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Major Classes (major + class)
Selected AbstractsDiscovery of dendrimers and dendritic polymers: A brief historical perspective,JOURNAL OF POLYMER SCIENCE (IN TWO SECTIONS), Issue 16 2002Donald A. Tomalia Abstract A brief historical perspective relating the discovery of dendrimers and other dendritic polymers is presented. Dendritic polymers are recognized as the fourth major class of macromolecular architecture consisting of four sub- classes, namely, (1) random hyperbranched, (2) dendrigrafts, (3) dendrons, and (4) dendrimers. The previous literature is reviewed with anecdotal events leading to implications for dendrimers in the emerging science of nanotechnology. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 2719,2728, 2002 [source] Pressure induced high spin to low spin transition in magnesiowüstitePHYSICA STATUS SOLIDI (B) BASIC SOLID STATE PHYSICS, Issue 9 2006Taku Tsuchiya Abstract Using a rotationally invariant formulation of LDA + U, we report a successful study of the high spin (HS)/low spin (LS) transition in low solute concentration magnesiowüstite (Mw), (Mg1,xFex )O, (x < 20%), the second most abundant phase in Earth's lower mantle. The HS state crosses over smoothly to the LS state passing through an insulating mixed spins state where properties change continuously, as seen experimentally. These encouraging results indicate this method should enable first principles studies of strongly correlated iron-bearing minerals, a major class of mineral physics problems. (© 2006 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Actin-Based Motility in the Net Slime Mould Labyrinthula: Evidence for the Role of Myosin in Gliding MovementTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 6 2005TERENCE M. PRESTON Abstract. In contrast to crawling movement (e.g. in amoebae and tissue cells) the other major class of substratum-associated motility in eukaryotes, gliding, has received relatively little attention. The net slime mold Labyrinthula provides a useful laboratory model for studying this process since it exhibits a particular kind of gliding in its plasmodial stage. Here nucleated spindle cells glide along self-established cytoplasmic trackways in a predominantly unidirectional manner, at 1,2 ,m/s. These trackways, upon which gliding is dependent, are held by filopodial tethers some distance off the well-developed reticulopodial mesh anchoring the plasmodium onto the substratum. Reflection interference microscopy resolves this matrix in live plasmodia. The axially disposed cytoskeletal elements of the trackways are revealed by rhodamine-labelled phalloidin to be rich in F-actin. A weft of peripheral, rapidly extending filopodia (50 ,m/min) typifies the expanding regions of the plasmodium. Here spindle cells are recruited before emigrating into newly differentiated trackways. Immunoblotting whole plasmodia or a sucrose-soluble cytoplasmic extract reveals a single actin-positive band of Mr 48 kDa. Polyclonal antibodies to two distinct myosin peptide sequences identify a single myosin HC (Mr 96 kDa) in immunoblots. Gliding was reversibly blocked by 10 mM 2,3-butanedione-2-monoxime, a myosin ATPase inhibitor, but it was insensitive to the actin-binding drugs cytochalasin D and phalloidin. We suggest that the force (>50 pN) for gliding motility results from interaction of myosin molecules, associated with the spindle cells, with trackway F-actin via the bothrosomes. [source] X-ray emission from optical novae in M 31,ASTRONOMISCHE NACHRICHTEN, Issue 2 2010W. Pietsch Abstract The first supersoft source (SSS) identification with an optical nova in M 31 was based on ROSAT observations. Twenty additional X-ray counterparts (mostly identified as SSS by their hardness ratios) were detected using archival ROSAT, XMM-Newton and Chandra observations obtained before July 2002. Based on these results optical novae seem to constitute the major class of SSS in M 31. An analysis of archival Chandra HRC-I and ACIS-I observations obtained from July 2004 to February 2005 demonstrated that M 31 nova SSS states lasted from months to about 10 years. Several novae showed short X-ray outbursts starting within 50 d after the optical outburst and lasting only two to three months. The fraction of novae detected in soft X-rays within a year after the optical outburst was more than 30%. Ongoing optical nova monitoring programs, optical spectral follow-up and an up-to-date nova catalogue are essential for the X-ray work. Re-analysis of archival nova data to improve positions and find additional nova candidates are urgently needed for secure recurrent nova identifications. Dedicated XMM-Newton/Chandra monitoring programs for X-ray emission from optical novae covering the centre area of M 31 continue to provide interesting new results (e.g. coherent 1105 s pulsations in the SSS counterpart of nova M31N 2007-12b). The SSS light curves of novae allow us , together with optical information , to estimate the mass of the white dwarf, of the ejecta and the burned mass in the outburst. Observations of the central area of M 31 allow us , in contrast to observations in the Galaxy , to monitor many novae simultaneously and proved to be prone to find many interesting SSS and nova types (© 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Recent discoveries of supersoft X-ray sources in M 31,ASTRONOMISCHE NACHRICHTEN, Issue 2 2010M. Henze Abstract Classical novae (CNe) have recently been reported to represent the major class of supersoft X-ray sources (SSSs) in the central area of our neighbouring galaxy M 31. This paper presents a review of results from recent X-ray observations of M 31 with XMM-Newton and Chandra. We carried out a dedicated optical and X-ray monitoring program of CNe and SSSs in the central area ofM 31. We discovered the first SSSs in M 31 globular clusters (GCs) and their connection to the very first discovered CN in a M 31 GC. This result may have an impact on the CN rate in GCs. Furthermore, in our optical and X-ray monitoring data we discovered the CN M3 1N 2007-11a, which shows a very short SSS phase of 29,52 days. Short SSS states (durations , 100 days) of CNe indicate massive white dwarfs (WDs) that are candidate progenitors of supernovae type Ia. In the case of M31N 2007-11a, the optical and X-ray light curves suggest a binary containing a WD with MWD > 1.0 M,. Finally, we present the discovery of the SSS counterpart of the CN M31N 2006-04a. The X-ray light curve of M31N 2006-04a shows short-time variability, which might indicate an orbital period of about 2 hours (© 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Identification of 1-palmitoyl-2-linoleoyl-phosphatidylethanolamine modifications under oxidative stress conditions by LC-MS/MSBIOMEDICAL CHROMATOGRAPHY, Issue 6 2009M. Rosário M. Domingues Abstract Phosphatidylethanolamines are a major class of phospholipids found in cellular membranes. Identification of the alterations in these phospholipids, induced by free radicals, could provide new tools for in vivo diagnosis of oxidative stress. In this study, 1-palmitoyl-2-linoleoyl-phosphatidylethanolamine oxidation products, induced by the hydroxyl radical, were studied using LC-MS and LC-MS/MS. Data obtained allowed the identification and separation of isomeric oxidative products with modifications in the sn -2 acyl chain, attributed to long- and short-chain products. Among long-chain products keto, keto-hydroxy, hydroxy, poly-hydroxy, peroxy and hydroxy,peroxy derivatives were identified. Product ions formed by loss of two H2O molecules vs loss of HOOH, allowed the identification of, respectively, di- (or poli-) hydroxy vs peroxy derivatives. Location of functional groups was determined by the product ions formed by cleavage of C,C bonds, in the vicinity of the oxidation positions, allowing the identification of C9, C12 and C13 as the predominant substituted positions. Short-chain products identified comprised aldehydes, hydroxy-aldehydes and carboxylic derivatives, with modified sn -2 acyl lengths of C7,C9 and C11, C12. Among the short-chain products identified, C9 products showed higher relative abundance. Copyright © 2009 John Wiley & Sons, Ltd. [source] ER quality control of immune receptors and regulators in plantsCELLULAR MICROBIOLOGY, Issue 6 2010Yusuke Saijo Summary Like in animals, cell surface and intracellular receptors mediate immune recognition of potential microbial intruders in plants. Membrane-localized pattern recognition receptors (PRRs) initiate immune responses upon perception of cognate microbe-associated molecular patterns (MAMPs). MAMP-triggered immunity provides a first line of defence that restricts the invasion and propagation of both adapted and non-adapted pathogens. The Leu-rich repeat (LRR) receptor protein kinases (RKs) define a major class of trans-membrane receptors in plants, of which some members are engaged in MAMP recognition and/or defence signalling. The endoplasmic reticulum (ER) quality control (QC) systems monitor N-glycosylation and folding states of the extracellular, ligand-binding LRR domains of LRR-RKs. Recent progress reveals a critical role of evolutionarily conserved ERQC components for different layers of plant immunity. N-glycosylation appears to play a role in ERQC fidelity rather than in ligand binding of LRR-RKs. Moreover, even closely related PRRs show receptor-specific requirements for N-glycosylation. These findings are reminiscent of the earlier defined function of the cytosolic chaperon complex for LRR domain-containing intracellular immune receptors. QC of the LRR domains might provide a basis not only for the maintenance but also for diversification of recognition specificities for immune receptors in plants. [source] Reflections on the immunogenicity of therapeutic proteinsCLINICAL MICROBIOLOGY AND INFECTION, Issue 8 2008G. Antonelli Abstract Therapeutic proteins are now established as a major class of medication with proven efficacy in treating a wide range of diseases. The administration of such proteins to patients can lead to the development of antibodies that are able to bind and eventually neutralise the protein administered. Many advances have been made in understanding the immunogenicity of therapeutic proteins, but opinions are often conflicting. Although it is important to understand more about the antibodies generated against therapeutic proteins, the need for future research must not be neglected, so that other relevant factors can be identified and addressed to maximise treatment benefits for patients. [source] CLINICAL STUDY: Proof-of-concept human laboratory study for protracted abstinence in alcohol dependence: effects of gabapentinADDICTION BIOLOGY, Issue 1 2009Barbara J. Mason ABSTRACT There is a need for safe medications that can effectively support recovery by treating symptoms of protracted abstinence that may precipitate relapse in alcoholics, e.g. craving and disturbances in sleep and mood. This proof-of-concept study reports on the effectiveness of gabapentin 1200 mg for attenuating these symptoms in a non-treatment-seeking sample of cue-reactive, alcohol-dependent individuals. Subjects were 33 paid volunteers with current Diagnostic and Statistical Manual of Mental Disorders-IV alcohol dependence and a strength of craving rating 1 SD or greater for alcohol than water cues. Subjects were randomly assigned to gabapentin or placebo for 1 week and then participated in a within-subjects trial where each was exposed to standardized sets of pleasant, neutral and unpleasant visual stimuli followed by alcohol or water cues. Gabapentin was associated with significantly greater reductions than placebo on several measures of subjective craving for alcohol as well as for affectively evoked craving. Gabapentin was also associated with significant improvement on several measures of sleep quality. Side effects were minimal, and gabapentin effects were not found to resemble any major classes of abused drugs. Results suggest that gabapentin may be effective for treating the protracted abstinence phase in alcohol dependence and that a randomized clinical trial would be an appropriate next step. The study also suggests the value of cue-reactivity studies as proof-of-concept screens for potential antirelapse drugs. [source] VICARIANCE AND DISPERSAL ACROSS BAJA CALIFORNIA IN DISJUNCT MARINE FISH POPULATIONSEVOLUTION, Issue 7 2003Giacomo Bernardi Abstract., Population disjunctions, as a first step toward complete allopatry, present an interesting situation to study incipient speciation. The geological formation of the Baja California Peninsula currently divides 19 species of fish into disjunct populations that are found on its Pacific Coast and in the northern part of the Gulf of California (also called the Sea of Cortez), but are absent from the Cape (Cabo San Lucas) region. We studied the genetic makeup of disjunct populations for 12 of these 19 fish species. Phylogeographic patterns for the 12 species can be separated into two major classes: a first group (eight species) showed reciprocal monophyly and high genetic divergence between disjunct populations. A second group (four species) displayed what appeared to be panmictic populations. Population structure between Pacific Coast populations, across the Punta Eugenia biogeographic boundary, was also evaluated. While dispersal potential (inferred by pelagic larval duration) was a poor predictor of population structure between Gulf of California and Pacific populations, we found that population genetic subdivision along the Pacific Coast at Punta Eugenia was always positively correlated with differentiation between Pacific and Gulf of California populations. Vicariant events, ongoing gene flow, and ecological characteristics played essential roles in shaping the population structures observed in this study. [source] Hypotheses for the origin and early evolution of triterpenoid cyclasesGEOBIOLOGY, Issue 1 2007W. W. FISCHER ABSTRACT Hopanes and steranes are found almost universally in the sedimentary rock record where they often are used as proxies for aerobic organisms, metabolisms, and environments. In order to interpret ancient lipid signatures confidently we require a complementary understanding of how these modern biochemical pathways evolved since their conception. For example, generally it has been assumed that hopanoid biosynthesis was an evolutionary predecessor to steroid biosynthesis. Here we re-evaluate this assumption. Using a combined phylogenetic and biochemical perspective, we address the evolution of polycyclic triterpenoid biosynthesis and suggest several constraints on using these molecules as aerobic biomarkers. Amino acid sequence data show that the enzymes responsible for polycyclic triterpenoid biosynthesis (i.e. squalene and 2,3-oxidosqualene cyclases) are homologous. Numerous conserved domains correspond to active sites in the enzymes that are required to complete the complex cyclization reaction. From these sites we develop an evolutionary analysis of three independent characters to explain the evolution of the major classes of polycyclic triterpenoids. These characters are: (i) the number of unfavourable anti-Markovnikov ring closures, (ii) all-chair (CCC) or chair-boat-chair (CBC) substrate conformation, and (iii) the choice between squalene and 2,3-oxidosqualene as the substrate. We use these characters to construct four competing phylogenies to describe the evolution of polycyclic triterpenoid biosynthesis. The analysis suggests that malabaricanoids would be the most ancient polycyclic triterpenoids. The two most parsimonious evolutionary trees are the ones in which hopanoid and steroid cyclases diverged from a common ancestor. The transition from a CCC- to CBC-fold marks the major divergence in the evolution of these pathways, and it is diagnosable in the geological record. However, this transition does not require the simultaneous adoption of the aerobic substrate, 2,3-oxidosqualene, because these characters are controlled by independent parts of the enzyme. [source] New Components Including Cyclopeptides from Barks of Christiana africana DC. (Tiliaceae)HELVETICA CHIMICA ACTA, Issue 6 2008Serge Michalet Abstract Phytochemical investigation of barks of Christiana africana led to the identification of cyclopeptide alkaloids, flavonoids, coumarinolignans, iridoids, sesquiterpenoids, and triterpenes. This plant was classified so far in the Tiliaceae family. This study was started while the genomic study of numerous specimens was described in order to establish new criteria for Malvales botanical classification. In the present work, twenty components were identified, belonging to the three major classes of secondary metabolites: alkaloids, phenols, and terpenes. In the first class, cyclopeptides are well-known compounds in Rhamnaceae and Sterculiaceae. Their presence in Malvaceae (in APG2 sensus) suggests a possible chemical link between the ex-Tiliaceae and the Malvaceae. [source] Factors associated with virological response in HIV-infected patients failing antiretroviral therapy: a prospective cohort studyHIV MEDICINE, Issue 2 2005S Fournier Objectives To assess the antiviral response to optimized therapy following genotypic resistance testing and to identify factors associated with virological response in HIV-1-infected patients failing antiretroviral therapy. Methods A prospective cohort study was conducted in 344 HIV-1-infected patients who underwent genotypic resistance testing because of virological failure. Virological response was defined as a plasma HIV RNA level below 200 HIV-1 RNA copies/mL or a drop of plasma viral load from baseline of more than 1 log10. A multivariate logistic regression analysis was performed to identify factors associated with virological response. Results The median age of the patients was 40 years, with a male to female ratio of 4:1. Fifty-one per cent of patients had received the three major classes of antiretrovirals and the median duration of previous antiretroviral therapy was 4.6 years. At baseline, the median plasma HIV RNA level was 4.4 log10 copies/mL and the median CD4 cell count was 274 cells/,L. At 3 months, 55% of patients (188 of 344) had a virological response, which was sustained at 6 months (53%). Predictors of virological response were exposure to two or fewer protease inhibitors [odds ratio (OR) 1.8; P=0.046], and use in optimized therapy of a new class of antiretrovirals (OR 2.9; P=0.006), of more than two new drugs (OR 3.0; P<0.0001), of abacavir (OR 1.9; P=0.03), or of lopinavir/ritonavir (OR 3.7; P=0.0002). Conclusions A high proportion of patients achieved a short-term virological response in this cohort study. Patients with the least experience of protease inhibitor treatment and in whom a new class of antiretroviral, more than two new drugs, abacavir or lopinavir/ritonavir was used in optimized therapy had the best virological outcome. [source] Dissolution of root canal sealer cements in volatile solventsINTERNATIONAL ENDODONTIC JOURNAL, Issue 1 2000J. M. Whitworth Whitworth JM, Boursin EM. Dissolution of root canal sealer cements in volatile solvents. International Endodontic Journal, 33, 19,24, 2000. Aim There are few published data on the solubility profiles of endodontic sealers in solvents commonly employed in root canal retreatment. This study tested the hypothesis that root canal sealer cements are insoluble in the volatile solvents chloroform and halothane. Methodology Standardized samples (n=5) of glass ionomer (Ketac Endo), zinc oxide-eugenol (Tubli-Seal EWT), calcium hydroxide (Apexit) and epoxy resin (AH Plus) based sealers were immersed in chloroform or halothane for 30 s, 1 min, 5 min and 10 min. Mean loss of weight was plotted against time of exposure, and differences in behaviour assessed by multiple paired t-tests (P <0.01). Results Clear differences were shown in the solubility profiles of major classes of root canal sealer cements in two common volatile solvents. In comparison with other classes of material, Ketac Endo was the least soluble in chloroform and halothane (P <0.01), with less than 1% weight loss after 10 min exposure to either solvent. Apexit had low solubility with 11.6% and 14.19% weight loss after 10 min exposure to chloroform and halothane, respectively. The difference between solvents was not significant (P >0.01). Tubli-Seal EWT was significantly less soluble in halothane than chloroform (5.19% and 62.5% weight loss after 10 min exposure, respectively (P <0.01)). Its solubility in halothane was not significantly different from that of Apexit. AH Plus was significantly more soluble than all other materials in both chloroform and halothane (96% and 68% weight loss after 10 min exposure, respectively (P <0.01)). Conclusions There are significant differences in the solubility profiles of major classes of root canal sealer in common organic solvents. Efforts should continue to find a more universally effective solvent for use in root canal retreatment. [source] A Comparison of HMO Efficiencies as a Function of Provider AutonomyJOURNAL OF RISK AND INSURANCE, Issue 1 2004Patrick L. Brockett Current debates in the insurance and public policy literatures over health care financing and cost control measures continue to focus on managed care and HMOs. The lower utilization rates found in HMOs (compared to traditional fee-for-service indemnity plans) have generally been attributed to the organization's incentive to eliminate all unnecessary medical services. As a consequence HMOs are often considered to be a more efficient arrangement for delivering health care. However, it is important to make a distinction between utilization and efficiency (the ratio of outcomes to resources). Few studies have investigated the effect that HMO arrangements would have on the actual efficiency of health care delivery. Because greater control over provider autonomy appears to be a recurrent theme in the literature on reform, it is important to investigate the effects these restrictions have already had within the HMO market. In this article, the efficiencies of two major classes of HMO arrangements are compared using "game-theoretic" data envelopment analysis (DEA) models. While other studies confirm that absolute costs to insurance firms and sponsoring companies are lowered using HMOs, our empirical findings suggest that, within this framework, efficiency generally becomes worse when provider autonomy is restricted. This should give new fuel to the insurance companies providing fee-for-service (FFS) indemnification plans in their marketplace contentions. [source] Role of gluten and its components in influencing durum wheat dough properties and spaghetti cooking qualityJOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 10 2007Mike J Sissons Abstract Protein is an important component of grain which affects the technological properties of durum wheat. It is known that the amount and composition of protein can influence dough rheology and pasta quality but the influence of the major classes of protein is not well documented. The influence of the various gluten components on dough and pasta properties was investigated. The protein composition of durum semolina was altered by either adding gluten fractions to a base semolina or preparing reconstituted flours with varying protein composition. The effects on semolina dough rheology and spaghetti texture were measured. Published methods to isolate relatively pure quantities (gram amounts) of glutenin, gliadin, high molecular and low molecular weight glutenin subunits were evaluated and modified procedures were adopted. Reconstituted flours with additional glutenin increased dough strength while additional gliadin and LMW-GS decreased strength. These changes did not impact on spaghetti texture. Results from using the addition of protein fractions to a base semolina showed that gluten and glutenin addition increased the dough strength of a weak base semolina while gliadin addition weakened the base dough further. Addition of HMW-GS greatly increased dough strength of the base while addition of LMW-GS greatly reduced dough strength. Again, these affects were not translated into firmer pasta. Copyright © 2007 Society of Chemical Industry [source] Subtype selective kainic acid receptor agonists: Discovery and approaches to rational designMEDICINAL RESEARCH REVIEWS, Issue 1 2009Lennart Bunch Abstract (S)-Glutamic acid (Glu) is the major excitatory neurotransmitter in the mammalian central nervous system, activating the plethora of glutamate receptors (GluRs). In broad lines, the GluRs are divided into two major classes: the ionotropic Glu receptors (iGluRs) and the metabotropic Glu receptors (mGluRs). Within the iGluRs, five subtypes (KA1, KA2, iGluR5-7) show high affinity and express full agonist activity upon binding of the naturally occurring amino acid kainic acid (KA). Thus these receptors have been named the KA receptors. This review describes all,to our knowledge,published KA receptor agonists. In total, over 100 compounds are described by means of chemical structure and available pharmacological data. With this perspective review, it is our intention to ignite and stimulate inspiration for future design and synthesis of novel subtype selective KA receptor agonists. © 2008 Wiley Periodicals, Inc. Med Res Rev, 29, No. 1, 3,28, 2009 [source] Synaptic structure, distribution, and circuitry in the central nervous system of the locust and related insectsMICROSCOPY RESEARCH AND TECHNIQUE, Issue 3 2002Alan Hugh David Watson Abstract The Orthopteran central nervous system has proved a fertile substrate for combined morphological and physiological studies of identified neurons. Electron microscopy reveals two major types of synaptic contacts between nerve fibres: chemical synapses (which predominate) and electrotonic (gap) junctions. The chemical synapses are characterized by a structural asymmetry between the pre- and postsynaptic electron dense paramembranous structures. The postsynaptic paramembranous density defines the extent of a synaptic contact that varies according to synaptic type and location in single identified neurons. Synaptic bars are the most prominent presynaptic element at both monadic and dyadic (divergent) synapses. These are associated with small electron lucent synaptic vesicles in neurons that are cholinergic or glutamatergic (round vesicles) or GABAergic (pleomorphic vesicles). Dense core vesicles of different sizes are indicative of the presence of peptide or amine transmitters. Synapses are mostly found on small-diameter neuropilar branches and the number of synaptic contacts constituting a single physiological synapse ranges from a few tens to several thousand depending on the neurones involved. Some principles of synaptic circuitry can be deduced from the analysis of highly ordered brain neuropiles. With the light microscope, synaptic location can be inferred from the distribution of the presynaptic protein synapsin I. In the ventral nerve cord, identified neurons that are components of circuits subserving known behaviours, have been studied using electrophysiology in combination with light and electron microscopy and immunocytochemistry of neuroactive compounds. This has allowed the synaptic distribution of the major classes of neurone in the ventral nerve cord to be analysed within a functional context. Microsc. Res. Tech. 56:210,226, 2002. © 2002 Wiley-Liss, Inc. [source] Multiple large filament bundles observed in Caulobacter crescentus by electron cryotomographyMOLECULAR MICROBIOLOGY, Issue 1 2006Ariane Briegel Summary While the absence of any cytoskeleton was once recognized as a distinguishing feature of prokaryotes, it is now clear that a number of different bacterial proteins do form filaments in vivo. Despite the critical roles these proteins play in cell shape, genome segregation and cell division, molecular mechanisms have remained obscure in part for lack of electron microscopy-resolution images where these filaments can be seen acting within their cellular context. Here, electron cryotomography was used to image the widely studied model prokaryote Caulobacter crescentus in an intact, near-native state, producing three-dimensional reconstructions of these cells with unprecedented clarity and fidelity. We observed many instances of large filament bundles in various locations throughout the cell and at different stages of the cell cycle. The bundles appear to fall into four major classes based on shape and location, referred to here as ,inner curvature', ,cytoplasmic', ,polar' and ,ring-like'. In an attempt to identify at least some of the filaments, we imaged cells where crescentin and MreB filaments would not be present. The inner curvature and cytoplasmic bundles persisted, which together with their localization patterns, suggest that they are composed of as-yet unidentified cytoskeletal proteins. Thus bacterial filaments are frequently found as bundles, and their variety and abundance is greater than previously suspected. [source] Sarcoplasmic reticulum: The dynamic calcium governor of muscleMUSCLE AND NERVE, Issue 6 2006Ann E. Rossi MS Abstract The sarcoplasmic reticulum (SR) provides feedback control required to balance the processes of calcium storage, release, and reuptake in skeletal muscle. This balance is achieved through the concerted action of three major classes of SR calcium-regulatory proteins: (1) luminal calcium-binding proteins (calsequestrin, histidine-rich calcium-binding protein, junctate, and sarcalumenin) for calcium storage; (2) SR calcium release channels (type 1 ryanodine receptor or RyR1 and IP3 receptors) for calcium release; and (3) sarco(endo)plasmic reticulum Ca2+ -ATPase (SERCA) pumps for calcium reuptake. Proper calcium storage, release, and reuptake are essential for normal skeletal muscle function. We review SR structure and function during normal skeletal muscle activity, the proteins that orchestrate calcium storage, release, and reuptake, and how phenotypically distinct muscle diseases (e.g., malignant hyperthermia, central core disease, and Brody disease) can result from subtle alterations in the activity of several key components of the SR calcium-regulatory machinery. Muscle Nerve, 2006 [source] Identification and quantification of galloyl derivatives, flavonoid glycosides and anthocyanins in leaves of Pistacia lentiscus L.PHYTOCHEMICAL ANALYSIS, Issue 2 2002A. Romani Abstract Separation, identification and quantification of polyphenols was carried out on leaves of Pistacia lentiscus L., an evergreen member of the family Anacardiaceae, using semi-preparative HPLC, HPLC-photodiode array detection and HPLC-MS analysis, together with 1H- and 13C NMR. Three major classes of secondary metabolites were detected: (i) gallic acid and galloyl derivatives of both glucose and quinic acid; (ii) flavonol glycosides, i.e. myricetin and quercetin glycosides; and (iii) anthocyanins, namely delphinidin 3- O -glucoside and cyanidin 3- O -glucoside. Low amounts of catechin were also detected. The concentration of galloyl derivatives was extremely high, representing 5.3% of the leaf dry weight, and appreciable amounts of myricetin derivatives were also detected (1.5% on a dry weight basis). These findings may be useful in establishing a relationship between the chemical composition of the leaf extract and the previously reported biological activity of P. lentiscus, and may also assign a new potential role of P. lentiscus tissue extracts in human health care. Copyright © 2002 John Wiley & Sons, Ltd. [source] Transcriptional profiling of hexaploid wheat (Triticum aestivum L.) roots identifies novel, dehydration-responsive genesPLANT CELL & ENVIRONMENT, Issue 5 2007MOHSEN MOHAMMADI ABSTRACT We used a long-oligonucleotide microarray to identify transcripts that increased or decreased in abundance in roots of dehydration-tolerant hexaploid bread wheat, in response to withholding of water. We observed that the major classes of dehydration-responsive genes (e.g. osmoprotectants, compatible solutes, proteases, glycosyltransferases/hydrolases, signal transducers components, ion transporters) were generally similar to those observed previously in other species and osmotic stresses. More specifically, we highlighted increases in transcript expression for specific genes including those putatively related to the synthesis of asparagine, trehalose, oligopeptide transporters, metal-binding proteins, the gamma-aminobutyric acid (GABA) shunt and transcription factors. Conversely, we noted a decrease in transcript abundance for diverse classes of glutathione and sulphur-related enzymes, specific amino acids, as well as MATE-efflux carrier proteins. From these data, we identified a novel, dehydration-induced putative AP2/ERF transcription factor, which we predict to function as a transcriptional repressor. We also identified a dehydration-induced ,little protein' (LitP; predicted mass: 8 kDa) that is highly conserved across spermatophytes. Using qRT-PCR, we compared the expression patterns of selected genes between two related wheat genotypes that differed in their susceptibility to dehydration, and confirmed that these novel genes were highly inducible by water limitation in both genotypes, although the magnitude of induction differed. [source] A user modeling system for personalized interaction and tailored retrieval in interactive IRPROCEEDINGS OF THE AMERICAN SOCIETY FOR INFORMATION SCIENCE & TECHNOLOGY (ELECTRONIC), Issue 1 2002Diane Kelly We present a user modeling system for personalized interaction and tailored retrieval that (1) tracks interactions over time, (2) represents multiple information needs, both short and long term, (3) allows for changes in information needs over time, (4) acquires and updates the user model automatically, without explicit assistance from the user, and (5) accounts for contextual factors such as topic familiarity and endurance of need. The proposed system contains three major classes of models: general behavioral, personal behavioral and topical. The general behavioral model describes how information search and use behavior can be used to identify and track information needs. The personal behavioral model characterizes an individual user's information search and use behavior with regard to document preference and states of knowledge. Finally, the topical model characterizes the user's information seeking needs. We describe how such a model can be used to personalize search interactions and tailor system responses to individuals across multiple information seeking sessions. [source] The effect of low pH on protein expression by the probiotic bacterium Lactobacillus reuteriPROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 8 2008KiBeom Lee Dr. Abstract The ability of a lactic acid bacterium to survive passage through the gastrointestinal tract is a key point in its function as a probiotic. In this study, protein synthesis by the probiotic bacterium, Lactobacillus reuteri, was analyzed under transiently decreased pH conditions. L. reuteri cells grown to the midexponential growth phase at 37°C were exposed to transient (1,h) low-pH stresses from pH,6.8 to pH,5.0, 4.5, or 4.0. 2-DE allowed us to identify 40 common proteins that were consistently and significantly altered under all three low-pH conditions. PMF was used to identify these 40 proteins, and functional annotation allowed them to be distributed to six major classes: (i) transport and binding proteins; (ii) transcription,translation; (iii) nucleotide metabolism and amino acid biosynthesis; (iv) carbon energy metabolism; (v) pH homeostasis and stress; and (vi) unassigned. These findings provide new insight into the inducible mechanisms underlying the capacity of gastrointestinal L. reuteri to tolerate acid stress. [source] Projections from bed nuclei of the stria terminalis, posterior division: Implications for cerebral hemisphere regulation of defensive and reproductive behaviorsTHE JOURNAL OF COMPARATIVE NEUROLOGY, Issue 4 2004Hong-Wei Dong Abstract The posterior division of the bed nuclei of the stria terminalis has three major nuclei: principal, interfascicular, and transverse, which receive topographically ordered inputs from the medial amygdalar nucleus. The overall pattern of axonal projections from each nucleus was determined in male rats with the Phaseolus vulgaris -leucoagglutinin method. Together, these nuclei project topographically back to the medial amygdalar nucleus, to the adjacent lateral septal nucleus, to the nucleus accumbens and substantia innominata, to hypothalamic parts of the behavior control column, and to the hypothalamic periventricular region, which controls patterned neuroendocrine and autonomic responses. The principal nucleus preferentially innervates septal and hypothalamic regions that control reproductive behavior and visceromotor responses, confirming a similar analysis by Gu et al. (J Comp Neurol [2003] 460:542,562). In contrast, the interfascicular and transverse nuclei differentially innervate septal and hypothalamic regions that control defensive as well as reproductive behaviors. In addition, the transverse nucleus projects significantly to midbrain parts of the behavior control column concerned with foraging/exploratory behavior. All three posterior division nuclei also project to thalamocortical feedback loops (by means of the nucleus reuniens and paraventricular nucleus). These structural data may be interpreted to suggest that the bed nuclei posterior division forms part (pallidal) of a corticostriatopallidal system involved in controlling two major classes of social (defensive and reproductive) behavior. J. Comp. Neurol. 471:396,433, 2004. © 2004 Wiley-Liss, Inc. [source] Glycinergic input of widefield, displaced amacrine cells of the mouse retinaTHE JOURNAL OF PHYSIOLOGY, Issue 15 2009Sriparna Majumdar Glycine receptors (GlyRs) of displaced amacrine cells of the mouse retina were analysed using whole cell recordings and immunocytochemical staining with subunit-specific antibodies. During the recordings the cells were filled with a fluorescent tracer and 11 different morphological types could be identified. The studies were performed in wild-type mice and in mutant mice deficient in the GlyR,1 (Glra1spd-ot, ,oscillator' mouse), the GlyR,2 (Glra2,/,) and the GlyR,3 subunit (Glra3,/,). Based on their responses to the application of exogenous glycine in the retinas of wild-type and mutant mice, the cells were grouped into three major classes: group I cells (comprising the morphological types MA-S5, MA-S1, MA-S1/S5, A17, PA-S1, PA-S5 and WA-S1), group II cells (comprising the morphological types PA-S4, WA-S3 and WA-multi) and ON-starburst cells. For further analysis, spontaneous inhibitory postsynaptic currents (sIPSCs) were measured both in wild-type and mutant mouse retinas. Glycinergic sIPSCs and glycine induced currents of group I cells remained unaltered across wild-type and the three mutant mice (mean decay time constant of sIPSCs, ,,25 ms). Group II cells showed glycinergic sIPSCs and glycine induced currents in wild-type, Glra1spd-ot and Glra3,/, mice (,,25 ms); however, glycinergic currents were absent in group II cells of Glra2,/, mice. Glycine induced currents and sIPSCs recorded from ON-starburst amacrine cells did not differ significantly between wild-type and the mutant mouse retinas (,,50,70 ms). We propose that GlyRs of group II cells are dominated by the ,2 subunit; GlyRs of ON-starburst amacrine cells appear to be dominated by the ,4 subunit. [source] Repression of light signaling by Arabidopsis SPA1 involves post-translational regulation of HFR1 protein accumulationTHE PLANT JOURNAL, Issue 1 2005Jianping Yang Summary Arabidopsis uses two major classes of photoreceptors to mediate seedling de-etiolation. The cryptochromes (cry1 and cry2) absorb blue/ultraviolet-A light, whereas the phytochromes (phyA,phyE) predominantly regulate responses to red/far-red light. Arabidopsis COP1 represses light signaling by acting as an E3 ubiquitin ligase in the nucleus, and is responsible for targeted degradation of a number of photomorphogenesis-promoting factors, including HY5, LAF1, phyA, and HFR1. Distinct light signaling pathways initiated by multiple photoreceptors (including both phytochromes and cryptochromes) eventually converge on COP1, causing its inactivation and nuclear depletion. Arabidopsis SPA1, which encodes a protein structurally related to COP1, also represses light signaling under various light conditions. In this study, we present genetic evidence supporting that HFR1, which encodes a photomorphogenesis-promoting bHLH transcription factor, acts downstream of SPA1 and is required for different subsets of branch pathways of light signaling controlled by SPA1 under different light conditions. We show that SPA1 physically interacts with HFR1 in a yeast two-hybrid assay and an in vitro co-immunoprecipitation assay. We demonstrate that higher levels of HFR1 protein accumulate in the spa1 mutant background under various light conditions, including far-red, red, blue, and white light, whereas a marginal increase in HFR1 transcript level is only seen in dark- and far-red light-grown spa1-100 mutants. Together, our data suggest that repression of light signaling by Arabidopsis SPA1 likely involves post-translational regulation of HFR1 protein accumulation. [source] Detecting Tropical Forests' Responses to Global Climatic and Atmospheric Change: Current Challenges and a Way ForwardBIOTROPICA, Issue 1 2007Deborah A. ClarkArticle first published online: 21 DEC 200 ABSTRACT Because of tropical forests' disproportionate importance for world biodiversity and for the global carbon cycle, we urgently need to understand any effects on these ecosystems from the ongoing changes in climate and atmosphere. This review, intended to complement existing data reviews on this topic, focuses on three major classes of challenges that we currently face when trying to detect and interpret directional changes in tropical forests. One is the very limited existing information on the historical context of study sites. Lasting effects from past climate, natural disturbances, and/or human activities could be significantly affecting current-day processes in tropical forests and need to be investigated for all active field sites. Second, while progress has been made in recent years on standardizing and refining research approaches, a number of methods- and data-limitations continue to affect efforts both to detect within-forest changes and to relate them to ongoing environmental change. Important outstanding needs are improved sampling designs, longer time-series of observations, filling key data gaps, and data access. Finally, forest responses to ongoing environmental change are complex. The effects of many simultaneously changing environmental factors are integrated by the plants, and their responses can involve significant lags, carryovers, and non-linearities. Specifying effects of individual environmental changes, however, is required for accurate ecosystem-process models and thus for projecting future impacts on these forests. After discussing these several types of challenges and ways to address them, I conclude with a priority agenda for this critical area of research. Abstract in Spanish is available at http://www.blackwell-synergy.com/loi/btp. RESUMEN Debido a la importancia desproporcionada de los bosques tropicales para la biodiversidad mundial y para el ciclo global del carbono, es urgente identificar los impactos sobre estos ecosistemas provocados por los cambios actuales en el clima y en la atmósfera. Este artículo de revisión, escrito con el propósito de complementar otras revisiones recientes, se enfoca en tres principales clases de retos que enfrentamos actualmente en la detección e interpretación de cambios direccionales en los bosques tropicales. Primero es la gran escasez de información histórica acerca de los sitios de estudio. Los procesos actuales en los bosques tropicales pueden reflejar los efectos prolongados del pasado climático, las perturbaciones naturales y/o las actividades humanas, por lo que deben de ser investigados en todos los sitios actuales de estudio. Segundo, a pesar de avances recientes en la estandarización y el refinamiento de los métodos de investigación, nuestra habilidad para detectar cambios en los bosques y ligarlos a los grandes cambios ambientales sigue siendo limitada. Para garantizar avances en el área se requiere mejorar los diseños de muestreo, extender las series de observación en el tiempo a plazos mayores, llenar ciertos vacíos claves en el conocimiento, y facilitar el acceso a los datos existentes. Por último, se requiere de enfoques que tomen en cuenta la complejidad de las respuestas de los bosques a los cambios ambientales. Las plantas integran los efectos de cambios simultáneos en múltiples factores ambientales, y sus respuestas pueden ser no lineales e incluir efectos de retraso y acarreo. No obstante, es importante también especificar los efectos individuales de los diferentes cambios ambientales para afinar los modelos de procesos a nivel del ecosistema, y así poder proyectar los impactos futuros sobre estos bosques. Después de discutir dichos retos y estrategias para enfrentarlos, concluyo con una agenda de prioridades para esta área crítica de investigación. [source] Volumetric MRI studies of mood disorders: do they distinguish unipolar and bipolar disorder?BIPOLAR DISORDERS, Issue 2 2002Stephen M Strakowski The authors reviewed magnetic resonance imaging volumetric imaging results in major mood disorders, particularly comparing similarities and differences from studies of bipolar disorder and unipolar major depression. Abnormalities of cerebral brain regions appear inconsistently in mood disorders and, when present, typically consist of decreased frontal or prefrontal cortical volumes in both unipolar depression and bipolar disorder. In contrast, subcortical and medial temporal abnormalities are more commonly observed and are different between these two major classes of affective illness. Specifically, whereas structural enlargement of the basal ganglia and amygdala have been observed in bipolar disorder, in unipolar depression, these structures appear to be smaller in patients than healthy subjects. These findings suggest that affective illnesses may share in common an underdeveloped or atrophied prefrontal region, leading to loss of cortical modulation of limbic emotional networks. The effect of this loss results in unipolar depression or cycling (mania with depression) depending on the abnormalities of the subcortical structures involved. The cerebellum may also play a role in the presentation of mood disorders. This hypothesis remains speculative as much more research is needed to specifically examine how morphometric brain abnormalities translate into the neurophysiologic deficits that produce mood disorders. [source] Antiplatelet Strategies: Evaluating Their Current Role in the Setting of Acute Coronary SyndromesCLINICAL CARDIOLOGY, Issue S1 2008Eugene Braunwald Abstract Numerous clinical trials have established the value of antiplatelet therapies for acute coronary syndromes (ACS). Aspirin (ASA), thienopyridines (i.e., clopidogrel and ticlopidine) and GP IIb/IIIa antagonists comprise the major classes of antiplatelet therapies demonstrated to be of benefit in the treatment of ACS and for the prevention of thrombotic complications of percutaneous coronary intervention (PCI). Clopidogrel is beneficial when administered before and after PCI, and is more effective when combined with either ASA or GP IIb/IIIa inhibitors in preventing post-PCI complications, coronary subacute stent thrombosis, and thrombotic events in general. It is currently unclear whether a higher loading dose of clopidogrel (600 mg) is better than the standard loading dose (300 mg), how long therapy should continue, and which maintenance dose is optimal. The role of the GP IIb/IIIa antagonists in ACS is less clear due to conflicting data from several studies with different patient populations. Currently, it appears that the use of GP IIb/IIIa antagonists might be most beneficial in high-risk ACS patients scheduled to undergo PCI, who demonstrate non-ST-segment elevation myocardial infarction and elevated troponin levels. Copyright © 2008 Wiley Periodicals, Inc. [source] | |||||||||||||||||||||||||||||||