interpretation is important for simulation results, both for pressure distribution and for hydrocarbon migration. [source] Predicting the past distribution of species climatic nichesGLOBAL ECOLOGY, Issue 5 2009David Nogués-Bravo ABSTRACT Predicting past distributions of species climatic niches, hindcasting, by using climate envelope models (CEMs) is emerging as an exciting research area. CEMs are used to examine veiled evolutionary questions about extinctions, locations of past refugia and migration pathways, or to propose hypotheses concerning the past population structure of species in phylogeographical studies. CEMs are sensitive to theoretical assumptions, to model classes and to projections in non-analogous climates, among other issues. Studies hindcasting the climatic niches of species often make reference to these limitations. However, to obtain strong scientific inferences, we must not only be aware of these potential limitations but we must also overcome them. Here, I review the literature on hindcasting CEMs. I discuss the theoretical assumptions behind niche modelling, i.e. the stability of climatic niches through time and the equilibrium of species with climate. I also summarize a set of ,recommended practices' to improve hindcasting. The studies reviewed: (1) rarely test the theoretical assumptions behind niche modelling such as the stability of species climatic niches through time and the equilibrium of species with climate; (2) they only use one model class (72% of the studies) and one palaeoclimatic reconstruction (62.5%) to calibrate their models; (3) they do not check for the occurrence of non-analogous climates (97%); and (4) they do not use independent data to validate the models (72%). Ignoring the theoretical assumptions behind niche modelling and using inadequate methods for hindcasting CEMs may well entail a cascade of errors and naïve ecological and evolutionary inferences. We should also push integrative research lines linking macroecology, physiology, population biology, palaeontology, evolutionary biology and CEMs for a better understanding of niche dynamics across space and time. [source] A REVIEW OF GEOLOGICAL DATA THAT CONFLICT WITH THE PARADIGM OF CATAGENIC GENERATION AND MIGRATION OF OILJOURNAL OF PETROLEUM GEOLOGY, Issue 3 2005H. Hugh Wilson The majority of petroleum geologists today agree that the complex problems that surround the origin, generation, migration and accumulation of hydrocarbons can be resolved by accepting the geochemical conclusion that the process originates by catagenic generation in deeply-buried organically-rich source rocks. These limited source rock intervals are believed to expel hydrocarbons when they reach organic maturity in oil kitchens. The expelled oil and gas then follow migration pathways to traps at shallower levels. However, there are major geological obstacles that cast doubt upon this interpretation. The restriction of the source rock to a few organically rich levels in a basin forces the conclusion that the basin plumbing system is leaky and allows secondary horizontal and vertical migration through great thicknesses of consolidated sedimentary rocks in which there are numerous permeability barriers that are known to effectively prevent hydrocarbon escape from traps. The sourcing of lenticular traps points to the enclosing impermeable envelope as the logical origin of the trapped hydrocarbons. The lynch-pin of the catagenic theory of hydrocarbon origin is the expulsion mechanism from deeply-buried consolidated source rock under high confining pressures. This mechanism is not understood and is termed an "enigma". Assuming that expulsion does occur, the pathways taken by the hydrocarbons to waiting traps can be ascertained by computer modelling of the basin. However, subsurface and field geological support for purported migration pathways has yet to be provided. Many oilfield studies have shown that oil and gas are preferentially trapped in synchronous highs that were formed during, or very shortly after, the deposition of the charged reservoir. An unresolved problem is how catagenically generated hydrocarbons, expelled during a long-drawn-out maturation period, can have filled synchronous highs but have avoided later traps along the assumed migration pathways. From many oilfield studies, it has also been shown that the presence of hydrocarbons inhibits diagenesis and compaction of the reservoir rock. This "Füchtbauer effect" points to not only the early charging of clastic and carbonate reservoirs, but also to the development of permeability barriers below the early-formed accumulations. These barriers would prevent later hydrocarbon additions during the supposed extended period of expulsion from an oil kitchen. Early-formed traps that have been sealed diagenetically will retain their charge even if the trap is opened by later structural tilting. Diagenetic traps have been discovered in clastic and carbonate provinces but their recognition as viable exploration targets is discouraged by present-day assumptions of late hydrocarbon generation and a leaky basin plumbing system. Because there are so many geological realities that cast doubt upon the assumptions that devolve from the paradigm of catagenic generation, the alternative concept of early biogenic generation and accumulation of immature oil, with in-reservoir cracking during burial, is again worthy of serious consideration. This concept envisages hydrocarbon generation by bacterial activity in many anoxic environments and the charging of synchronous highs from adjacent sources. The resolution of the fundamental problem of hydrocarbon generation and accumulation, which is critical to exploration strategies, should be sought in the light of a thorough knowledge of the geologic factors involved, rather than by computer modelling which may be guided by questionable geochemical assumptions. [source] CO migration pathways in cytochrome P450cam studied by molecular dynamics simulationsPROTEIN SCIENCE, Issue 5 2007Liliane Mouawad Abstract Previous laser flash photolysis investigations between 100 and 300 K have shown that the kinetics of CO rebinding with cytochrome P450cam(camphor) consist of up to four different processes revealing a complex internal dynamics after ligand dissociation. In the present work, molecular dynamics simulations were undertaken on the ternary complex P450cam(cam)(CO) to explore the CO migration pathways, monitor the internal cavities of the protein, and localize the CO docking sites. One trajectory of 1 nsec with the protein in a water box and 36 trajectories of 1 nsec in the vacuum were calculated. In each trajectory, the protein contained only one CO ligand on which no constraints were applied. The simulations were performed at 200, 300, and 320 K. The results indicate the presence of seven CO docking sites, mainly hydrophobic, located in the same moiety of the protein. Two of them coincide with xenon binding sites identified by crystallography. The protein matrix exhibits eight persistent internal cavities, four of which corresponding to the ligand docking sites. In addition, it was observed that water molecules entering the protein were mainly attracted into the polar pockets, far away from the CO docking sites. Finally, the identified CO migration pathways provide a consistent interpretation of the experimental rebinding kinetics. [source] Tectonic,Hydrocarbon Accumulation of Laoyemiao Region in the Nanpu Sag, Bohai Bay BasinACTA GEOLOGICA SINICA (ENGLISH EDITION), Issue 5 2009Cuimei ZHANG Abstract: This paper aims to gain insight into Laoyemiao (LYM) tectonic features and utilizes the tectonic,hydrocarbon accumulation model by integrated analysis tectonic controls on suitable reservoirs, trap styles, and hydrocarbon migration. On the basis of 3-D seismic data interpretation and the Xi'nanzhuang (XNZ) Fault geometry analysis, it has been assessed that the LYM tectonics is essentially a transverse anticline produced by flexure of the XNZ Fault surface and superimposed by Neocene north-east-trending strike-slip faults. Transverse anticline is found to exert controls both on major sediment transportation pathways and sedimentary facies distribution. Fan-delta plains that accumulated on the anticline crest near the XNZ Fault scrap and fan-delta front on the anticline front and the upper part of both limbs slumps on synclines and the Linque subsag. In combination with the reservoir properties, suitable reservoirs are predicted in the subfacies of subaqueous distributary channel and mouth bar deposited on the anticline crest. The LYM-faulted anticline accounts for the following trap groups: faulted-block and anticline-dominated trap, fault-dominated traps, and combined and stratigraphic traps. Evidence from biomarkers of crude oil and hydrocarbon-filling period simultaneous, or a little later to the strike-slip fault activity, reveal that the strike-slip faults penetrating into the deep source rock, by connecting with shallow reservoirs, provide the major hydrocarbon migration pathways. [source] Accumulation Mechanisms and Evolution History of the Giant Puguang Gas Field, Sichuan Basin, ChinaACTA GEOLOGICA SINICA (ENGLISH EDITION), Issue 1 2009Fang HAO Abstract: Solid bitumens were found throughout the carbonate reservoirs in the Puguang gas field, the largest gas field so far found in marine carbonates in China, confirming that the Puguang gas field evolved from a paleo-oil reservoir. The fluid conduit system at the time of intensive oil accumulation in the field was reconstructed, and petroleum migration pathways were modeled using a 3-D model and traced by geochemical parameters. The forward modeling and inversion tracing coincided with each other and both indicated that oils accumulated in the Puguang-Dongyuezhai structure originated from a generative kitchen to the northwest of the Puguang gas field. The deposition of organic-rich Upper Permian source rocks dominated by sapropelic organic matter in the Northeast Sichuan Basin, the development of fluid conduit system that was vertically near-source rock and laterally near-generative kitchen, and the focusing of oils originated from a large area of the generative kitchen, were the three requirements for the formation of the giant paleo-oil reservoir from which the giant Puguang gas field evolved. The Puguang gas field had experienced a three-stage evolution. The post-accumulation processes, especially the organic-inorganic interaction in the hydrocarbon-water-rock system, had not only profoundly altered the composition and characteristics of the petroleum fluids, but also obviously changed the physicochemical conditions in the reservoir and resulted in complicated precipitation and solution of carbonate minerals. [source] Lithium Ion Motion in a Hybrid Polymer: Confirmation of a Decoupled PolyelectrolyteCHEMPHYSCHEM, Issue 12 2007Flavio L. Souza Dr. Lithium ion migration pathways in a hybrid matrix, counterions, and active sites were identified and understanding gained using Fourier-Transform infrared (FTIR) spectroscopy (see image). [source] | |||||||||||||