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Analysis Applications (analysis + application)

Distribution by Scientific Domains

Life Sciences	80%

Selected Abstracts

Technical note: Standardized and semiautomated Harris lines detection

AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 3 2008
S. Suter
Abstract Arrest in long bone growth and the subsequent resumption of growth may be visible as radiopaque transverse lines in radiographs (Harris lines, HL; Harris, HA. 1933. Bone growth in health and disease. London: Oxford University Press). The assessment of individual age at occurrence of such lines, as part of paleopathological skeletal studies, is time-consuming and shows large intra- and interobserver variability. Thus, a standardized, automated detection algorithm would help to increase the validity of such paleopathological research. We present an image analysis application facilitating automatic detection of HL. On the basis of established age calculation methods, the individual age-at-formation can be automatically assessed with the tool presented. Additional user input to confirm the automatic result is possible via an intuitive graphical user interface. Automated detection of HL from digital radiographs of a sample of late Medieval Swiss tibiae was compared to the consensus of manual assessment by two blinded expert observers. The intra- and interobserver variability was high. The quality of the observer result improved when standardized detection criteria were defined and applied. The newly developed algorithm detected two-thirds of the HL that were identified as consensus lines between the observers. It was, however, necessary to validate the last one-third by manual editing. The lack of a large test series must be noted. The application is freely available for further testing by any interested researcher. Am J Phys Anthropol, 2008. © 2008 Wiley-Liss, Inc. [source]

Electrokinetic instability effects in microchannels with and without nanofilm coatings

ELECTROPHORESIS, Issue 24 2008
Lung-Ming Fu
Abstract This paper presents a parametric experimental investigation into the electrokinetic instability (EKI) phenomenon within three different types of microfluidic device, namely T-type, cross-shaped, and cross-form with an expansion configuration. The critical electric field strength at which the EKI phenomenon is induced is examined as a function of the conductivity ratio, the microchannel width, the expansion ratio, and the surface treatment of the microchannel walls. It is found that the critical electric field strength associated with the onset of EKI is strongly dependent on the conductivity ratio of the two samples within the microfluidic device and reduces as the channel width increases. The surfaces of the microchannel walls are coated with hydrophilic or hydrophobic organic-based spin-on-glass (SOG) nanofilms for glass-based microchips. The experimental results indicate that no significant difference exists in the critical electric field strengths in the hydrophilic or hydrophobic SOG-coated microchannels, respectively. However, for a given conductivity ratio and microchannel width, the critical strength of the electric field is slightly lower in the SOG-coated microchannels than in the non-coated channels. In general, the results presented in this study demonstrate the potential for designing and controlling on-chip assays requiring the manipulation of samples with high conductivity gradients, and provide a useful general reference for avoiding EKI effects in capillary electrophoresis analysis applications. [source]

High-resolution DNA separation in microcapillary electrophoresis chips utilizing double-L injection techniques

ELECTROPHORESIS, Issue 21-22 2004
Lung-Ming Fu
Abstract An experimental and numerical investigation into the use of high-resolution injection techniques to separate DNA fragments within electrophoresis microchips is presented. The principal material transport mechanisms of electrokinetic migration, fluid flow, and diffusion are considered, and several variable-volume injection methods are discussed. A detailed analysis is provided of a double-L injection technique, which employs appropriate electrokinetic manipulations to reduce sample leakage within the microchip. The leakage effect in electroosmotic flow (EOF) is investigated using a sample composed of rhodamine B and Cy3 dye. Meanwhile, the effects of sample leakage in capillary electrophoresis (CE) separation are studied by considering the separation of 100-base pairs (bp) DNA ladders and HaeIII-digested ,X-174 DNA samples. The present experimental and simulation results indicate that the unique injection system employed in the current microfluidic chip has the ability to replicate the functions of both the conventional cross-channel and the shift-channel injection systems. Furthermore, applying the double-L injection method to these two injection systems is shown to reduce sample leakage significantly. The proposed microfluidic chip and double-L injection technique developed in this study have an exciting potential for use in high-resolution, high-throughput biochemical analysis applications and in many other applications throughout the micrototal analysis systems field. [source]

Spectral estimation on a sphere in geophysics and cosmology

GEOPHYSICAL JOURNAL INTERNATIONAL, Issue 3 2008
F. A. Dahlen
SUMMARY We address the problem of estimating the spherical-harmonic power spectrum of a statistically isotropic scalar signal from noise-contaminated data on a region of the unit sphere. Three different methods of spectral estimation are considered: (i) the spherical analogue of the one-dimensional (1-D) periodogram, (ii) the maximum-likelihood method and (iii) a spherical analogue of the 1-D multitaper method. The periodogram exhibits strong spectral leakage, especially for small regions of area A, 4,, and is generally unsuitable for spherical spectral analysis applications, just as it is in 1-D. The maximum-likelihood method is particularly useful in the case of nearly-whole-sphere coverage, A, 4,, and has been widely used in cosmology to estimate the spectrum of the cosmic microwave background radiation from spacecraft observations. The spherical multitaper method affords easy control over the fundamental trade-off between spectral resolution and variance, and is easily implemented regardless of the region size, requiring neither non-linear iteration nor large-scale matrix inversion. As a result, the method is ideally suited for most applications in geophysics, geodesy or planetary science, where the objective is to obtain a spatially localized estimate of the spectrum of a signal from noisy data within a pre-selected and typically small region. [source]

The mitochondrial genome of the Mediterranean fruit fly, Ceratitis capitata

INSECT MOLECULAR BIOLOGY, Issue 2 2000
L. Spanos
Abstract The complete sequence of the mitochondrial genome of Ceratitis capitata has been determined. The circular genome is 15 980 bp long and contains a standard gene complement, i.e. the large and small ribosomal RNA subunits, twenty-two transfer RNA (tRNA) genes and thirteen genes encoding mitochondrial proteins. When comparing the sequence to fragments previously sequenced from other isolates it becomes apparent that interstrain polymorphisms are not rare. These differences are potentially useful for the development of diagnostic tools for population analysis applications, such as determining the source of recent introductions. Moreover, they could help obtain a solution to the long-lasting controversy on the possible eradication of the Medfly from certain locations. [source]