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Many Important Applications (many + important_application)
Selected AbstractsImplementation, performance, and science results from a 30.7 TFLOPS IBM BladeCenter clusterCONCURRENCY AND COMPUTATION: PRACTICE & EXPERIENCE, Issue 2 2010Craig A. Stewart Abstract This paper describes Indiana University's implementation, performance testing, and use of a large high performance computing system. IU's Big Red, a 20.48 TFLOPS IBM e1350 BladeCenter cluster, appeared in the 27th Top500 list as the 23rd fastest supercomputer in the world in June 2006. In spring 2007, this computer was upgraded to 30.72 TFLOPS. The e1350 BladeCenter architecture, including two internal networks accessible to users and user applications and two networks used exclusively for system management, has enabled the system to provide good scalability on many important applications while being well manageable. Implementing a system based on the JS21 Blade and PowerPC 970MP processor within the US TeraGrid presented certain challenges, given that Intel-compatible processors dominate the TeraGrid. However, the particular characteristics of the PowerPC have enabled it to be highly popular among certain application communities, particularly users of molecular dynamics and weather forecasting codes. A critical aspect of Big Red's implementation has been a focus on Science Gateways, which provide graphical interfaces to systems supporting end-to-end scientific workflows. Several Science Gateways have been implemented that access Big Red as a computational resource,some via the TeraGrid, some not affiliated with the TeraGrid. In summary, Big Red has been successfully integrated with the TeraGrid, and is used by many researchers locally at IU via grids and Science Gateways. It has been a success in terms of enabling scientific discoveries at IU and, via the TeraGrid, across the US. Copyright © 2009 John Wiley & Sons, Ltd. [source] Three-Dimensionally Ordered Gold Nanocrystal/Silica Superlattice Thin Films Synthesized via Sol,Gel Self-Assembly,ADVANCED FUNCTIONAL MATERIALS, Issue 7 2006H. Fan Abstract Nanocrystals and their ordered arrays hold many important applications in fields such as catalysis, surface-enhanced Raman spectroscopy based sensors, memory storage, and electronic and optical nanodevices. Herein, a simple and general method to synthesize ordered, three-dimensional, transparent gold nanocrystal/silica superlattice thin films by self-assembly of gold nanocrystal micelles with silica or organosilsesquioxane by spin-coating is reported. The self-assembly process is conducted under acidic sol,gel conditions (ca.,pH,2), ensuring spin-solution homogeneity and stability and facilitating the formation of ordered and transparent gold nanocrystal/silica films. The monodisperse nanocrystals are organized within inorganic host matrices as a face-centered cubic mesostructure, and characterized by transmission electron spectroscopy and X-ray diffraction. [source] Effect of amino acids containing sulfur on dithiolopyrrolone antibiotic productions by Saccharothrix algeriensis NRRL B-24137JOURNAL OF APPLIED MICROBIOLOGY, Issue 2 2006N. Bouras Abstract Aims:, To study the effect of sulfur-containing amino acids (L-cysteine, L-cystine, L-methionine and DL-ethionine) on the production of dithiolopyrrolone antibiotics by Saccharothrix algeriensis NRRL B-24137. Methods and Results:, The production levels of dithiolopyrrolones were investigated by using high performance liquid chromatography in a chemically semi-synthetic medium. The production of the studied antibiotics depends upon the nature, concentration and the time of addition of these sources in the culture medium. Both cysteine and cystine favoured the specific productions of dithiolopyrrolones; iso-butyryl-pyrrothine (ISP) by cysteine, however butanoyl-pyrrothine, senecioyl-pyrrothine and tigloyl-pyrrothine by cystine, when added initially to the culture medium. The maximum specific productions of dithiolopyrrolones were observed in the presence of 5 mmol l,1 cystine for thiolutin, 5 mmol l,1 cysteine for ISP, and 10 mmol l,1 cystine for others studied dithiolopyrrolones as shown in Fig. 3. The production of these antibiotics was decreased when the concentrations of cysteine and cystine were in excess. All dithiolopyrrolone specific productions were strongly inhibited by addition of methionine and ethionine, without inhibition of mycelial growth. Figure 3. Effect of cysteine () and cystine () addition at different concentrations on specific production of thiolutin (a), senecioyl-pyrrothine (b), tigloyl-pyrrothine (c), iso-butyryl-pyrrothine (d) and butanoyl-pyrrothine (e). Specific dithiolopyrrolone productions are given as mg per g of biomass at the time of maximal productions during 96 h of fermentation. Conclusions:, Among all studied amino acids, cystine and cysteine can be used as supplements for improvement the production of dithiolopyrrolone antibiotics by S. algeriensis NRRL B-24137. Significance and Impact of the Study:, Dithiolopyrrolone antibiotics have many important applications for employing them as medicaments, particularly in the treatment of human and animal cancers. In the present work, the influence of containing-sulfur amino acids on dithiolopyrrolone antibiotic productions was studied. The obtained results can be employed for the optimization of the culture medium for the dithiolopyrrolone productions in higher quantities. [source] MOLECULAR AND PHYLOGENETIC CHARACTERIZATION OF PHORMIDIUM SPECIES (CYANOPROKARYOTA) USING THE CPCB-IGS-CPCA LOCUS,JOURNAL OF PHYCOLOGY, Issue 1 2005Ivanka Teneva The accurate determination of species of Cyanoprokaryota/Cyanophyceae has many important applications. These include the assessment of risk with regard to blooms in water reservoirs as well as the identification of species capable of producing valuable bioactive compounds. Commonly, Cyanoprokaryota are classified based on their morphology. However, morphological criteria are not always reliable because they may change, for example, due to environmental factors. Thus, genetic and molecular analyses are a promising additional approach, but their application has so far been limited to relatively few genera. In light of this, we present here the first characterization of species and strains of the genus Phormidium Kütz. based on the cpcB-IGS-cpcA locus of the phycocyanin operon. In phylogenetic analyses using deduced amino acid sequences of the cpcB-cpcA regions, Phormidium was found to be polyphyletic. This analysis appeared to be dominated by the cpcB region, which is characterized by a relatively high percentage of informative substitutions. The percentage of variable positions within the cpcB-IGS-cpcA locus overall was 16.5%, thereby indicating a level of divergence remarkably higher than that reported for Nodularia and Arthrospira in previous studies relying on cpcB-IGS-cpcA. Further, alignment of informative nucleotide substitutions in the cpcB-IGS-cpcA sequences revealed a mosaic distribution, which may be indicative of genetic recombination events. Finally, the length and sequences of the IGS region alone proved useful as markers to differentiate the cyanobacterial genus Phormidium. However, whether the IGS region per se is sufficiently discriminatory to differentiate between Phormidium species or even strains requires further investigation using newly identified Phormidium sequence data. [source] A simple laser photogrammetry technique for measuring Hector's dolphins (Cephalorhynchus hectori) in the fieldMARINE MAMMAL SCIENCE, Issue 2 2010Trudi Webster Abstract The ability to measure and age individuals within a population has many important applications, for example, for examining growth and determining size class. We developed a simple photogrammetric system using two parallel lasers and a digital camera, in order to measure dorsal fin dimensions of free-ranging Hector's dolphins. Laser dots were projected onto the fin, providing scale, thus allowing measurement as well as simultaneous photo-ID of 34 individuals from fin nicks and other marks. Multiple measurements (,5) were available for six individuals; these resulted in mean CVs of 3.71% for fin length and 3.76% for fin height. Errors due to variations in angle and measurement were quantified via photography of a fiberglass Hector's dolphin model. Allometric measurements and age data were collated from 233 autopsied Hector's dolphins. Using these data, fin length was found to be a better predictor of total length (females r2= 0.732, males r2= 0.678) than fin height. Gompertz age/length growth curves were fitted to these individuals. Linear regressions were used to estimate total length for 34 individuals from laser-metrically estimated fin base length. Individuals were then assigned one of three age categories. This system shows promise as a noninvasive way of measuring individuals, while allowing simultaneous photographic identification. [source] Model-Based Failure Detection on Nonlinear Systems: Theory and TransitionNAVAL ENGINEERS JOURNAL, Issue 2 2007KIMBERLY J. DRAKE Failure detection is an active area of Navy research due to its many important applications. Recently, an approach for multi-model identification and fault detection in the presence of bounded energy noise over finite time intervals has been introduced. This family of algorithms was originally designed to work on linear systems that can be modeled analytically. In this paper, efforts made toward extending this algorithm for fault detection to nonlinear systems along with efforts in testing this family of algorithms on real systems are discussed. [source] A molecular diagnostic for identifying central African forest artiodactyls from faecal pelletsANIMAL CONSERVATION, Issue 1 2010S. Ntie Abstract Small to medium-sized central African forest artiodactyls constitute a diverse yet heavily hunted group composed primarily of species within the genera Cephalophus, Neotragus, Tragelaphus and Hyemoschus. Of these genera, Cephalophus is the richest with as many as seven sympatric species known to occur in central African forests. However, differentiating species from their faeces or from tissue where the whole carcass is unavailable is very difficult. In order to develop a robust molecular diagnostic for species identification, a database of mitochondrial cytochrome b (553 bp) and control region (,675 bp) sequences was compiled from all forest Cephalophus species and other similarly sized, sympatric Tragelaphus, Neotragus and Hyemoschus species. Reference phylogenies from each marker were then used to recover the identity of sequences obtained from unknown faecal samples collected in the field. Results were then compared to determine which region best recovered species identity with the highest statistical support. Restriction fragment length polymorphisms (RFLPs) were also assessed as an alternative method for rapid species identification. Of the methods examined, tree-based analyses built on a geographically comprehensive database of control region sequences was the best means of reliably recovering species identity from central African duikers. However, three sister taxa appear indistinguishable (Cephalophus callipygus, Cephalophus ogilbyi and Cephalophus weynsi) and not all species were monophyletic. This lack of monophyly may be due to incomplete lineage sorting commonly observed in recently derived taxa, hybridization or the presence of nuclear translocated copies of mitochondrial DNA. The high level of intra-specific variation and lack of robust species-specific diagnostic sites made an RFLP-based approach to duiker species identification difficult to implement. The tree-based control region diagnostic presented here has many important applications including fine-scale mapping of species distributions, identification of confiscated tissue and environmental impact assessments. [source] A GENERALIZED EMERSON RECURRENCE RELATIONAUSTRALIAN & NEW ZEALAND JOURNAL OF STATISTICS, Issue 3 2008J. C. W. Rayner Summary The Emerson (1968, Biometrics 24, 695,701) recurrence relation has many important applications in statistics. However, the original derivation applied only to discrete distributions. In the following, a simple derivation is given that generalizes the Emerson recurrence relation to any distribution for which the necessary expectations exist. A modern application is outlined. [source] Recent progress in engineering ,/, hydrolase-fold family membersBIOTECHNOLOGY JOURNAL, Issue 2 2007Zhen Qian Abstract The members of the ,/, hydrolase-fold family represent a functionally versatile group of enzymes with many important applications in biocatalysis. Given the technical significance of ,/, hydrolases in processes ranging from the kinetic resolution of enantiomeric precursors for pharmaceutical compounds to bulk products such as laundry detergent, optimizing and tailoring enzymes for these applications presents an ongoing challenge to chemists, biochemists, and engineers alike. A review of the recent literature on ,/, hydrolase engineering suggests that the early successes of "random processes" such as directed evolution are now being slowly replaced by more hypothesis-driven, focused library approaches. These developments reflect a better understanding of the enzymes' structure-function relationship and improved computational resources, which allow for more sophisticated search and prediction algorithms, as well as, in a very practical sense, the realization that bigger is not always better. [source] | ||||||||||