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Infection Frequencies (infection + frequency)
Selected AbstractsVariation in mistletoe seed deposition: effects of intra- and interspecific host characteristicsECOGRAPHY, Issue 2 2002Juliann Eve Aukema We investigated differences in host infection by a desert mistletoe, Phoradendron californicum, and examined one of the processes that contributes to these differences: variation in seed deposition among host individuals and species. In the Sonoran Desert, P. californicum parasitizes the sympatric leguminous trees Olneya tesota, Cercidium microphyllum, Prosopis velutina, Acacia constricta, and Acacia greggii. We hypothesized that seed deposition depends on host height and crown architecture. At a site in Arizona, frequency of infection did not reflect host relative abundance. Olneya tesota was parasitized at a higher frequency than expected from its abundance and maintained the highest mistletoe loads per individual host. In contrast, P. velutina was infected less frequently than expected. Infection frequency increased with host tree height for all hosts. Mistletoe seed deposition by avian dispersers differed among host species and was disproportionately high in O. tesota and P. velutina. Seed deposition was higher in infected than in non-infected host trees, and increased with tree height in O. tesota but not in C. microphyllum. We suspect that increased seed deposition with height in O. tesota may be due to the preference of seed-dispersing birds for higher perches. Some host tree species, such as C. microphyllum and A. constricta, probably received fewer mistletoe seeds because birds avoid hosts with dense and spiny crowns. Mistletoe populations are plant metapopulations in which host trees are patches and the frequency of infection in each host species/patch type is the result of interspecific differences in the balance between mistletoe colonization and extinction. From this perspective, our study of host use and seed dispersal is a metapopulation study of patch occupancy and propagule distribution among available patch types. Our seed-dispersal study demonstrates that the mechanisms that create pattern in patchy plant populations can be investigated in mistletoe systems. [source] Variation in the abundance of fungal endophytes in fescue grasses along altitudinal and grazing gradientsECOGRAPHY, Issue 3 2007Gustaf Granath Epichloë festucae, a common fungal symbiont of the genus Festuca (family Poaceae), can provide its host plant with protection against herbivores. However, infection might also be associated with a cost to its host plant. We examined the distribution of Epichloë festucae infection in natural populations of three fescue grasses, Festuca rubra, F. ovina and F. vivipara, on mountains in northern Sweden to determine whether infection frequency varied with reindeer Rangifertarandus grazing pressure and altitude. Two differently-scaled approaches were used: 1) infection frequency was measured at a local scale along ten elevational transects within a ca 400 km2 area and 2) infection frequency was measured on a regional scale along elevational transects on 17 mountains classified as having a history of high or low reindeer grazing pressure. Mean infection frequencies in F. rubra were 10% (vegetative tillers at a local scale), and 23% (flowering culms at a regional scale), and in F. ovina they were 13% (local scale) and 15% (regional scale). Endophyte infection frequency in F. vivipara, was, on average, 12% (local scale) and 37% (regional scale). In F. rubra, infection decreased significantly with increasing altitude at both the local and regional scale, and was positively correlated with grazing pressure. In F. ovina, an opposite trend was found at the regional scale: infection frequency increased significantly with increasing altitude, while no discernible distribution pattern was observed at the local scale. No elevational trends were observed in infection of F. vivipara. These patterns in the distribution of endophyte-infected grasses in non-agricultural ecosystems may be explained by both biotic (grazing) and abiotic factors (altitude). Differences in ecology and life history of the studied grass species may also be of importance for the different results observed among species. [source] EVOLUTION OF INCOMPATIBILITY-INDUCING MICROBES IN SUBDIVIDED HOST POPULATIONSEVOLUTION, Issue 2 2009Ralph Haygood Many insects, other arthropods, and nematodes harbor maternally inherited bacteria inducing "cytoplasmic incompatibility" (CI), reduced egg hatch when infected males mate with uninfected females. Although CI drives the spread of these microbes, selection on alternative, mutually compatible strains in panmictic host populations does not act directly on CI intensity but favors higher "effective fecundity," the number of infected progeny an infected female produces. We analyze the consequences of host population subdivision using deterministic and stochastic models. In subdivided populations, effective fecundity remains the primary target of selection. For strains of equal effective fecundity, if population density is regulated locally (i.e., "soft selection"), variation among patches in infection frequencies may induce change in the relative frequencies of the strains. However, whether this change favors stronger incompatibility depends on initial frequencies. Demographic fluctuations maintain frequency variation that tends to favor stronger incompatibility. However, this effect is weak; even with small patches, minute increases in effective fecundity can offset substantial decreases in CI intensity. These results are insensitive to many details of host life cycle and migration and to systematic outbreeding or inbreeding within patches. Selection acting through transfer between host species may be required to explain the prevalence of CI. [source] Fungal endophytes reduce regrowth and affect competitiveness of meadow fescue in early succession of pasturesGRASS & FORAGE SCIENCE, Issue 3 2010S. Saari Abstract Systemic- and seed-transmitted fungal endophytes are suggested to enhance competitive dominance of agronomic grasses by increasing plant growth and defence against herbivores. We studied whether Neotyphodium uncinatum endophyte infection frequencies of meadow fescue (Schedonorus pratensis) and botanical composition of pastures are affected by 4, 5, 7 and 21 years of grazing by dairy cattle. We then examined with one greenhouse and two field experiments, whether endophyte infection and clipping affect regrowth of young or mature plants relative to nutrient availability in soil. The frequencies of infected plants and the number of plant species were less in grazed parts of the pastures. Endophytes significantly reduced relative regrowth and dry biomass of regrowth of the grass irrespective of nutrient levels in a 1-year-old field (on an average 18% in 2 months) and under high nutrient conditions in the greenhouse experiment (on an average 3% in 3 months) respectively. However, effects of endophytes were not detected in 5-year-old fields and under low nutrient conditions in the greenhouse. In contrast to past studies, our results demonstrate that grazing may negatively affect endophyte,grass symbiosis and number of plant species of successional pastures, and suggest that the effects of endophytes may be linked to the ontogeny of the host. [source] Contrasting infection frequencies of Neotyphodium endophyte in naturalized Italian ryegrass populations in Japanese farmlandsGRASSLAND SCIENCE, Issue 2 2010Masayuki Yamashita Abstract Neotyphodium endophytes often confer benefits to their host grasses and may enhance invasiveness of some grasses. The knowledge of infection frequencies of endophytes among invading weed populations is necessary to understand the relationships between endophyte infection and invasiveness. Here we present data on infection frequencies of Italian ryegrass (Lolium multiflorum Lam.), an important weed in some farmlands in Japan, persisting in contrasting farmlands: a terraced paddy field and a wheat-soybean double-cropped field in the western region of Shizuoka prefecture, Japan. The terraced paddy site is a mosaic of several landscape elements such as paddy fields, levees, fallow and abandoned fields, with a high percentage of non-crop area. Rice (Oryza sativa L.) has been cultivated for more than a decade with no application of chemical fertilizers, pesticides and fungicides. The wheat-soybean field is characterized by the aggregation of large-scaled fields that were originally reconstructed paddy fields, showing a low percentage of non-crop area. Wheat and soybean have been grown as winter and summer crops, respectively, using chemical fertilizers and herbicides. We examined the presence or absence of endophytes in a total of 1200 seeds sampled from the two Italian ryegrass populations. The terraced paddy population exhibited a markedly high infection frequency (91.0%), due possibly to selective feeding of non-infected seeds by insects. In contrast, the wheat-soybean farmland population showed almost no infection (1.1%), whereas the putative source of the invasion in the proximity exhibited a relatively high infection rate (64.4%). Such a micro-scale variation in infection frequencies may be attributable to a loss in endophyte viability within the wheat-soybean field. The findings suggest that endophyte infection frequency may markedly differ among the Italian ryegrass populations even within the same region, presumably depending on the abundance of the seed-eating insects, farmland management regimes and/or environmental conditions such as soil humidity. [source] Environmental stresses mediate endophyte,grass interactions in a boreal archipelagoJOURNAL OF ECOLOGY, Issue 2 2010Nora M. Saona Summary 1.,Both evolutionary theory and empirical evidence from agricultural research support the view that asexual, vertically transmitted fungal endophytes are typically plant mutualists that develop high infection frequencies within host grass populations. In contrast, endophyte,grass interactions in natural ecosystems are more variable, spanning the range from mutualism to antagonism and comparatively little is known about their range of response to environmental stress. 2.,We examined patterns in endophyte prevalence and endophyte,grass interactions across nutrient and grazing (from Greylag and Canada geese) gradients in 15 sites with different soil moisture levels in 13 island populations of the widespread grass Festuca rubra in a boreal archipelago in Sweden. 3.,In the field, endophyte prevalence levels were generally low (range = 10,53%) compared with those reported from agricultural systems. Under mesic-moist conditions endophyte prevalence was constantly low (mean prevalence = 15%) and was not affected by grazing pressure or nutrient availability. In contrast, under conditions of drought, endophyte prevalence increased from 10% to 53% with increasing nutrient availability and increasing grazing pressure. 4.,In the field, we measured the production of flowering culms, as a proxy for host fitness, to determine how endophyte-infected plants differed from uninfected plants. At dry sites, endophyte infection did not affect flowering culm production. In contrast, at mesic-moist sites production of flowering culms in endophyte-infected plants increased with the covarying effects of increasing nutrient availability and grazing pressure, indicating that the interaction switched from antagonistic to mutualistic. 5.,A concurrent glasshouse experiment showed that in most situations, the host appears to incur some costs for harbouring endophytes. Uninfected grasses generally outperformed infected grasses (antagonistic interaction), while infected grasses outperformed uninfected grasses (mutualistic interaction) only in dry, nutrient-rich conditions. Nutrient and water addition affected tiller production, leaf number and leaf length differently, suggesting that tillers responded with different strategies. This emphasizes that several response variables are needed to evaluate the interaction. 6.,Synthesis. This study found complex patterns in endophyte prevalence that were not always correlated with culm production. These contrasting patterns suggest that the direction and strength of selection on infected plants is highly variable and depends upon a suite of interacting environmental variables that may fluctuate in the intensity of their impact, during the course of the host life cycle. [source] Prevailing triple infection with Wolbachia in Callosobruchus chinensis (Coleoptera: Bruchidae)MOLECULAR ECOLOGY, Issue 2 2002Natsuko Kondo Abstract Prevailing triple infection with three distinct Wolbachia strains was identified in Japanese populations of the adzuki bean beetle, Callosobruchus chinensis. When a polymerase chain reaction (PCR) assay was conducted using universal primers for ftsZ and wsp, Wolbachia was detected in all the individuals examined, 288 males and 334 females from nine Japanese populations. PCR,restriction fragment length polymorphism (RFLP) analysis of cloned wsp gene fragments from single insects revealed that three types of wsp sequences coexist in the insects. Molecular phylogenetic analysis of the wsp sequences unequivocally demonstrated that C. chinensis harbours three phylogenetically distinct Wolbachia, tentatively designated as wBruCon, wBruOri and wBruAus, respectively. Diagnostic PCR analysis using specific primers demonstrated that, of 175 males and 235 females from nine local populations, infection frequencies with wBruCon, wBruOri and wBruAus were 100%, 96.3% and 97.0%, respectively. As for the infection status of individuals, triple infection (93.7%) dominated over double infection (6.1%) and single infection (0.2%). The amounts of wBruCon, wBruOri and wBruAus in field-collected adult insects were analysed by using a quantitative PCR technique in terms of wsp gene copies per individual insect. Irrespective of original populations, wBruCon and wBruOri (107,108wsp copies/insect) were consistently greater in amount than wBruAus (106,107wsp copies/insect), suggesting that the population sizes of the three Wolbachia strains are controlled, although the mechanism is unknown. Mating experiments suggested that the three Wolbachia cause cytoplasmic incompatibility at different levels of intensity. [source] Are endophytic fungi defensive plant mutualists?OIKOS, Issue 1 2002Stanley H. Faeth Endophytic fungi, especially asexual, systemic endophytes in grasses, are generally viewed as plant mutualists, mainly through the action of mycotoxins, such as alkaloids in infected grasses, which protect the host plant from herbivores. Most of the evidence for the defensive mutualism concept is derived from studies of agronomic grass cultivars, which may be atypical of many endophyte-host interactions. I argue that endophytes in native plants, even asexual, seed-borne ones, rarely act as defensive mutualists. In contrast to domesticated grasses where infection frequencies of highly toxic plants often approach 100%, natural grass populations are usually mosaics of uninfected and infected plants. The latter, however, usually vary enormously in alkaloid levels, from none to levels that may affect herbivores. This variation may result from diverse endophyte and host genotypic combinations that are maintained by changing selective pressures, such as competition, herbivory and abiotic factors. Other processes, such as spatial structuring of host populations and endophytes that act as reproductive parasites of their hosts, may maintain infection levels of seed-borne endophytes in natural populations, without the endophyte acting as a mutualist. [source] Variation in the abundance of fungal endophytes in fescue grasses along altitudinal and grazing gradientsECOGRAPHY, Issue 3 2007Gustaf Granath Epichloë festucae, a common fungal symbiont of the genus Festuca (family Poaceae), can provide its host plant with protection against herbivores. However, infection might also be associated with a cost to its host plant. We examined the distribution of Epichloë festucae infection in natural populations of three fescue grasses, Festuca rubra, F. ovina and F. vivipara, on mountains in northern Sweden to determine whether infection frequency varied with reindeer Rangifertarandus grazing pressure and altitude. Two differently-scaled approaches were used: 1) infection frequency was measured at a local scale along ten elevational transects within a ca 400 km2 area and 2) infection frequency was measured on a regional scale along elevational transects on 17 mountains classified as having a history of high or low reindeer grazing pressure. Mean infection frequencies in F. rubra were 10% (vegetative tillers at a local scale), and 23% (flowering culms at a regional scale), and in F. ovina they were 13% (local scale) and 15% (regional scale). Endophyte infection frequency in F. vivipara, was, on average, 12% (local scale) and 37% (regional scale). In F. rubra, infection decreased significantly with increasing altitude at both the local and regional scale, and was positively correlated with grazing pressure. In F. ovina, an opposite trend was found at the regional scale: infection frequency increased significantly with increasing altitude, while no discernible distribution pattern was observed at the local scale. No elevational trends were observed in infection of F. vivipara. These patterns in the distribution of endophyte-infected grasses in non-agricultural ecosystems may be explained by both biotic (grazing) and abiotic factors (altitude). Differences in ecology and life history of the studied grass species may also be of importance for the different results observed among species. [source] Contrasting infection frequencies of Neotyphodium endophyte in naturalized Italian ryegrass populations in Japanese farmlandsGRASSLAND SCIENCE, Issue 2 2010Masayuki Yamashita Abstract Neotyphodium endophytes often confer benefits to their host grasses and may enhance invasiveness of some grasses. The knowledge of infection frequencies of endophytes among invading weed populations is necessary to understand the relationships between endophyte infection and invasiveness. Here we present data on infection frequencies of Italian ryegrass (Lolium multiflorum Lam.), an important weed in some farmlands in Japan, persisting in contrasting farmlands: a terraced paddy field and a wheat-soybean double-cropped field in the western region of Shizuoka prefecture, Japan. The terraced paddy site is a mosaic of several landscape elements such as paddy fields, levees, fallow and abandoned fields, with a high percentage of non-crop area. Rice (Oryza sativa L.) has been cultivated for more than a decade with no application of chemical fertilizers, pesticides and fungicides. The wheat-soybean field is characterized by the aggregation of large-scaled fields that were originally reconstructed paddy fields, showing a low percentage of non-crop area. Wheat and soybean have been grown as winter and summer crops, respectively, using chemical fertilizers and herbicides. We examined the presence or absence of endophytes in a total of 1200 seeds sampled from the two Italian ryegrass populations. The terraced paddy population exhibited a markedly high infection frequency (91.0%), due possibly to selective feeding of non-infected seeds by insects. In contrast, the wheat-soybean farmland population showed almost no infection (1.1%), whereas the putative source of the invasion in the proximity exhibited a relatively high infection rate (64.4%). Such a micro-scale variation in infection frequencies may be attributable to a loss in endophyte viability within the wheat-soybean field. The findings suggest that endophyte infection frequency may markedly differ among the Italian ryegrass populations even within the same region, presumably depending on the abundance of the seed-eating insects, farmland management regimes and/or environmental conditions such as soil humidity. [source] Human parechovirus 1 infections in young children,no association with type 1 diabetesJOURNAL OF MEDICAL VIROLOGY, Issue 4 2007Sisko Tauriainen Abstract The epidemiology, transmission and clinical symptoms of human parechoviruses [HPeV, classified earlier as enteroviruses; echovirus 22 (HPeV1) and echovirus 23 (HPeV2)] remain poorly characterized. Enteroviruses and one parechovirus species, the Ljungan virus, have been associated with type 1 diabetes in humans and rodents. The occurrence of human parechovirus 1 (HPeV1) infections in young children and their possible association with type 1 diabetes was evaluated. The prospective birth cohort study comprised 221 Finnish children carrying genetic type 1 diabetes susceptibility and who were observed from birth. Thirty-four children developed multiple diabetes-associated autoantibodies, and 18 children progressed to clinical type 1 diabetes during the follow-up. HPeV1 infections were diagnosed by measuring neutralizing antibodies from the follow-up sera taken every 3,12 months. In addition, viral RNA was analysed by RT-PCR from stool samples taken every month from six of the participants. HPeV1 infections were found to occur early in childhood. The median age of infection was 18 months and 20% of the children had had an infection by the age of 1 year. The number of infections started to increase from the age of 6 months and most children had their first infection by 36 months. Nearly all (99%) mothers were HPeV1 antibody positive. No difference was found in infection frequency between boys and girls, nor between prediabetic, diabetic and control subjects. Most infections (87%) occurred during autumn, winter and spring. J. Med. Virol. 79:457,462, 2007. © 2007 Wiley-Liss, Inc. [source] Aggressiveness of Phytophthora infestans and phenotypic analysis of resistance in wild Petota accessions in EcuadorPLANT PATHOLOGY, Issue 4 2007M. G. Chacón The aggressiveness of four Phytophthora infestans isolates collected from wild and cultivated potato species (sect. Petota) and the level of resistance of nine Petota species were assessed in the highland tropics of Ecuador. For this, isolates of P. infestans were inoculated on whole plants of Petota species in the field and net house and six epidemiological components , infection frequency (IF), incubation period (IP), latent period (LP), lesion size (LS), lesion growth rate (LGR), and relative area under the lesion expansion curve (RAULEC) , were measured during a single infection cycle. Additionally, host specificity was determined by testing for a significant host by pathogen interaction using the same components. The results showed significant differences among isolates of the EC-1 clonal lineage for IP, IF, and RAULEC. Significant differences among isolates were not found for the other components measured. There were significant differences in resistance among the accessions of Petota hosts tested. RAULEC, LGR, LP, and LS were in general more adequate in differentiating among the more resistant and more susceptible accessions but the importance of each component varied with host species. There was slight and inconsistent evidence for the existence of host specificity in some isolates of Petota hosts. IP was the only component for which a significant host by isolate interaction was observed and in most cases the isolates had the greatest aggressiveness on their hosts of origin. [source] Euplotespora binucleata n. gen., n. sp. (Protozoa: Microsporidia), a Parasite Infecting the Hypotrichous Ciliate Euplotes woodruffi, with Observations on Microsporidian Infections in CiliophoraTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 3 2008SERGEI I. FOKIN ABSTRACT. A new microsporidian species, Euplotespora binucleata n. gen., n. sp., from the brackish-water ciliate Euplotes woodruffi is described and defined on the basis of life history characteristics, light and electron microscopic features, and small subunit (SSU) ribosomal DNA (rDNA) sequencing. The life cycle of E. binucleata n. sp. probably has rather short merogonic and relatively long sporogonic phases. Some uninuclear meronts and sporonts, along with diplokaryotic sporoblasts and spores, were found in experimentally infected host cells. Such a peculiar life cycle has been induced experimentally in Euplotes eurystomus and constitutively microsporidian-free stocks of E. woodruffi. Spores of E. binucleata n. sp. are monomorphic, ovoid,cylindrical in shape, 3.44±0.17 × 1.65±0.22 ,m in size, and characterized by a diplokaryotic condition and a large posterior vacuole. The polar tube is isofilar, 4.5,5.5 ,m in length when ejected, and lacking a distinctive coiled region (half-coiled). The polaroplast is divided into two regions: the anterior part has a few lamellae close to the anchoring disc; and the posterior part is a rounded body (sack), about one-quarter of the spore length. Spores do not appear to cluster together as a group. Each spore is surrounded by a sporophorous membrane closely adjacent to the exospore layer. A phylogenetic analysis of SSU rDNA sequences by different methods placed E. binucleata n. sp. in a clade with representatives of the microsporidian genera Cystosporogenes and Vittaforma. Observations of microsporidia in several other ciliates are discussed in view of the microsporidian infection frequency in the phylum Ciliophora. [source] Fungal community diversity and soil health in intensive potato cropping systems of the east Po valley, northern ItalyANNALS OF APPLIED BIOLOGY, Issue 2 2009L.M. Manici Abstract An ecological approach was used to investigate the relationship between diversity of soil fungal communities and soil-borne pathogen inoculum in a potato growing area of northern Italy affected by yield decline. The study was performed in 14 sites with the same tillage management practices: 10 named ,potato sites', that for many years had been intensely cultivated with potatoes, and 4 named ,rotation sites', subject to a 4-year rotation without potatoes or any recurrent crop for many years. Fungal communities were recorded using conventional (soil fungi by plate count and endophytic fungi as infection frequency on pot-grown potato plant roots in soil samples) and molecular approaches [Basidiomycetes and Ascomycetes with specific and denaturing gradient gel electrophoresis (DGGE) analysis]. Diversity of fungal communities in potato sites was significantly lower than that in rotation sites. In addition, fungal communities in rotation sites showed lower Berger,Parker dominance than those in the potato sites, suggesting that rotation sites had a higher diversity as well as a better fungal community balance than potato sites. The ANalysis Of SIMilarity test of soil fungi and root endophytic fungi revealed that the two cropping systems differed significantly for species composition. Root endophytic fungal communities showed a greater ability to colonise potato roots in soil samples from potato sites than those from rotation sites. Moreover, the majority of endophytic root fungal community species in potato sites belonged to the potato root rot complex and storage disease (Colletotrichum coccodes, Fusarium solani and Fusarium oxysporum), while those in rotation sites were mainly ubiquitous or saprobic fungi. Soil rDNA analyses showed that Ascomycetes were much more frequent than Basidiomycetes in all the soils examined. DGGE analysis, with the Ascomycete-specific primer (ITS1F/ITS4A), did not reveal distinctions between the communities found at the potato and rotation sites, although the same analysis showed differences between the communities of Basidiomycetes (specific primer ITS1F/ITS4B). These findings showed that recurrent potato cropping affected diversity and composition of soil fungal communities and induced a shift in specialisation of the endophytic fungi towards potato. [source] Extensive astrocyte infection is prominent in human immunodeficiency virus,associated dementia,ANNALS OF NEUROLOGY, Issue 2 2009Melissa J. Churchill PhD Astrocyte infection with human immunodeficiency virus (HIV) is considered rare, so astrocytes are thought to play a secondary role in HIV neuropathogenesis. By combining double immunohistochemistry, laser capture microdissection, and highly sensitive multiplexed polymerase chain reaction to detect HIV DNA in single astrocytes in vivo, we showed that astrocyte infection is extensive in subjects with HIV-associated dementia, occurring in up to 19% of GFAP+ cells. In addition, astrocyte infection frequency correlated with the severity of neuropathological changes and proximity to perivascular macrophages. Our data indicate that astrocytes can be extensively infected with HIV, and suggest an important role for HIV-infected astrocytes in HIV neuropathogenesis. Ann Neurol 2009;66:253,258 [source] | |||||||||||||||||||||||||