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Microbial Cultures (microbial + culture)
Kinds of Microbial Cultures Selected AbstractsPhytase-producing bacteria in the digestive tracts of some freshwater fishAQUACULTURE RESEARCH, Issue 3 2009Tanami Roy Abstract Isolation and enumeration of phytase-producing bacterial flora in the foregut and hindgut regions of the gastrointestinal tracts of 10 culturable freshwater teleosts of different feeding habits, namely rohu (Labeo rohita), catla (Catla catla), mrigal (Cirrhinus mrigala), bata (Labeo bata), kalbasu (Labeo calbasu), Nile tilapia (Oreochromis niloticus), climbing perch (Anabas testudineus), common carp (Cyprinus carpio), silver carp (Hypophthalmichthys molitrix) and grass carp (Ctenopharyngodon idella), have been carried out. Microbial culture of the gut mucosa on selected nutrient media following the enrichment culture technique was performed for bacterial isolation. The bacterial isolates were screened on the basis of their enzyme-producing ability. The bacterial population on the tryptone soya agar (TSA) plate was maximum in the hindgut region of bata, followed by mrigal and minimum in the foregut region of Nile tilapia. In modified phytase screening medium (MPSM), phytase-producing strains were recorded at higher densities in the foregut region of mrigal and grass carp and minimum in the foregut region of bata. In case of the hindgut, maximum phytase-producing strains were present in grass carp and mrigal and minimum in rohu. In general, in MPSM, the bacterial population was lower in the hindgut region of all the 10 species of fish examined. The phytase-producing ability of the selected 31 strains (16 from the foregut and 15 from the hindgut region) was determined by clearing zones on phytate-containing plates. Among these isolates, 22 strains (12 from the foregut and 10 from the hindgut region) were selected as potent phytase producers according to a quantitative enzyme assay. The highest phytase activity was observed in the bacterial strains LF1 and LH1 isolated from the fore and the hindgut regions of rohu respectively. Both the strains were identified as Bacillus licheniformis on the basis of phenotypic characteristics as well as 16S rDNA sequence analysis. [source] Influence of heavy metals on microbial growth kinetics including lag time: Mathematical modeling and experimental verification,ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 10 2009S. Sevinç, engör Abstract Heavy metals can significantly affect the kinetics of substrate biodegradation and microbial growth, including lag times and specific growth rates. A model to describe microbial metabolic lag as a function of the history of substrate concentration has been previously described by Wood et al. (Water Resour Res 31:553,563) and Ginn (Water Resour Res 35:1395,1408). In the present study, this model is extended by including the effect of heavy metals on metabolic lag by developing an inhibitor-dependent functional to account for the metabolic state of the microorganisms. The concentration of the inhibiting metal is explicitly incorporated into the functional. The validity of the model is tested against experimental data on the effects of zinc on Pseudomonas species isolated from Lake Coeur d'Alene sediments, Idaho, USA, as well as the effects of nickel or cobalt on a mixed microbial culture collected from the aeration tank of a wastewater treatment plant in Athens, Greece. The simulations demonstrate the ability to incorporate the effect of metals on metabolism through lag, yield coefficient, and specific growth rates. The model includes growth limitation due to insufficient transfer of oxygen into the growth medium. [source] Development of a simulated earthworm gut for determining bioaccessible arsenic, copper, and zinc from soil,ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 7 2009Wai K. Ma Abstract Soil physicochemical characteristics and contamination levels alter the bioavailability of metals to terrestrialinvertebrates. Current laboratory-derived benchmark concentrations used to estimate risk do not take into account site-specific conditions, such as contaminant sequestration, and site-specific risk assessment requires a battery of time-consuming and costly toxicity tests. The development of an in vitro simulator for earthworm bioaccessibility would significantly shorten analytical time and enable site managers to focus on areas of greatest concern. The simulated earthworm gut (SEG) was developed to measure the bioaccessibility of metals in soil to earthworms by mimicking the gastrointestinal fluid composition of earthworms. Three formulations of the SEG (enzymes, microbial culture, enzymes and microbial culture) were developed and used to digest field soils from a former industrial site with varying physicochemical characteristics and contamination levels. Formulations containing enzymes released between two to 10 times more arsenic, copper, and zinc from contaminated soils compared with control and 0.01 M CaCl2 extractions. Metal concentrations in extracts from SEG formulation with microbial culture alone were not different from values for chemical extractions. The mechanism for greater bioaccessible metal concentrations from enzyme-treated soils is uncertain, but it is postulated that enzymatic digestion of soil organic matter might release sequestered metal. The relevance of these SEG results will need validation through further comparison and correlation with bioaccumulation tests, alternative chemical extraction tests, and a battery of chronic toxicity tests with invertebrates and plants. [source] Experimental and neural model analysis of styrene removal from polluted air in a biofilterJOURNAL OF CHEMICAL TECHNOLOGY & BIOTECHNOLOGY, Issue 7 2009Eldon R. Rene Abstract BACKGROUND: Biofilters are efficient systems for treating malodorous emissions. The mechanism involved during pollutant transfer and subsequent biotransformation within a biofilm is a complex process. The use of artificial neural networks to model the performance of biofilters using easily measurable state variables appears to be an effective alternative to conventional phenomenological modelling. RESULTS: An artificial neural network model was used to predict the extent of styrene removal in a perlite-biofilter inoculated with a mixed microbial culture. After a 43 day biofilter acclimation period, styrene removal experiments were carried out by subjecting the bioreactor to different flow rates (0.15,0.9 m3 h,1) and concentrations (0.5,17.2 g m,3), that correspond to inlet loading rates up to 1390 g m,3 h,1. During the different phases of continuous biofilter operation, greater than 92% styrene removal was achievable for loading rates up to 250 g m,3 h,1. A back propagation neural network algorithm was applied to model and predict the removal efficiency (%) of this process using inlet concentration (g m,3) and unit flow (h,1) as input variables. The data points were divided into training (115 × 3) and testing set (42 × 3). The most reliable condition for the network was selected by a trial and error approach and by estimating the determination coefficient (R2) value (0.98) achieved during prediction of the testing set. CONCLUSION: The results showed that a simple neural network based model with a topology of 2,4,1 was able to efficiently predict the styrene removal performance in the biofilter. Through sensitivity analysis, the most influential input parameter affecting styrene removal was ascertained to be the flow rate. Copyright © 2009 Society of Chemical Industry [source] Resistance monitoring of aluminum plates to microbiologically influenced corrosion using FFT impedance spectroscopy methodsMATERIALS AND CORROSION/WERKSTOFFE UND KORROSION, Issue 7 2006P. Norouzi Abstract It is well know that formation of a passive oxide film on aluminum can enhance its corrosion resistance. However, microbiologically species are able to damage this film. Microbial adhesion is widely accepted as important stage prior to the induction or initiation of biocorrosion. Pseudomonas aeruginosa and Cladosprioum sp. have been commonly associated with the microbiologically influenced corrosion (MIC) of aluminum and its alloys. In this study, the effect of an organic dye (Quinizarin), on the resistance of aluminum plates to MIC has been investigated by some corrosion monitoring methods such as FFT impedance spectroscopy, cyclic voltammetry and SEM (scanning electron microscopy). In this work, the surface of aluminum plates were changed after exposing them (five types: only polished, anodized, anodized and colored, anodized and colored and sealed) to Pseudomonas aeuroginosa in ASW (artificial sea water) as a microbial culture. The results showed that, the mentioned color caused a decrease in the growth of bacteria, because the color acts a protected layer on the surface of aluminum. This characteristic can reduce intensity of biocorrosion on aluminum plates, so the anodized and colored and sealed plates have the most resistance to MIC, and it can be shown and proven by these techniques which are mentioned above. [source] Factors controlling the carbon isotope fractionation of tetra- and trichloroethene during reductive dechlorination by Sulfurospirillum ssp. and Desulfitobacterium sp. strain PCE-SFEMS MICROBIOLOGY ECOLOGY, Issue 1 2007Danuta Cichocka Abstract Carbon stable isotope fractionation of tetrachloroethene (PCE) and trichloroethene (TCE) was investigated during reductive dechlorination. Growing cells of Sulfurospirillum multivorans, Sulfurospirillum halorespirans, or Desulfitobacterium sp. strain PCE-S, the respective crude extracts and the abiotic reaction with cyanocobalamin (vitamin B12) were used. Fractionation of TCE (,C=1.0132,1.0187) by S. multivorans was more than one order of magnitude higher than values previously observed for tetrachloroethene (PCE) (,C=1.00042,1.0017). Similar differences in fractionation were observed during reductive dehalogenation by the close relative S. halorespirans with ,C=1.0046,1.032 and ,C=1.0187,1.0229 for PCE and TCE respectively. TCE carbon isotope fractionation (,C=1.0150) by the purified PCE-reductive dehalogenase from S. multivorans was more than one order of magnitude higher than fractionation of PCE (,C=1.0017). Carbon isotope fractionation of TCE by Desulfitobacterium sp. strain PCE-S (,C=1.0109,1.0122) as well as during the abiotic reaction with cyanocobalamin (,C=1.0154) was in a similar range to previously reported values for fractionation by mixed microbial cultures. In contrast with previous results with PCE, no effects due to rate limitations, uptake or transport of the substrate to the reactive site could be observed during TCE dechlorination. Our results show that prior to a mechanistic interpretation of stable isotope fractionation factors it has to be carefully verified how other factors such as uptake or transport affect the isotope fractionation during degradation experiments with microbial cultures. [source] Unravelling the microbial role in ooid formation , results of an in situ experiment in modern freshwater Lake Geneva in SwitzerlandGEOBIOLOGY, Issue 4 2008K. PLEE ABSTRACT The microbial role in the formation of the cortex of low-Mg calcite freshwater ooids in western part of Lake Geneva in Switzerland has been suggested previously, but not demonstrated conclusively. Early work mostly concentrated in hypersaline milieus, and hence little is known about their genesis in freshwater environments. We designed an in situ experiment to mimic the natural process of low-Mg calcite precipitation. A special device was placed in the ooid-rich bank of the lake. It contained frosted glass (SiO2) slides, while quartz (SiO2) is the most abundant mineral composition of ooid nuclei that acted as artificial substrates to favour microbial colonization. Microscopic inspection of the slides revealed a clear seasonal pattern of carbonate precipitates, which were always closely associated with biofilms that developed on the surface of the frosted slides containing extracellular polymeric substance, coccoid and filamentous cyanobacteria, diatoms and heterotrophic bacteria. Carbonate precipitation peaks during early spring and late summer, and low-Mg calcite crystals mostly occur in close association with filamentous and coccoid cyanobacteria (e.g. Tolypothrix, Oscillatoria and Synechococcus, Anacystis, respectively). Further scanning electron microscope inspection of the samples revealed low-Mg calcite with crystal forms varying from anhedral to euhedral rhombohedra, depending on the seasons. Liquid cultures corroborate the in situ observations and demonstrate that under the same physicochemical conditions the absence of biofilms prevents the precipitation of low-Mg calcite crystals. These results illustrate that biofilms play a substantial role in low-Mg calcite ooid cortex formation. It further demonstrates the involvement of microbes in the early stages of ooid development. Combined with ongoing microbial cultures under laboratory-controlled conditions, the outcome of our investigation favoured the hypothesis of external microbial precipitation of low-Mg calcite as the main mechanism involved in the early stage of ooid formation in freshwater Lake Geneva. [source] Microbial competition: Study of global branching phenomenaAICHE JOURNAL, Issue 2 2000Abdelhamid Ajbar The stability characteristics of a bioreactor with cell recycle involving the competition between microbial cultures are investigated. The unstructured model, based on Andrew's inhibitory kinetics, involves the pure and simple competition between two microorganisms for a single pollutant. The singularity theory used for this study allows an in-depth analysis of both the static and dynamic bifurcation mechanisms occurring in the system. The hysteresis with five solutions is the highest singularity the system can exhibit. With inhibitory kinetic expressions, the model can also predict self-sustained oscillations for a wide range of parameters. The analysis of clean feed conditions shows that the model cannot exhibit periodic behavior regardless of the growth kinetics model. Analytical criteria are also derived for the coexistence of the competing cultures and for the prevention of wash-out conditions. The stability characteristics for Monod kinetics, derived as a limiting case of the inhibitory kinetic expressions, are incorporated in the general framework offered by the singularity theory. [source] Application of pure and mixed probiotic lactic acid bacteria and yeast cultures for oat fermentationJOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 12 2005Associate Professor Dr Angel Angelov Abstract Fermentation of a prebiotic containing oat substrate with probiotic lactic acid bacteria and yeast strains is an intriguing approach for the development of new synbiotic functional products. This approach was applied in the present work by using pure and mixed microbial cultures to ferment a heat-treated oat mash. Results show that the strains studied were appropriate for oat fermentation and the process could be completed for 6,10 h depending on the strain. The viable cell counts achieved within this time were above the required levels of 106,107 cfu ml,1 for probiotic products. Both single lactic acid bacteria strains and mixed cultures of the same strains with yeast were found suitable for oat fermentation. However, the pure LAB cultures attributed better flavour and shelf life of the oat drinks. The content of the prebiotic oat component beta-glucan remained within 0.30,0.36% during fermentation and storage of the drinks obtained with each of the strains used. Thus, these products would contribute diet with the valuable functional properties of beta-glucan. Also, the viability of pure and mixed cultures in the oat products was good: levels of cell counts remained above the required numbers for probiotic products throughout the estimated shelf-life period. Copyright © 2005 Society of Chemical Industry [source] Influence of feeding strategies of mixed microbial cultures on the chemical composition and microstructure of copolyesters P(3HB-co-3HV) analyzed by NMR and statistical analysisMAGNETIC RESONANCE IN CHEMISTRY, Issue 6 2009G. Ivanova Abstract NMR spectroscopy was applied for quantitative and qualitative characterization of the chemical composition and microstructure of a series of poly(3-hydroxybutyrate- co -3-hydoxyvalerate) copolymers, P(3HB- co -3HV), synthesized by mixed microbial cultures at several different feeding strategies. The monomer sequence distribution of the bacterially synthesized P(3HB- co -3HV) was defined by analysis of their high-resolution 1D 13C NMR and 2D 1H/13C HSQC and 1H/13C HMBC NMR spectra. The results were verified by employment of statistical methods and suggest a block copolymer microstructure of the P(3HB- co -3HV) copolymers studied. Definitive distinction between block copolymers or a mixture of random copolymers could not be achieved. NMR spectral analysis indicates that the chemical composition and microstructure of the copolymers can be tuned by choosing a correct feeding strategy. Copyright © 2009 John Wiley & Sons, Ltd. [source] Early intervention in CF: How to monitor the effectPEDIATRIC PULMONOLOGY, Issue 11 2007Giora Weiser MD Abstract Early and aggressive therapy already at the stage when no apparent signs of significant lung disease are detectable, may delay the development and progression of cystic fibrosis (CF). Identification of markers for early pulmonary disease in CF is crucial to monitor adherence to preventive therapy and determine its success. Currently several surrogate markers are available that are used in both the decision making and evaluation of the timing and success of early intervention namely, pulmonary function tests (PFT), microbial cultures, imaging techniques, inflammatory markers, serological markers, and several general signs such as exacerbation rate and nutritional status. This review will present the current status and discuss the significance of their application as well as their limitations for patients with CF and no apparent pulmonary disease. 2007;42:1002,1007. © 2007 Wiley-Liss, Inc. [source] High-level production of amorpha-4,11-diene in a two-phase partitioning bioreactor of metabolically engineered Escherichia coliBIOTECHNOLOGY & BIOENGINEERING, Issue 4 2006Jack D. Newman Abstract Reconstructing synthetic metabolic pathways in microbes holds great promise for the production of pharmaceuticals in large-scale fermentations. By recreating biosynthetic pathways in bacteria, complex molecules traditionally harvested from scarce natural resources can be produced in microbial cultures. Here we report on a strain of Escherichia coli containing a heterologous, nine-gene biosynthetic pathway for the production of the terpene amorpha-4,11-diene, a precursor to the anti-malarial drug artemisinin. Previous reports have underestimated the productivity of this strain due to the volatility of amorphadiene. Here we show that amorphadiene evaporates from a fermentor with a half-life of about 50 min. Using a condenser, we take advantage of this volatility by trapping the amorphadiene in the off-gas. Amorphadiene was positively identified using nuclear magnetic resonance spectroscopy and determined to be 89% pure as collected. We captured amorphadiene as it was produced in situ by employing a two-phase partitioning bioreactor with a dodecane organic phase. Using a previously characterized caryophyllene standard to calibrate amorphadiene production and capture, the concentration of amorphadiene produced was determined to be 0.5 g/L of culture medium. A standard of amorphadiene collected from the off-gas showed that the caryophyllene standard overestimated amorphadiene production by approximately 30%. © 2006 Wiley Periodicals, Inc. [source] Effect of the applied organic load rate on biodegradable polymer production by mixed microbial cultures in a sequencing batch reactorBIOTECHNOLOGY & BIOENGINEERING, Issue 1 2006Davide Dionisi Abstract This article studies the operation of a new process for the production of biopolymers (polyhydroxyalkanoates, PHAs) at different applied organic load rates (OLRs). The process is based on the aerobic enrichment of activated sludge to obtain mixed cultures able to store PHAs at high rates and yields. A mixture of acetic, lactic, and propionic acids at different concentrations (in the range 8.5,31.25 gCOD/L) was fed every 2 h in a sequencing batch reactor (SBR). The resulting applied OLR was in the range 8.5,31.25 gCOD/L/day. Even though, as expected, the increase in the OLR caused an increase in biomass concentration (up to about 8.7 g COD/L), it also caused a relevant decrease of maximal polymer production rate. This decrease in polymer production rate was related to the different extent of "feast and famine" conditions, as function of the applied OLR and of the start-up conditions. As a consequence the best performance of the process was obtained at an intermediate OLR (20 gCOD/L/day) where both biomass productivity and PHA storage were high enough. However, at this high OLR the process was unstable and sudden decrease of performance was also observed. The sludge characterized by the highest PHA storage response was investigated by 16S rDNA clone library. The clone library contained sequences mostly from PHA producers (e.g., Alcaligenes and Comamonas genera); however many genera and among them, one of the dominant (Thauera), were never described before in relation to PHA storage response. © 2005 Wiley Periodicals, Inc. [source] On-line adaptive metabolic flux analysis: Application to PHB production by mixed microbial culturesBIOTECHNOLOGY PROGRESS, Issue 2 2009João Dias Abstract In this work, an algorithm for on-line adaptive metabolic flux analysis (MFA) is proposed and applied to polyhydroxybutyrate (PHB) production by mixed microbial cultures (MMC). In this process, population dynamics constitutes an important source of perturbation to MFA calculations because some stoichiometric and energetic parameters of the underlying metabolic network are continuously changing over time. The proposed algorithm is based on the application of the observer-based estimator (OBE) to the central MFA equation, whereby the role of the OBE is to force the accumulation of intracellular metabolites to converge to zero by adjusting the values of unknown network parameters. The algorithm was implemented in a reactor equipped with on-line analyses of dissolved oxygen and carbon dioxide through respirometric and titrimetric measurements. The oxygen and carbon dioxide fluxes were measured directly, whereas acetate, PHB, and sludge production fluxes were estimated indirectly using a projection of latent structures model calibrated a priori with off-line measurements. The algorithm was implemented in a way that the network parameters associated with biosynthesis were adjusted on-line. The algorithm proofed to converge exponentially with the steady state error always below 1 mmol/L. The estimated fluxes passed the consistency index test for experimental error variances as low as 1%. The comparison of measured and estimated respiratory coefficient and of the theoretical and estimated yield of sludge on acetate further confirmed the metabolic consistency of the parameters that were estimated on-line. © 2009 American Institute of Chemical Engineers Biotechnol. Prog., 2009 [source] | ||||||||||||||||