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Mechanistic Relationships (mechanistic + relationships)

Distribution by Scientific Domains

Life Sciences	50%

Selected Abstracts

The heel and toe of the cell's foot: A multifaceted approach for understanding the structure and dynamics of focal adhesions

CYTOSKELETON, Issue 11 2009
Haguy Wolfenson
Abstract Focal adhesions (FAs) are large clusters of transmembrane receptors of the integrin family and a multitude of associated cytoplasmic "plaque" proteins, which connect the extracellular matrix-bound receptors with the actin cytoskeleton. The formation of nearly stationary FAs defines a boundary between the dense and highly dynamic actin network in lamellipodium and the sparser and more diverse cytoskeletal organization in the lamella proper, creating a template for the organization of the entire actin network. The major "mechanical" and "sensory" functions of FAs; namely, the nucleation and regulation of the contractile, myosin-II-containing stress fibers and the mechanosensing of external surfaces depend, to a major extent, on the dynamics of molecular components within FAs. A central element in FA regulation concerns the positive feedback loop, based on the most intriguing feature of FAs; that is, their dependence on mechanical tension developing by the growing stress fibers. FAs grow in response to such tension, and rapidly disassemble upon its relaxation. In this article, we address the mechanistic relationships between the process of FA development, maturation and dissociation and the dynamic molecular events, which take place in different regions of the FA, primarily in the distal end of this structure (the "toe") and the proximal "heel," and discuss the central role of local mechanical forces in orchestrating the complex interplay between FAs and the actin system. Cell Motil. Cytoskeleton 66: 1017,1029, 2009. © 2009 Wiley-Liss, Inc. [source]

Variations in ,-Hexachlorocyclohexane enantiomer ratios in relation to microbial activity in a temperate estuary

ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 7 2003
Tiruponithura V. Padma
Abstract Changes in the enantiomer ratios (ERs) of chiral pollutants in the environment are often considered evidence of biological alteration despite the lack of data on causal or mechanistic relationships between microbial parameters and ER values. Enantiomer ratios that deviate from 1:1 in the environment provide evidence for the preferential microbial degradation of one enantiomer, whereas ER values equal to 1 provide no evidence for microbial degradation and may mistakenly be interpreted as evidence that biodegradation is not important. In an attempt to link biological and geochemical information related to enantioselective processes, we measured the ERs of the chiral pesticide ,-hexachlorocyclohexane (,-HCH) and bacterial activity (normalized to abundance) in surface waters of the York River (VA, USA) bimonthly throughout one year. Despite lower overall ,-HCH concentrations, ,-HCH ER values were unexpectedly close to 1:1 in the freshwater region of the estuary with the highest bacterial activity. In contrast, ER values were nonracemic (ER , 1) and ,-HCH concentrations were significantly higher in the higher salinity region of the estuary, where bacterial activity was lower. Examination of these data may indicate that racemic environmental ER values are not necessarily reflective of a lack of biodegradation or recent input into the environment, and that nonenantioselective biodegradation may be important in certain areas. [source]

Expression profiles and clinical relationships of ID2, CDKN1B, and CDKN2A in primary neuroblastoma

GENES, CHROMOSOMES AND CANCER, Issue 4 2004
Sigrun Gebauer
Despite considerable research into the etiology of neuroblastoma, the molecular basis of this disease has remained elusive. In contrast to the absence of expression of the known tumor suppressor CDKN2A (also known as p16 and INK4A) in a wide variety of tumor types we have found in previous studies that CDKN2A protein is paradoxically highly expressed in many advanced stage neuroblastomas and unrelated to RB1 status. In the present study, we sought to identify the mechanistic relationships that might influence CDKN2A expression and negate its influence on tumor cell proliferation. In this regard, we examined the role of the tumor-suppressor gene CDKN1B (also known as p27 and Kip1) and the oncogene ID2 in relationship to CDKN2A expression, MYCN amplification, and neuroblastoma pathogenesis in 17 neuroblastoma cell lines and 129 samples of primary tumors of all stages. All neuroblastoma cell lines expressed the ID2 transcript and protein. However, although the majority of primary neuroblastomas also expressed the ID2 transcript, expression of the ID2 protein was undetectable or only barely detectable, regardless of transcript expression. In both cell lines and primary tumors, ID2 expression was independent of both CDKN2A and MYCN expression. In primary neuroblastomas, CDKN1B protein was expressed in significantly fewer advanced-stage neuroblastomas than early-stage neuroblastomas, but its expression had no relationship with CDKN2A expression or MYCN amplification. We concluded that the paradoxical expression of CDKN2A in neuroblastoma cannot be explained by inactivation of the tumor-suppressor gene CDKN1B or overexpression of the oncogene ID2. We further concluded that ID2 is not a target of MYCN regulation nor is it a prognostic factor for neuroblastoma. Finally, the loss of CDKN1B in advanced-stage neuroblastoma suggests this protein may play a role in the neuroblastoma disease process. © 2004 Wiley-Liss, Inc. [source]

Soil moisture dynamics in an eastern Amazonian tropical forest

HYDROLOGICAL PROCESSES, Issue 12 2006
Rogério D. Bruno
Abstract We used frequency-domain reflectometry to make continuous, high-resolution measurements for 22 months of the soil moisture to a depth of 10 m in an Amazonian rain forest. We then used these data to determine how soil moisture varies on diel, seasonal and multi-year timescales, and to better understand the quantitative and mechanistic relationships between soil moisture and forest evapotranspiration. The mean annual precipitation at the site was over 1900 mm. The field capacity was approximately 0·53 m3 m,3 and was nearly uniform with soil depth. Soil moisture decreased at all levels during the dry season, with the minimum of 0·38 m3 m,3 at 3 m beneath the surface. The moisture in the upper 1 m showed a strong diel cycle with daytime depletion due to evapotranspiration. The moisture beneath 1 m declined during both day and night due to the combined effects of evapotranspiration, drainage and a nighttime upward movement of water. The depth of active water withdrawal changed markedly over the year. The upper 2 m of soil supplied ,56% of the water used for evapotranspiration in the wet season and ,28% of the water used in the dry season. The zone of active water withdrawal extended to a depth of at least 10 m. The day-to-day rates of moisture withdrawal from the upper 10 m of soil during rain-free periods agreed well with simultaneous measurements of whole-forest evapotranspiration made by the eddy covariance technique. The forest at the site was well adapted to the normal cycle of wet and dry seasons, and the dry season had only a small effect on the rates of land,atmosphere water vapour exchange. Copyright © 2006 John Wiley & Sons, Ltd. [source]