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Major Fraction (major + fraction)
Selected AbstractsDegradation of alkanes by bacteriaENVIRONMENTAL MICROBIOLOGY, Issue 10 2009Fernando Rojo Summary Pollution of soil and water environments by crude oil has been, and is still today, an important problem. Crude oil is a complex mixture of thousands of compounds. Among them, alkanes constitute the major fraction. Alkanes are saturated hydrocarbons of different sizes and structures. Although they are chemically very inert, most of them can be efficiently degraded by several microorganisms. This review summarizes current knowledge on how microorganisms degrade alkanes, focusing on the biochemical pathways used and on how the expression of pathway genes is regulated and integrated within cell physiology. [source] Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface watersENVIRONMENTAL MICROBIOLOGY, Issue 2 2009Jorge Frias-Lopez Summary Prochlorococcus and Synechococcus are the two most abundant marine cyanobacteria. They represent a significant fraction of the total primary production of the world oceans and comprise a major fraction of the prey biomass available to phagotrophic protists. Despite relatively rapid growth rates, picocyanobacterial cell densities in open-ocean surface waters remain fairly constant, implying steady mortality due to viral infection and consumption by predators. There have been several studies on grazing by specific protists on Prochlorococcus and Synechococcus in culture, and of cell loss rates due to overall grazing in the field. However, the specific sources of mortality of these primary producers in the wild remain unknown. Here, we use a modification of the RNA stable isotope probing technique (RNA-SIP), which involves adding labelled cells to natural seawater, to identify active predators that are specifically consuming Prochlorococcus and Synechococcus in the surface waters of the Pacific Ocean. Four major groups were identified as having their 18S rRNA highly labelled: Prymnesiophyceae (Haptophyta), Dictyochophyceae (Stramenopiles), Bolidomonas (Stramenopiles) and Dinoflagellata (Alveolata). For the first three of these, the closest relative of the sequences identified was a photosynthetic organism, indicating the presence of mixotrophs among picocyanobacterial predators. We conclude that the use of RNA-SIP is a useful method to identity specific predators for picocyanobacteria in situ, and that the method could possibly be used to identify other bacterial predators important in the microbial food-web. [source] Ultrasonic treatment of waste activated sludgeENVIRONMENTAL PROGRESS & SUSTAINABLE ENERGY, Issue 2 2006Raf Dewil Abstract Activated sludge processes are key technologies to treat wastewater. These biological processes produce huge amounts of waste activated sludge (WAS), now commonly called biosolids. Mechanical, thermal, and/or chemical WAS conditioning techniques have been proposed to reduce the sludge burden. The ultrasonic treatment of WAS is quite novel. The present paper reports on extensive investigations using an ultrasonic treatment of WAS, to study its potential to meet one or all of four objectives: (1) reduce WAS quantities; (2) achieve a better dewaterability; (3) provoke a release of soluble chemical oxygen demand (COD) from the biosolids, preferably transformed into biodegradable organics; and (4) possibly destroy the filamentous microorganisms responsible for sludge bulking. Although meeting these objectives would help to solve the problems cited, the energy consumption could be a considerable drawback: the paper will thus assess whether all or some objectives are met, and at what operational cost. A literature survey defines the occurring phenomena (cavitation) and the important operation parameters [such as frequency, duration, specific energy input (SE)]. The experiments are carried out in a batch reactor of volume up to 2.3 L. The ultrasonic equipment consisted of a generator, a converter, and a sonotrode, supplied by Alpha Ultrasonics under the brand name of Telsonic. Three different kinds of sludge were tested, with different concentrations of dry solids (DS) between approximately 3.5 and 14 g DS/L WAS. Ultrasonic energy was introduced in a continuous manner (against possible pulsed operation). The major operational parameters studied include duration of the ultrasonic treatment and specific energy input. The applied frequency was set at 20 kHz. The release of COD from the WAS phase into the filtrate phase is a function of the specific energy input with yields of nearly 30% achievable at SE values of 30,000 kJ/kg DS. A major fraction of the COD is transformed into biodegradable organics (BOD). The reduction in DS fraction of the sludge is proportional to the COD release rates. Although the DS content is reduced, the dewaterability of the sludge is not improved. This reflects itself in increased filtration times during vacuum filtration and in increased values of the capillary suction time (CST). This more difficult dewaterability is the result of considerably reduced floc sizes, offering an extended surface area: more surface water is bound (CST increases) and the filterability decreases as a result of clogging of the cake. To reach the same dryness as for the untreated cake, the required dosage of polyelectrolyte is nearly doubled when the SE of the ultrasound treatment is increased from 7500 to 20,000 kJ/kg DS. The ultrasonic reduction of filamentous WAS organisms is not conclusive and very little effect is seen at low intensities and short treatment durations. Microscopic analysis of the WAS identified the dominant presence of Actynomyces. The release of soluble COD and BOD certainly merit further research. © 2006 American Institute of Chemical Engineers Environ Prog, 2006 [source] Immune modulation of HLA-G dimer in maternal-fetal interfaceEUROPEAN JOURNAL OF IMMUNOLOGY, Issue 7 2007Kimiko Kuroki Abstract HLA-G is a non-classical human MHC class I molecule, which has several characteristics distinct from classical MHC, such as low polymorphism and restricted tissue distribution. HLA-G is expressed on placenta, thymus and some tumors. At the maternal-fetal interface, trophoblasts do not express major classical MHC class I molecules (MHCI), HLA-A and -B, to prevent normal T cell responses. Instead, HLA-G is expressed and can suppress a wide range of immune responses by binding to inhibitory immune cell surface receptors, such as leukocyte Ig-like receptor (LILR) B1 and LILRB2. HLA-G exists in various forms, including ,2m-associated or -free disulfide-linked dimers that can be expressed either at the cell surface or in soluble form. However, until recently the physiological role of these different molecular forms has been unclear. In this issue of the European Journal of Immunology, one article demonstrates that the disulfide-linked homodimer of ,2m-associated HLA-G is the major fraction expressed by trophoblast cells. The HLA-G dimer modulates the function of LILRB1-expressing antigen-presenting cells by principally binding to LILRB1. On the other hand, another recent report showed that ,2m-free disulfide-linked HLA-G dimers are produced by villous cytotrophoblast cells. Taken together, these results provide strong evidence in support of the hypothesis that HLA-G dimers play a role in immune suppression at the maternal-fetal interface. Further in-depth investigation will help to clarify the precise mechanism of HLA-G receptor recognition and signaling in vivo and the role of these interactions in successful reproduction. See accompanying article: http://dx.doi.org/10.1002/eji.200737089 [source] Preferential phosphorus leaching from an irrigated grassland soilEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 2 2005G. S. Toor Summary Intact lysimeters (50 cm diameter, 70 cm deep) of silt loam soil under permanent grassland were used to investigate preferential transport of phosphorus (P) by leaching immediately after application of dairy effluent. Four treatments that received mineral P fertilizer alone (superphosphate at 45 kg P ha,1 year,1) or in combination with effluent (at , 40,80 kg P ha,1 year,1) over 2 years were monitored. Losses of total P from the combined P fertilizer and effluent treatments were 1.6,2.3 kg ha,1 (60% of overall loss) during eight drainage events following effluent application. The rest of the P lost (40% of overall loss) occurred during 43 drainage events following a significant rainfall or irrigation compared with 0.30 kg ha,1 from mineral P fertilizer alone. Reactive forms of P (mainly dissolved reactive P: 38,76%) were the dominant fractions in effluent compared with unreactive P forms (mainly particulate unreactive P: 15,56%). In contrast, in leachate following effluent application, particulate unreactive P was the major fraction (71,79%) compared with dissolved reactive P (1,7%). The results were corroborated by 31P nuclear magnetic resonance analysis, which showed that inorganic orthophosphate was the predominant P fraction present in the effluent (86%), while orthophosphate monoesters and diesters together comprised up to 88% of P in leachate. This shows that unreactive P forms were selectively transported through soil because of their greater mobility as monoesters (labile monoester P and inositol hexakisphosphate) and diesters. The short-term strategies for reducing loss of P after application of dairy effluent application should involve increasing the residence time of applied effluent in the soil profile. This can be achieved by applying effluent frequently in small amounts. [source] Neutrophil depletion protects against murine acetaminophen hepatotoxicity,,HEPATOLOGY, Issue 6 2006Zhang-Xu Liu We previously reported that liver natural killer (NK) and NKT cells play a critical role in mouse model of acetaminophen (APAP)-induced liver injury by producing interferon gamma (IFN-,) and modulating chemokine production and subsequent recruitment of neutrophils into the liver. In this report, we examined the role of neutrophils in the progression of APAP hepatotoxicity. C57BL/6 mice were given an intraperitoneal toxic dose of APAP (500 mg/kg), which caused severe acute liver injury characterized by significant elevation of serum ALT, centrilobular hepatic necrosis, and increased hepatic inflammatory cell accumulation. Flow cytometric analysis of isolated hepatic leukocytes demonstrated that the major fraction of increased hepatic leukocytes at 6 and 24 hours after APAP was neutrophils (Mac-1+Gr-1+). Depletion of neutrophils by in vivo treatment with anti-Gr-1 antibody (RB6-8C5) significantly protected mice against APAP-induced liver injury, as evidenced by markedly reduced serum ALT levels, centrilobular hepatic necrosis, and improved mouse survival. The protection was associated with decreased FasL-expressing cells, cytotoxicity against hepatocytes, and respiratory burst in hepatic leukocytes. In intracellular adhesion molecule (ICAM)-1,deficient mice, APAP caused markedly reduced liver injury when compared with wild-type mice. The marked protection in ICAM-1,deficient mice was associated with decreased accumulation of neutrophils in the liver. Hepatic GSH depletion and APAP-adducts showed no differences among the antibody-treated, ICAM-1,deficient, and normal mice. In conclusion, accumulated neutrophils in the liver contribute to the progression and severity of APAP-induced liver injury. (HEPATOLOGY 2006;43:1220,1230.) [source] Heating effects of the matrix of experimentally shocked Murchison CM chondrite: Comparison with micrometeoritesMETEORITICS & PLANETARY SCIENCE, Issue 1 2007Naotaka TOMIOKA However, if a major fraction of micrometeorites are produced by impacts on porous asteroids, they may have experienced shock heating before contact with the Earth's atmosphere (Tomeoka et al. 2003). A transmission electron microscope (TEM) study of the matrix of Murchison CM chondrite experimentally shocked at pressures of 10,49 GPa shows that its mineralogy and texture change dramatically, mainly due to shock heating, with the progressive shock pressures. Tochilinite is completely decomposed to an amorphous material at 10 GPa. Fe-Mg serpentine is partially decomposed and decreases in amount with increasing pressure from 10 to 30 GPa and is completely decomposed at 36 GPa. At 49 GPa, the matrix is extensively melted and consists mostly of aggregates of equigranular grains of Fe-rich olivine and less abundant low-Ca pyroxene embedded in Si-rich glass. The mineralogy and texture of the shocked samples are similar to those of some types of micrometeorites. In particular, the samples shocked at 10 and 21 GPa are similar to the phyllosilicate (serpentine)-rich micrometeorites, and the sample shocked at 49 GPa is similar to the olivine-rich micrometeorites. The shock heating effects also resemble the effects of pulse-heating experiments on the CI and CM chondrite matrices that were conducted to simulate atmospheric entry heating. We suggest that micrometeorites derived from porous asteroids are likely to go through both shock and atmospheric-entry heating processes. [source] Alkali insoluble glucan extracted from Acremonium diospyri is a more potent immunostimulant in the Indian White Shrimp, Fenneropenaeus indicus than alkali soluble glucanAQUACULTURE RESEARCH, Issue 11 2009Abdulaziz Anas Abstract Effect of an extraction method on the structure of glucan and its immunostimulatory response in Fenneropenaeus indicus was investigated. Here we extracted alkali insoluble glucan (AIG) and alkali soluble glucan (ASG) from a filamentous fungi Acremonium diospyri following alkali,acid hydrolysis and the sodium hypochlorite oxidation and dimethyl sulphoxide extraction method respectively. Structural analysis showed that 85% of glucan in AIG was a (1,3)-,- d -glucan and it increased the prophenoloxidase and reactive oxygen intermediate activity when administered to F. indicus. On the other hand, ASG, which contained 93% (1,3)-,-glucan, did not induce significant immune response in shrimp. Here we report that the difference in immunostimulatory potential between AIG and ASG is due to the difference in the percentage of (1,3)-,- d -glucans present in each preparation, which varies with the method of extraction employed. Also our observations suggest that glucan can be used as a potential immunostimulant to shrimp, provided it contains (1,3)-,- d -glucan as the major fraction. [source] Functions of cyclin D1 as an oncogene and regulation of cyclin D1 expressionCANCER SCIENCE, Issue 5 2007Etsu Tashiro Cyclin D1 binds to the Cdk4 and Cdk6 to form a pRB kinase. Upon phosphorylation, pRB loses its repressive activity for the E2F transcription factor, which then activates transcription of several genes required for the transition from the G1- to S-phase and for DNA replication. The cyclin D1 gene is rearranged and overexpressed in centrocytic lymphomas and parathyroid tumors and it is amplified and/or overexpressed in a major fraction of human tumors of various types of cancer. Ectopic overexpression of cyclin D1 in fibroblast cultures shortens the G1 phase of the cell cycle. Furthermore, it has been demonstrated that introduction of an antisense cyclin D1 into a human carcinoma cell line, in which the cyclin D1 gene is amplified and overexpressed, causes reversion of the malignant phenotype. Thus, increased expression of cyclin D1 can play a critical role in tumor development and in maintenance of the malignant phenotype. However, it is insufficient to confer transformed properties on primary or established fibroblasts. In this review, we summarize the role of cyclin D1 on tumor development and malignant transformation. In addition, our chemical biology study to understand the regulatory mechanism of cyclin D1 transcription is also reviewed. (Cancer Sci 2007; 98: 629,635) [source] From genomics via proteomics to cellular physiology of the Gram-positive model organism Bacillus subtilisCELLULAR MICROBIOLOGY, Issue 8 2005Uwe Völker Summary Complementing proteomic technologies enable an unbiased view of cellular adaptation and thus may provide a new understanding of cellular physiology, particularly for microorganisms because a major fraction of their proteome is accessible to currently available technology. In combination with transcriptional profiling expression proteomics provides access to interesting candidate genes and proteins that will then need to be validated and supplemented by traditional physiological, biochemical and genetic approaches. After a description of the current status of the technology, we display the potential of microbial proteomics using the model organism Bacillus subtilis as example. Starting from a proteome map a proteomic view of the metabolism will be provided. Furthermore, we demonstrate that proteomics complemented by transcriptomics is also useful for the study of stress and starvation responses and that integration of these data will lead to a comprehensive understanding of the adaptational network of bacterial cells. Thus, B. subtilis constitutes a highly versatile and tractable model organism for the study of generic stress responses and the expertise that has been gained can easily be transferred to the study of the cellular physiology of related Gram-positive pathogens and their pathophysiology. [source] Structural analysis of the lipopolysaccharide from Chlamydophila psittaci strain 6BCFEBS JOURNAL, Issue 18 2000Sabine Rund The lipopolysaccaride of Chlamydophila psittaci 6BC was isolated from tissue culture-grown elementary bodies using a modified phenol/water procedure followed by extraction with phenol/chloroform/light petroleum. Compositional analyses indicated the presence of 3-deoxy- dmanno -oct-2-ulosonic acid, GlcN, organic bound phosphate and fatty acids in a molar ratio of ,,3.3 : 2 : 1.8 : 4.6. Deacylated lipopolysaccharide was obtained after successive microscale treatment with hydrazine and potassium hydroxide, and was then separated by high performance anion-exchange chromatography into two major fractions, the structures of which were determined by 600 MHz NMR spectroscopy as ,-Kdo-(2,8)-,-Kdo-(2,4)-,-Kdo-(2,6)-,- d -GlcpN-(1,6)-,- d -GlcpN 1,4,-bisphosphate and ,-Kdo-(2,4)-[,-Kdo-(2,8)]-,-Kdo-(2,4)-,-Kdo-(2,6)-,- d -GlcpN-(1,6)-,- d -GlcpN 1,4,-bisphosphate. The distribution of fatty acids in lipid A was determined by compositional analyses and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry experiments on lipid A and de-O-acylated lipid A. It was shown that the carbohydrate backbone of lipid A is replaced by a complex mixture of fatty acids, including long-chain and branched (R)-configured 3-hydroxy fatty acids, the latter being exclusively present in an amide linkage. [source] Immediate hypersensitivity to Malassezia furfur in patients with atopic dermatitisMYCOSES, Issue 4 2007A. R. Khosravi Summary Atopic dermatitis (AD) is a chronic pruritic dermatitis that has unknown aetiology. It seems that Malassezia furfur has a role in pathogenesis of AD. The purpose of this study was to evaluate skin responses to M. furfur antigens in AD patients. Malassezia furfur was grown and the yeasts were broken. Cells were centrifuged and supernatants were used as crude extracts (CE). Protein components of CE were separated by sodium dodecylsulphate,polyacrylamide gel electrophoresis (SDS,PAGE). In addition, to fractionate CE antigens, gel filtration chromatography was performed. One hundred and fifteen AD patients were selected for skin-prick test (SPT). In SDS,PAGE, CE showed a total of 19 different protein bands (10,100 kDa). Chromatographic gel filtration with M. furfur proteins showed four major fractions (F). The protein pattern of F1 (tube no. 40) was between 22 and 100 kDa and it was selected for SPT. In SPT, 49.6% and 42.6% patients showed positive reactions with CE and F1 antigens respectively. The most positive results were obtained in 20,29 aged group (P < 0.001). The allergens of M. furfur may have a role in AD signs; it is suggested to use F1 antigens in allergy tests. [source] Separation and quantification of the cellular thiol pool of pea plants treated with heat, salt and atrazinePHYTOCHEMICAL ANALYSIS, Issue 4 2007Sergei Veselinov Ivanov Abstract A novel procedure for the separation of the cellular thiol pool according to the molecular weight and localization of compounds with sulphydryl groups is presented. This simple and rapid method allows the differentiation of thiols into three major fractions,low molecular weight (LMT, primarily glutathione and free cysteine), protein-bound (TPT) and pellet-bound (PBT, associated with cell walls and broken organelles). Moreover, determination of the ratio between surface (readily reactive) thiols (ATG) and those that are more or less buried in the protein structure (BTG) can be achieved. In intact pea leaves, the amounts of the total thiols (LMT + PBT + TPT) varies from 2.5 to 4.8 µmol/g of fresh material. The data for LMT, PBT and TPT were related to each other in the approximate ratio 1:2:7. Treatments of pea plants with high temperature, salinity and low amounts of atrazine affect these sulphydryl types differently. For a greater understanding of the applicability of this method to physiological research, the main mechanisms leading to alterations in the cellular thiol pool are discussed. Furthermore, it is suggested that the proportion of available to buried thiols (ATG/BTG) in proteins could be used as a convenient marker for stress impacts. Copyright © 2007 John Wiley & Sons, Ltd. [source] | |||||||||||||||||||