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Independent Observations (independent + observation)
Selected AbstractsTooth row counts, vicariance, and the distribution of the sand tiger shark Carcharias taurusECOGRAPHY, Issue 5 2003Luis O. Lucifora Geographic variation in tooth row counts among sand tiger sharks Carcharias taurus (Chondrichthyes), from the SW Atlantic, NW Atlantic and the East China Sea is analyzed in this paper. We found significant differences between sand tigers from the SW Atlantic (Southern Hemisphere population) and each of the other two (Northern Hemisphere) regions in the number of upper lateral tooth rows, and between individuals from the SW Atlantic and the East China Sea in the total number of upper tooth rows. Sand tiger sharks from the two Northern Hemisphere populations did not differ in any of the studied variables. Our results agree with comparisons of vertebral counts between sand tiger sharks from Southern and Northern Hemispheres. Both lines of evidence suggest that Southern and Northern Hemisphere populations of C. taurus were isolated to a larger extent than populations of the Northern Hemisphere. The fossil record of the genus Carcharias begins in the Early Cretaceous and C. taurus is certainly known since the Late Miocene. During the Miocene, the Tethys Sea separating northern and southern land masses was still present and it provided a continuous temperate shallow sea that could allow dispersal of sand tiger sharks along Northern Hemisphere seas. Independent observations on the distribution and evolutionary history of the genera Myripristis, Neoniphon, Sargocentron and Aphanius, and genetic studies on the temperate shark genus Mustelus that indicate a close relationship between the Indo-Pacific M. manazo and the Mediterranean M. asterias suggest that this hypothesis is plausible and deserves to be tested. [source] Predictability of early stages of primary succession in post-mining landscapes of Lower Lusatia, GermanyAPPLIED VEGETATION SCIENCE, Issue 1 2001Gerhard Wiegleb Abstract. The predictability of early primary succession in post-mining landscapes of eastern Germany was studied at sites 5,70 yr following dumping. This chronosequence was investigated using indirect ordination methods. The position of the vegetation types in the ordination diagram was found not to infer any temporal sequence. Independent observations show that the change of vegetation type is slow and does not necessarily occur among types adjacent in the ordination diagram. Furthermore, direct ordination revealed that environmental parameters such as pH, the levels of available phosphate and organic carbon as well as the age of the study sites do not significantly account for the variance. Instead, attention needs to be paid to the influence of spatial aspects and also what recultivation measures have been carried out. A detailed account of the vegetation dynamics of individual sample plots showed - depending on the respective vegetation type - divergence, convergence, and fluctuation at the smallest spatial scale. While the species richness of the sample plots remained more or less constant after initial colonization, mean vegetation cover continuously increases with age, although some sites still remain free of vegetation after as long as 70 yr. No general trend in dominant life forms was indicated. A conceptual model of early succession mechanisms is outlined and five basic mechanisms are identified (i.e. site availability, site suitability, availability of diaspores, strategies of colonizing species and biotic interactions). Their respective importance in three different stages of early succession is estimated and compared. The predictability of vegetation dynamics at each stage is rated differently. [source] New pulsating white dwarfs in cataclysmic variables,MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY: LETTERS (ELECTRONIC), Issue 1 2006R. Nilsson ABSTRACT The number of discovered non-radially pulsating white dwarfs (WDs) in cataclysmic variables (CVs) is increasing rapidly by the aid of the Sloan Digital Sky Survey (SDSS). We performed photometric observations of two additional objects, SDSS J133941.11+484727.5 (SDSS 1339), independently discovered as a pulsator by Gänsicke et al., and SDSS J151413.72+454911.9, which we identified as a CV/ZZ Ceti hybrid. In this Letter we present the results of the remote observations of these targets performed with the Nordic Optical Telescope (NOT) during the Nordic,Baltic Research School at Mol,tai Observatory, and follow-up observations executed by NOT in service mode. We also present three candidates we found to be non-pulsating. The results of our observations show that the main pulsation frequencies agree with those found in previous CV/ZZ Ceti hybrids, but specifically for SDSS 1339 the principal period differs slightly between individual observations and also from the recent independent observation by Gänsicke et al. Analysis of SDSS colour data for the small sample of pulsating and non-pulsating CV/ZZ Ceti hybrids found so far seems to indicate that the r,i colour could be a good marker for the instability strip of this class of pulsating WDs. [source] Study of the space,time effects in the concentration of airborne pollutants in the Metropolitan Region of Rio de JaneiroENVIRONMETRICS, Issue 4 2003Marina Silva Paez Abstract In this article, we present an application of models with temporal and spatial components, from the Bayesian point of view, on data pollutants collected in 16 different monitoring sites located in the Metropolitan Area of Rio de Janeiro during 1999. All the models considered here assume conditionally independent observations, with a mean specified by the sum of random temporal and spatial components and a linear function of the maximum daily temperature and indicators of the day of the week. Our aim here is to analyze distinct specifications for the components, assuming different kinds of modeling that are not usually compared. The comparison is based on the posterior predictive loss function proposed by Gelfand and Ghosh (1998). The best specifications for the spatial component were the ones which considered a geostatistical approach to its correlation function. The best specification for the temporal component was the stationary autoregressive form. The pollutant concentrations were interpolated in a grid of points in the area of higher population density at a fixed period of time for the selected model. Copyright © 2003 John Wiley & Sons, Ltd. [source] Using patch studies to link mesoscale patterns of feeding and growth in larval fish to environmental variabilityFISHERIES OCEANOGRAPHY, Issue 4 2002John F. Dower We present results from a series of three patch studies designed to examine links between environmental variability and mesoscale patterns of feeding and growth of larval radiated shanny (Ulvaria subbifurcata). We examine the effects of variability in temperature, turbulence and prey concentration on both the mean (i.e. population level) and the variance (i.e. individual level) of larval feeding and growth rates among the three bays. Although both gut fullness and growth rates differ significantly between bays, our results show only weak environmental influences. When larvae are pooled across bays (i.e. treated as independent observations), environmental factors generally explain <4% of the variability in gut fullness. When treated as daily mean residuals, however, temperature accounts for 41% of the variability in mean gut fullness, while both temperature and prey concentration also explain significant portions of the variance in gut fullness (38 and 43%, respectively). Between-bay differences in larval growth rates are consistent with patterns of temperature variation but not with patterns of prey availability. Studies relying on tracking a single patch of larvae typically suffer from having too few observations to detect significant relationships between feeding or growth and environmental variables. By following three patches we collected a larger number of observations. However, as we encountered only a limited range of environmental conditions it remains difficult to adequately assess the role of environmental factors. In part, this problem stems from the inability of fisheries oceanographers to track the recent environmental history of individual larvae on the same fine scales currently employed to collect biological data (e.g. guts and otoliths) on individuals. [source] Soil organic carbon contents in long-term experimental grassland plots in the UK (Palace Leas and Park Grass) have not changed consistently in recent decadesGLOBAL CHANGE BIOLOGY, Issue 7 2009D. W. HOPKINS Abstract A recent report of widespread declines in soil organic C (SOC) in the UK over the 10,25 years until the early 2000s has focussed attention on the importance of resampling previously characterized sites to assess long-term trends in SOC contents and the importance of soils as a potentially volatile and globally significant reservoir of terrestrial C. We have used two sets of long-term experimental plots which have been under constant and known management for over a century and for which historical data exist that allow comparison over recent decades to determine what, if any, changes in SOC content have occurred. The plots used are the Palace Leas (PL) Meadow Hay Plots in north-east England (UK) established in 1897, and from the Park Grass (PG) Continuous Hay experiment established in 1856 at Rothamsted in south-east England. Collectively, these plots represent the only grassland sites in the UK under long-term management where changes in SOC over several decades can be assessed, and are probably unique in the world. The plots have received different manure and fertilizer treatment and have been under known management for at least 100 years. In 1982, total SOC contents were determined for the 0,27 cm layer of six of the PL plots using measurements of SOC concentrations, bulk density and soil depth. In 2006, the same six PL plots were resampled and SOC contents determined again. Four of the plots showed no net change in SOC content, but two plots showed net loss of SOC of 15% and 17% (amounting to decreases of 18 and 15 t C ha,1) since 1982. However, these differences in total SOC content were in a similar range to the variations in bulk density (6,31%) with changing soil water content. In 1959, the soil masses and SOC concentrations to 23 cm depth were measured on six PG plots with fertilizer and manure treatments corresponding closely with those measured on PL. In 2002, the SOC concentrations on the same plots were measured again. On three of the PG plots, SOC concentrations had declined by 2,10%, but in the other three it had increased by 4,8% between 1959 and 2002. If it is assumed that the soil bulk density had not changed over this period, the losses of SOC from the top soils ranged range from 10 to 3 t C ha,1, while the gains ranged from 4 to 7 t C ha,1. When the differences with time in SOC contents for the six PL and the six PG plots were examined using paired t -tests, that is, regarding the plots as two sets of six replicate permanent grasslands, there were no significant differences between 1982 and 2006 for the PL plots or between 1959 and 2002 for the PG plots. Thus, these independent observations on similar plots at PL and PG indicate there has been no consistent decrease in SOC stocks in surface soils under old, permanent grassland in England in recent decades, even though meteorological records for both sites indicate significant warming of the soil and air between 1980 and 2000. Because the potential influences of changes in management or land use have been definitively excluded, and measured rather than derived bulk densities have been used to convert from SOC concentrations to SOC amounts, our observations question whether for permanent grassland in England, losses in SOC in recent decades reported elsewhere can be attributed to widespread environmental change. [source] The long and winding road to RNA editing in plant mitochondria: The Tübingen-Berlin chapter,IUBMB LIFE, Issue 12 2009Axel Brennicke Abstract It took several independent observations of C-to-T differences between genomic mtDNA sequences and corresponding complementary DNA (cDNA) sequences before RNA editing in plant mitochondria was accepted as a fact by the group at Tübingen and later Berlin (Hiesel et al., Science246 (1989) 1632,1634). The first such deviating sequence runs were critically viewed in the lab as being errors of some kind, most likely cloning artifacts, which occur only too frequently. Several such cDNA-mtDNA differences identified in independent cDNA clones in different libraries and finally CGG to TGG codon changes dispelled the skeptical view, and this phenomenon was finally recognized as plant mitochondrial RNA editing of a type similar to the apolipoprotein B RNA editing in mammals. © 2009 IUBMB IUBMB Life, 61: 1105,1109, 2009. [source] Advances in powder diffraction pattern indexing: N-TREOR09JOURNAL OF APPLIED CRYSTALLOGRAPHY, Issue 5 2009Angela Altomare Powder pattern indexing can still be a challenge, despite the great recent advances in theoretical approaches, computer speed and experimental devices. More plausible unit cells, belonging to different crystal systems, are frequently found by the indexing programs, and recognition of the correct one may not be trivial. The task is, however, of extreme importance: in case of failure a lot of effort and computing time may be wasted. The classical figures of merit for estimating the unit-cell reliability {i.e.M20 [de Wolff (1968). J. Appl. Cryst.1, 108,113] and FN [Smith & Snyder (1979). J. Appl. Cryst.12, 60,65]} sometimes fail. For this reason, a new figure of merit has been introduced in N-TREOR09, the updated version of the indexing package N-TREOR [Altomare, Giacovazzo, Guagliardi, Moliterni, Rizzi & Werner (2000). J. Appl. Cryst. 33, 1180,1186], combining the information supplied by M20 with additional parameters such as the number of unindexed lines, the degree of overlap in the pattern (the so-called number of statistically independent observations), the symmetry deriving from the automatic evaluation of the extinction group, and the agreement between the calculated and observed profiles. The use of the new parameters requires a dramatic modification of the procedures used worldwide: in the approach presented here, extinction symbol and unit-cell determination are simultaneously estimated. N-TREOR09 benefits also from an improved indexing procedure in the triclinic system and has been integrated into EXPO2009, the updated version of EXPO2004 [Altomare, Caliandro, Camalli, Cuocci, Giacovazzo, Moliterni & Rizzi (2004). J. Appl. Cryst. 37, 1025,1028]. The application of the new procedure to a large set of test structures is described. [source] Diel variation in feeding rate and prey composition of herring and mackerel in the southern Gulf of St LawrenceJOURNAL OF FISH BIOLOGY, Issue 5 2003E. Darbyson Diel feeding patterns of herring Clupea harengus and mackerel Scomber scombrus in the southern Gulf of St Lawrence were examined based on samples obtained by midwater trawling between 19 and 26 June 2001. Within 3 h time periods, stomach contents tended to be more similar between fish from the same tow than between fish from different tows. Thus, in contrast to previous diet studies, which have used individual fish stomachs as independent observations, tow was used as the experimental unit in statistical analyses in this study. Diel patterns in stomach fullness were identified using generalized additive models. Two peaks in stomach fullness occurred for herring, one in the morning and the other in the evening. Mackerel showed an increase in feeding intensity throughout the day with a peak in mid-afternoon. The diel changes in stomach contents suggested rapid gastric evacuation rates for both species, especially for herring. The estimate of the instantaneous evacuation rate for herring was twice that for mackerel. Calanus copepods (mainly C. hyperboreus), fishes (mainly capelin Mallotus villosus) and euphausiids were the main prey found in the stomachs of both species. Calanus copepods dominated the diet of herring regardless of time period. They also dominated the diet of mackerel during the late afternoon, evening and night while fishes and euphausiids were dominant during the morning and early afternoon. These diel patterns emphasize the need for sampling throughout the day and night in order to estimate ration and diet composition for bioenergetic and ecosystem models. [source] On-line expectation,maximization algorithm for latent data modelsJOURNAL OF THE ROYAL STATISTICAL SOCIETY: SERIES B (STATISTICAL METHODOLOGY), Issue 3 2009Olivier Cappé Summary., We propose a generic on-line (also sometimes called adaptive or recursive) version of the expectation,maximization (EM) algorithm applicable to latent variable models of independent observations. Compared with the algorithm of Titterington, this approach is more directly connected to the usual EM algorithm and does not rely on integration with respect to the complete-data distribution. The resulting algorithm is usually simpler and is shown to achieve convergence to the stationary points of the Kullback,Leibler divergence between the marginal distribution of the observation and the model distribution at the optimal rate, i.e. that of the maximum likelihood estimator. In addition, the approach proposed is also suitable for conditional (or regression) models, as illustrated in the case of the mixture of linear regressions model. [source] Generalized additive models for location, scale and shapeJOURNAL OF THE ROYAL STATISTICAL SOCIETY: SERIES C (APPLIED STATISTICS), Issue 3 2005R. A. Rigby Summary., A general class of statistical models for a univariate response variable is presented which we call the generalized additive model for location, scale and shape (GAMLSS). The model assumes independent observations of the response variable y given the parameters, the explanatory variables and the values of the random effects. The distribution for the response variable in the GAMLSS can be selected from a very general family of distributions including highly skew or kurtotic continuous and discrete distributions. The systematic part of the model is expanded to allow modelling not only of the mean (or location) but also of the other parameters of the distribution of y, as parametric and/or additive nonparametric (smooth) functions of explanatory variables and/or random-effects terms. Maximum (penalized) likelihood estimation is used to fit the (non)parametric models. A Newton,Raphson or Fisher scoring algorithm is used to maximize the (penalized) likelihood. The additive terms in the model are fitted by using a backfitting algorithm. Censored data are easily incorporated into the framework. Five data sets from different fields of application are analysed to emphasize the generality of the GAMLSS class of models. [source] Predicting moisture dynamics of fine understory fuels in a moist tropical rainforest system: results of a pilot study undertaken to identify proxy variables useful for rating fire dangerNEW PHYTOLOGIST, Issue 3 2010David Ray Summary ,The use of fire as a land management tool in the moist tropics often has the unintended consequence of degrading adjacent forest, particularly during severe droughts. Reliable models of fire danger are needed to help mitigate these impacts. ,Here, we studied the moisture dynamics of fine understory fuels in the east-central Brazilian Amazon during the 2003 dry season. Drying stations established under varying amounts of canopy cover (leaf area index (LAI) = 0 , 5.3) were subjected to a range of water inputs (5,15 mm) and models were developed to forecast litter moisture content (LMC). Predictions were then compared with independent field data. ,A multiple linear regression relating litter moisture content to forest structure (LAI), ambient vapor pressure deficit (VPDM) and an index of elapsed time since a precipitation event (d,1) was identified as the best-fit model (adjusted R2 = 0.89). Relative to the independent observations, model predictions were relatively unbiased when the LMC was , 50%, but consistently underestimated the LMC when the observed values were higher. ,The approach to predicting fire danger based on forest structure and meteorological variables is promising; however, additional information to the LAI, for example forest biomass, may be required to accurately capture the influence of forest structure on understory microclimate. [source] Crystallization and preliminary X-ray analysis of pseudo-merohedrally twinned crystals of the full-length ,2 subunit of the Kv1 K+ channel from Rattus norvegicusACTA CRYSTALLOGRAPHICA SECTION D, Issue 5 2004Tatsuro Shimamura The eukaryotic Kv1 voltage-gated K+ channel is composed of four , subunits and four , subunits. The full-length ,2 subunit from Rattus norvegicus has been expressed in Esherichia coli, purified and then crystallized. A careful molecular-replacement study using the structure of the truncated ,2 subunit reveals that the crystals are perfectly pseudo-merohedrally twinned. While the apparent space group of the crystals was P4212, the real space group was shown to be P21212, with unit-cell parameters a = 222.6, b = 222.6, c = 82.3,Å. An asymmetric unit of the crystal contains two ,2 tetramers (MW = 340,kDa). A data set was collected from a crystal to 2.0,Å resolution, with 266,659 independent observations (93.0% complete) and Rmerge = 0.06. Although the crystals are perfectly twinned, they are still suitable for structural determination by molecular replacement using the truncated ,2 -subunit structure. [source] Purification and crystallization of the respiratory complex formate dehydrogenase-N from Escherichia coliACTA CRYSTALLOGRAPHICA SECTION D, Issue 1 2002Mika Jormakka A membrane-protein complex, formate dehydrogenase-N from Escherichia coli, has been purified and crystallized. This molybdenum-containing enzyme, composed of ,, , and , subunits, is the major electron donor to the nitrate respiratory chain of E. coli. The formate dehydrogenase-N crystals belong to the cubic space group P213, with unit-cell parameters a = b = c = 203,Å. An asymmetric unit of the crystals is assumed to contain one formate dehydrogenase-N monomer (MW 170,kDa). One data set to 1.6,Å resolution, with 342,711 independent observations (94.4% complete) and an Rmerge of 0.08, has been collected from a single crystal. This is the highest resolution data set reported for a membrane-protein complex to date. [source] Crystallization of the hydantoin transporter Mhp1 from Microbacterium liquefaciensACTA CRYSTALLOGRAPHICA SECTION F (ELECTRONIC), Issue 12 2008Tatsuro Shimamura The integral membrane protein Mhp1 from Microbacterium liquefaciens transports hydantoins and belongs to the nucleobase:cation symporter 1 family. Mhp1 was successfully purified and crystallized. Initial crystals were obtained using the hanging-drop vapour-diffusion method but diffracted poorly. Optimization of the crystallization conditions resulted in the generation of orthorhombic crystals (space group P212121, unit-cell parameters a = 79.7, b = 101.1, c = 113.8,Å). A complete data set has been collected from a single crystal to a resolution of 2.85,Å with 64,741 independent observations (94% complete) and an Rmerge of 0.12. Further experimental phasing methods are under way. [source] | |||||||||||||||||||