High Genetic Diversity (high + genetic_diversity)

Distribution by Scientific Domains
Distribution within Life Sciences


Selected Abstracts


Relationship among five populations of Bactrocera dorsalis based on mitochondrial DNA sequences in western Yunnan, China

JOURNAL OF APPLIED ENTOMOLOGY, Issue 7 2008
P. Chen
Abstract Genetic variation in the Oriental fruit fly, Bactrocera dorsalis (Hendel), was analysed using five populations from western Yunnan, China, to elucidate the distribution and likely dispersal patterns of this fly. A 503-bp portion of the mitochondrial cytochrome oxidase gene was sequenced from a minimum of seven individuals from each of five fly populations; 25 haplotypes were observed among 57 individuals in these populations. High genetic diversity within populations was detected. Genetic distances between haplotypes reached 1.2%. Mantel tests did not indicate any isolation because of geographic distance. The Ruili (RL) population was significantly isolated from the others (pairwise Fst ranging from 0.10 to 0.21, and average genetic distances being higher than for all other four population comparisons). RL is geographically separated from the other sites by the Gaoligong Mountains. The Liuku (LK) population had a close genetic relationship with the Lujiangba (LJB) population, suggesting that the LK population probably originated from LJB that is located in the same valley to the south. The Baoshan (BS) and Dali (DL) populations were also geographically isolated from the others, not originating from LJB and RL, where the fly is present year-round. The north-south orientation of mountains and valleys in western Yunnan appears to prevent latitudinal gene exchange by dispersing flies and thus divides the five populations into four relatively independent zones, namely BS, DL, LK-LJB and RL. In addition, air currents that generally flow south to north appear to assist dispersing flies, especially in valleys between the mountain chains. [source]


Intraspecific structure within three caviar-producing sturgeons (Acipenser gueldenstaedtii, A. stellatus, and Huso huso) based on mitochondrial DNA analysis

JOURNAL OF APPLIED ICHTHYOLOGY, Issue 6 2005
P. Doukakis
Summary A survey of three mitochondrial DNA regions (control region, NADH5, cytochrome b) and comprehensive sequencing of the control region (631,646 bps) was conducted to examine whether subspecies and geographic populations within three species of Eurasian sturgeons, Acipenser gueldenstaedtii, A. stellatus, and Huso huso, are genetically distinct. Neither subspecies nor populations exhibited diagnostic distinction or reciprocal monophyly in any gene region examined. For the control region, molecular variance analyses (amova) indicate that most of the variance is because of differences among haplotypes within subspecies (H. huso: 99.6%; A. stellatus: 95.0%; A. gueldenstaedtii: 81.0%) and populations (A. gueldenstaedtii: 76.1%). Significant pairwise F -values were found for all pairwise comparisons except for Sea of Azov and Caspian Sea A. gueldenstaedtii and Caspian Sea and Black Sea A. stellatus and H. huso. Only weak genetic differentiation is apparent between select subspecies and populations, reflective of biogeographic and management history. High genetic diversity within A. gueldenstaedtii suggests the possibility of additional population structure. Future research and management projects should consider these results. [source]


Inferring colonization history and dispersal patterns of a long-lived seabird by combining genetic and empirical data

JOURNAL OF ZOOLOGY, Issue 4 2010
L. C. Young
Abstract Identifying biological trends and threats to organisms that make long distance migrations are often the limiting factors in their conservation. Indeed, Laysan albatross Phoebastria immutabilis are highly vagile seabirds, foraging throughout the North Pacific Ocean. Despite mark,recapture data indicating natal philopatry, Laysan albatross recently re-colonized several anthropogenically extirpated breeding locations. At the same time, a breeding population in the north-western Hawaiian Islands was lost to erosion and it was hypothesized that the colonization events were due to displacement rather than dispersal. Nuclear and mitochondrial markers were used in a range wide survey to test whether natal philopatry corresponded to population structure in Laysan albatross, and to determine whether recent colonization events were a result of displacement from vanishing breeding habitat. Five microsatellite loci found little population structure (FST=0.01, P=0.001), and sequences from the mitochondrial control region revealed low population structure (,ST=0.05, P<0.001). The results were consistent with male-mediated dispersal and strong, but not absolute, philopatry by females. Mixed stock analyses and banding records from the newly colonized sites indicated contributions from multiple source populations, which contradicted the displacement hypothesis of a single source population and instead supported species-wide dispersal from all source colonies. High genetic diversity (,=0.045, h=0.989), rapid colonization, and great dispersal potential bode well for the conservation of Laysan albatross. However, it may be necessary to protect high-island nesting sites, preserve genetic diversity and maintain breeding populations in the face of projected sea level rises and persistent bycatch. [source]


Hyperinvasive genotypes of Neisseria meningitidis in France

CLINICAL MICROBIOLOGY AND INFECTION, Issue 5 2008
M. L. Zarantonelli
Abstract Clinical isolates of Neisseria meningitidis from cases of meningococcal disease, collected between January 2000 and December 2004, were identified and typed at the French National Reference Centre. A representative subset of 546 isolates from among 2882 isolates was further genotyped by multilocus sequence typing to determine their genetic lineages (clonal complexes) and the degree of diversification among different clonal complexes. Representative isolates of the main clonal complexes were tested for their virulence in mice and for proapoptotic effects on human epithelial cells. High genetic diversity in some genetic lineages (ST-32 and ST-41/44) was correlated with heterogeneity in virulence in mice and proapoptotic effects on human epithelial cells. In contrast, the homogeneous genetic structure of isolates of the ST-11 clonal complex, regardless of their serogroup, correlated positively with a fatal outcome of the infection, increased virulence in mice and increased proapoptotic effects on human epithelial cells. [source]


A set of highly discriminating microsatellite loci for the Galápagos marine iguana Amblyrhynchus cristatus

MOLECULAR ECOLOGY RESOURCES, Issue 3 2006
SEBASTIAN STEINFARTZ
Abstract We describe here the cloning of 12 (7 dinucleotide, 1 trinucleotide and 4 tetranucleotide) microsatellite loci for the Galápagos marine iguana Amblyrhynchus cristatus. When tested for individuals from five different island populations on the Galápagos archipelago, high genetic diversities (9,20 alleles per locus) and heterozygosities (0.200,0.944) were observed. All loci showed no obvious deviations from Hardy,Weinberg equilibrium. The new set of microsatellite loci was able to assign individuals reliably to their island of origin, thus being able to discriminate between residents and migrants between islands. [source]


MINIMAL SELFING, FEW CLONES, AND NO AMONG-HOST GENETIC STRUCTURE IN A HERMAPHRODITIC PARASITE WITH ASEXUAL LARVAL PROPAGATION

EVOLUTION, Issue 3 2006
Charles D. Criscione
Abstract Little is known about actual mating systems in natural populations of parasites or about what constitutes the limits of a parasite deme. These parameters are interesting because they affect levels of genetic diversity, opportunities for local adaptation, and other evolutionary processes. We expect that transmission dynamics and the distribution of parasites among hosts should have a large effect on mating systems and demic structure, but currently we have mostly speculation and very few data. For example, infrapopulations (all the parasites in a single host) should behave as demes if parasite offspring are transmitted as a clump from host to host over several generations. However, if offspring are well mixed, then the parasite component population (all the parasites among a host population) would function as the deme. Similarly, low mean intensities or a high proportion of worms in single infections should increase the selfing rate. For species having an asexual amplification stage, transmission between intermediate and definitive (final) hosts will control the variance in clonal reproductive success, which in turn could have a large influence on effective sizes and rates of inbreeding. We examined demic structure, selfing rates, and the variance in clonal reproductive success in natural populations of Plagioporus shawi, a hermaphroditic trematode that parasitizes salmon. Overall levels of genetic diversity were very high. An a posteriori inference of population structure overwhelmingly supports the component population as the deme, rather than individual infrapopulations. Only a single pair of 597 adult individuals was identified as clones. Thus, the variance in clonal reproductive success was almost zero. Despite being hermaphroditic, P. shawi appears to be almost entirely outcrossing. Genetic estimates of selfing (<5%) were in accordance with the proportion of parasites from single infections. Thus, it appears that individual flukes outcross whenever possible and only resort to selfing when alone. Finally, our data support the hypothesis that aquatic transmission and the use of several intermediate hosts promotes high genetic diversity and well-mixed infrapopulations. [source]


Genetic diversity and biogeography of haloalkaliphilic sulphur-oxidizing bacteria belonging to the genus Thioalkalivibrio

FEMS MICROBIOLOGY ECOLOGY, Issue 1 2006
Mirjam Foti
Abstract A group of 85 isolates of haloalkaliphilic obligately chemolithoautotrophic sulphur-oxidizing bacteria belonging to the genus Thioalkalivibrio were recently obtained from soda lakes in Mongolia, Kenya, California, Egypt and Siberia. They have been analyzed by repetitive extragenic palindromic (rep)-PCR genomic fingerprinting technique with BOX- and (GTG)5-primer set. Cluster analysis was performed using combined fingerprint profiles and a dendrogram similarity value (r) of 0.8 was used to define the same genotype. Fifty-six genotypes were found among the isolates, revealing a high genetic diversity. The strains can be divided into two major clusters, including isolates from the Asiatic (Siberia and Mongolia) and the African (Kenya and Egypt) continents, respectively. The majority (85.9%) of the genotypes were found in only one area, suggesting an endemic character of the Thioalkalivibrio strains. Furthermore, a correlation between fingerprint clustering, geographic origin and the characteristics of the lake of origin was found. [source]


N2 -fixation and complementary chromatic adaptation in non-heterocystous cyanobacteria from Lake Constance

FEMS MICROBIOLOGY ECOLOGY, Issue 2 2001
Christine Postius
Abstract Non-heterocystous, mostly filamentous cyanobacteria were isolated from the crust of stones, from the periphyton of two macrophytes from the littoral zone and from the pelagic environment of Lake Constance. All isolates were cultivated as unialgal strains. DNA analysis by restriction fragment length polymorphism with the psbA gene probe revealed high genetic diversity among the strains from the littoral zone. For all genotypes, the occurrence of the nifH gene encoding a nitrogenase subunit and of genes encoding subunits of phycoerythrin and phycocyanin were tested by Southern blot hybridization. In addition, the isolates were investigated for their ability for complementary chromatic adaptation (CCA) and for anaerobic N2 -fixation. With respect to these characteristics, all cyanobacteria included in this study were assigned to four different types: (1) strains without the capability to fix N2 or to perform CCA of the group III type (CCA III); (2) strains which show both features; (3) strains with the ability to fix nitrogen, but that do not show any CCA III; and (4) strains that produce phycoerythrin, but without the capacity for CCA III or N2 -fixation. By examining the frequency distribution of isolates, these types were shown to prefer different habitats. While cyanobacterial strains capable of N2 -fixation, but without CCA III, were mainly obtained from stone crusts in the supralittoral zone, those with the potential for N2 -fixation as well as for CCA III were largely isolated from submersed macrophytes. Cyanobacteria that produce phycoerythrin, but do not perform CCA III or N2 -fixation, were found in the pelagic zone only. [source]


Molecular epidemiology of clinical and environmental isolates of the Cryptococcus neoformans species complex reveals a high genetic diversity and the presence of the molecular type VGII mating type a in Colombia

FEMS YEAST RESEARCH, Issue 4 2006
Patricia Escandón
Abstract The aim of this study was to investigate the epidemiological relationships of clinical and environmental isolates of the Cryptococcus neoformans species complex in Colombia. The current study reflects data from 1987 to 2004. In Colombia serotypes A and B are most frequently recovered from patients and the environment. Of the 178 clinical isolates studied, 91.1% were of serotype A, 8.4% serotype B and 0.5% serotype C. Of the 247 environmental isolates, 44.2% were of serotype A, 42.6% serotype B and 13.2% serotype C. No serotype D isolates were isolated. Serotype AD has not been recovered in Colombia. PCR fingerprinting with the primers M13, (GACA)4 and (GTG)5 and URA5 gene restriction fragment length polymorphism analysis grouped the majority of clinical serotype A and environmental serotype B isolates into the molecular types VNI (98.1%) and VGII (100%), respectively. Mating type , was determined in 99.3% of serotype A isolates, but 96.6% of serotype B isolates were of mating type a. Similar profiles between clinical and environmental isolates suggest that the patients may have acquired the infection from the environment. The data presented form part of the Colombian contribution to the ongoing global survey of the C. neoformans species complex. [source]


Genetic diversity in Nordic and Baltic populations of Chondrostereum purpureum: a potential herbicide biocontrol agent

FOREST PATHOLOGY, Issue 6 2008
H. Vartiamäki
Summary We analysed genetic variation in the natural populations of a potential herbicide biocontrol agent, Chondrostereum purpureum, in Nordic and Baltic countries using random amplified microsatellite markers. The results showed high genetic diversity among the populations of this fungus, but almost a complete lack of local differentiation. The results implicate that any local strain from the area can be used as a biocontrol agent without a fear of introducing new genotypes to treatment areas. [source]


Assessing yield and yield stability of remnant populations of Cenchrus ciliaris L. in arid Tunisia: developing a blueprint for initiating native seed production

GRASS & FORAGE SCIENCE, Issue 3 2008
M. Visser
Abstract Native seed needs to be sourced locally yet contain ample genetic variation. A blueprint is developed for assembling and assessing native plant material at one eco-geographical site prior to seed multiplication for restoring degraded drylands of North Africa. To satisfy the ,local yet ample' criterion, the feasibility of selecting a limited number of high-yielding genotypes within one starter collection of Cenchrus ciliaris L. in Presaharian Tunisia (100,200 mm annual rainfall) was tested and compared to outcomes with similar work on its ecological complement, Stipa lagascae R. & Sch. Results showed that a limited number of high-yielding genotypes can easily produce quality native seed because of the high genetic diversity of the starter material. Results also showed that there was a high potential to increase the rain-use efficiency of degraded drylands using this seed. Seven ground rules are suggested when building the starter collection: (i) carefully delimit the region for sourcing seed; (ii) work with individual plants; (iii) carefully choose the collection site; (iv) replicate plant material as much as is feasible; (v) match evaluation methods to resource constraints; (vi) wait for conditions of maximum resource availability before culling; and (vii) apply a two-tiered selection strategy. [source]


Surviving climate changes: high genetic diversity and transoceanic gene flow in two arctic,alpine lichens, Flavocetraria cucullata and F. nivalis (Parmeliaceae, Ascomycota)

JOURNAL OF BIOGEOGRAPHY, Issue 8 2010
József Geml
Abstract Aim, We examined genetic structure and long-distance gene flow in two lichenized ascomycetes, Flavocetraria cucullata and Flavocetraria nivalis, which are widespread in arctic and alpine tundra. Location, Circumpolar North. Methods, DNA sequences were obtained for 90 specimens (49 for F. cucullata and 41 for F. nivalis) collected from various locations in Europe, Asia and North America. Sequences of the nuclear internal transcribed spacer (ITS) + 5.8S ribosomal subunit gene region were generated for 89 samples, and supplemented by beta-tubulin (BTUB) and translation elongation factor 1-alpha gene (EF1) sequences for a subset of F. cucullata specimens. Phylogenetic, nonparametric permutation methods and coalescent analyses were used to assess population divergence and to estimate the extent and direction of migration among continents. Results, Both F. cucullata and F. nivalis were monophyletic, supporting their morphology-based delimitation, and had high and moderately high intraspecific genetic diversity, respectively. Clades within each species contained specimens from both North America and Eurasia. We found only weak genetic differentiation among North American and Eurasian populations, and evidence for moderate to high transoceanic gene flow. Main conclusions, Our results suggest that both F. cucullata and F. nivalis have been able to migrate over large distances in response to climatic fluctuations. The high genetic diversity observed in the Arctic indicates long-term survival at high latitudes, whereas the estimated migration rates and weak geographic population structure suggest a continuing long-distance gene flow between continents that has prevented pronounced genetic differentiation. The mode of long-distance dispersal is unknown, but wind dispersal of conidia and/or ascospores is probably important in the open arctic landscapes. The high genetic diversity and efficient long-distance dispersal capability of F. cucullata and F. nivalis suggest that these species, and perhaps other arctic lichens as well, will be able to track their potential niche in the changing Arctic. [source]


Putative glacial refugia of Cedrus atlantica deduced from Quaternary pollen records and modern genetic diversity

JOURNAL OF BIOGEOGRAPHY, Issue 7 2009
R. Cheddadi
Abstract Aim, To investigate the impact of past environmental changes on Cedrus atlantica and its current genetic diversity, and to predict its future distribution. Location, Morocco, Algeria and Tunisia. Methods, Eleven fossil pollen records from these three countries were used to locate putative glacial refugia and to reconstruct past climate changes. A mechanistic vegetation distribution model was used to simulate the distribution of C. atlantica in the year 2100. In addition, a genetic survey was carried out on modern Moroccan C. atlantica. Results, Pollen records indicate that Cedrus was present during the last glacial period, probably in scattered refugia, in Tunisia, Algeria and Morocco. In the Tunisian and Algerian sites, cedar expanded during the late glacial and the early Holocene, then disappeared after c. 8000 yr bp. Reconstructed mean annual precipitation and January temperature show that the last glacial period in Morocco was cooler by 10,15°C and drier by c. 300,400 mm year,1 than the climate today. Modern chloroplast microsatellites of 15 C. atlantica populations in Morocco confirm the presence of multiple refugia and indicate that cedar recolonized the Moroccan mountains fairly recently. Model simulation indicates that by the year 2100 the potential distribution of C. atlantica will be much restricted with a potential survival area located in the High Atlas. Main conclusions, Environmental changes in northern Africa since the last glacial period have had an impact on the geographical distribution of C. atlantica and on its modern genetic diversity. It is possible that by the end of this century C. atlantica may be unable to survive in its present-day locations. To preserve the species, we suggest that seedlings from modern C. atlantica populations located in the High Atlas mountains, where a high genetic diversity is found, be transplanted into the western High Atlas. [source]


Inferring long-distance dispersal and topographic barriers during post-glacial colonization from the genetic structure of red maple (Acer rubrum L.) in New England

JOURNAL OF BIOGEOGRAPHY, Issue 9 2008
Paul F. Gugger
Abstract Aim, This study aims to assess the role of long-distance seed dispersal and topographic barriers in the post-glacial colonization of red maple (Acer rubrum L.) using chloroplast DNA (cpDNA) variation, and to understand whether this explains the relatively higher northern diversity found in eastern North American tree species compared with that in Europe. Location, North-eastern United States. Methods, The distribution of intraspecific cpDNA variation in temperate tree populations has been used to identify aspects of post-glacial population spread, including topographic barriers to population expansion and spread by long-distance seed dispersal. We sequenced c. 370 cpDNA base pairs from 221 individuals in 100 populations throughout the north-eastern United States, and analysed spatial patterns of diversity and differentiation. Results, Red maple has high genetic diversity near its northern range limit, but this diversity is not partitioned by topographic barriers, suggesting that the northern Appalachian Mountains were not a barrier to the colonization of red maple. We also found no evidence of the patchy genetic structure that has been associated with spread by rare long-distance seed dispersal in previous studies. Main conclusions, Constraints on post-glacial colonization in eastern North America seem to have been less stringent than those in northern Europe, where bottlenecks arising from long-distance colonization and topographic barriers appear to have strongly reduced genetic diversity. In eastern North America, high northern genetic diversity may have been maintained by a combination of frequent long-distance dispersal, minor topographic obstacles and diffuse northern refugia near the ice sheet. [source]


Genetic variation in flowering phenology and avoidance of seed predation in native populations of Ulex europaeus

JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 2 2010
A. ATLAN
Abstract The genetic variation in flowering phenology may be an important component of a species' capacity to colonize new environments. In native populations of the invasive species Ulex europaeus, flowering phenology has been shown to be bimodal and related to seed predation. The aim of the present study was to determine if this bimodality has a genetic basis, and to investigate whether the polymorphism in flowering phenology is genetically linked to seed predation, pod production and growth patterns. We set up an experiment raising maternal families in a common garden. Based on mixed analyses of variance and correlations among maternal family means, we found genetic differences between the two main flowering types and confirmed that they reduced seed predation in two different ways: escape in time or predator satiation. We suggest that this polymorphism in strategy may facilitate maintain high genetic diversity for flowering phenology and related life-history traits in native populations of this species, hence providing high evolutionary potential for these traits in invaded areas. [source]


Diversity and food quality properties of farmers' varieties of sorghum from Bénin

JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 7 2006
AP Polycarpe Kayodé
Abstract Farmers' varieties of sorghum from three communities in different regions of northern Bénin were analysed for their food quality and agro-morphological properties, and also for their genetic diversity using amplified fragment length polymorphism (AFLP). Farmers' varieties of sorghum differed greatly with respect to their morphology and agronomic and food traits. Most of the varieties had long (>200 cm) stems (87%), loose panicles (79%) and a red or pink colour (52%). Most were susceptible to drought (54%) and to attacks by striga (79%), insects (99%) and birds (77%). Farmers evaluated the quality of the seeds for preparing porridges as being high for 60% of the varieties and 26% of the varieties were regarded as suitable for making beverages. Late-maturing, large-seeded, red or pink varieties are preferred by farmers for porridges and beverages. Gene diversity among varieties within regions, as measured by neutral markers, was similar for the three regions (0.211,0.240). However, across regions the short (<150 cm) stem varieties showed relatively high genetic diversity compared with long or medium stem varieties (0.378 vs 0.184,0.216 for long,medium stem varieties). Genetic differentiation (Fst) among regions and among stem lengths of varieties was significant and ranged between 0.086 and 0.135. Grain colour, stem length and panicle shape varied significantly with the region/stem length and correlated with the genetic differentiation of regions. No relationship could be detected between the genetic differentiation of the varieties and their food quality as expressed by the farmers. Implications of the findings for crop conservation and breeding are discussed. Copyright © 2006 Society of Chemical Industry [source]


Contrasting mtDNA diversity and population structure in a direct-developing marine gastropod and its trematode parasites

MOLECULAR ECOLOGY, Issue 22 2009
DEVON B. KEENEY
Abstract The comparative genetic structure of hosts and their parasites has important implications for their coevolution, but has been investigated in relatively few systems. In this study, we analysed the genetic structure and diversity of the New Zealand intertidal snail Zeacumantus subcarinatus (n = 330) and two of its trematode parasites, Maritrema novaezealandensis (n = 269) and Philophthalmus sp. (n = 246), using cytochrome c oxidase subunit I gene (COI) sequences. Snails and trematodes were examined from 11 collection sites representing three regions on the South Island of New Zealand. Zeacumantus subcarinatus displayed low genetic diversity per geographic locality, strong genetic structure following an isolation by distance pattern, and low migration rates at the scale of the study. In contrast, M. novaezealandensis possessed high genetic diversity, genetic homogeneity among collection sites and high migration rates. Genetic diversity and migration rates were typically lower for Philophthalmus sp. compared to M. novaezealandensis and it displayed weak to moderate genetic structure. The observed patterns likely result from the limited dispersal ability of the direct developing snail and the utilization of bird definitive hosts by the trematodes. In addition, snails may occasionally experience long-distance dispersal. Discrepancies between trematode species may result from differences in their effective population sizes and/or life history traits. [source]


Pronounced genetic diversity in tropical epiphyllous lichen fungi

MOLECULAR ECOLOGY, Issue 10 2009
ELISABETH BALOCH
Abstract Lowland tropical habitats harbour an unexplored genetic diversity of epiphyllous fungi. In the shade of rainforest understoreys, lichenized fungi are specialized to an ephemeral habitat where they produce little vegetative biomass and develop reproductive structures early. In a first population genetic study of epiphyllous lichen fungi, we analysed the intraspecific genetic diversity of five leaf-colonizing lichen mycobiont species. Sampling focused on a lowland perhumid forest plot in Costa Rica, with additional collections from other localities throughout the country. In all species we detected sympatric occurrence of highly diverged haplotypes. Haplotypes belonging to distinct clades in networks were also found on the same leaf, clearly indicating multiple independent colonization events on single leaves. Despite the unusually high genetic diversity of these leaf-colonizing tropical fungi, we did not detect pronounced spatial structure of the haplotype distribution between geographical regions. The observed patterns suggest that the diversity of foliicolous lichens could be much higher than expected, with several cryptic genetic lineages within each morphologically characterized species. [source]


Discovery of a large clonal patch of a social amoeba: implications for social evolution

MOLECULAR ECOLOGY, Issue 6 2009
OWEN M GILBERT
Abstract Studies of genetic population structures of clonally reproducing macro-organisms have revealed large areas where only one clone is found. These areas, referred to as clonal patches, have not been shown to occur in free-living microbes until now. In free-living microbes, high genetic diversity at local scales is usually maintained by high rates of dispersal. We report, however, a highly dense, 12-m clonal patch of the social amoeba Dictyostelium discoideum in a cattle pasture located in a Texas Gulf Coast prairie. We confirm the presence of only one clone by the analysis of 65 samples and amplification of 10 polymorphic microsatellite loci. Samplings of additional cattle pastures nearby showed higher clonal diversity, but with a density of D. discoideum isolates lower than in the clonal patch. These findings show that high rates of microbial dispersal do not always produce genetic diversity at local scales, contrary to the findings of previous studies. The existence of clonal patches may be particularly important for microbial social evolution. [source]


Invasion genetics of the Eurasian round goby in North America: tracing sources and spread patterns

MOLECULAR ECOLOGY, Issue 1 2009
JOSHUA E. BROWN
Abstract The Eurasian round goby Neogobius melanostomus (Apollonia melanostoma) invaded the North American Great Lakes in 1990 through ballast water, spread rapidly, and now is widely distributed and moving through adjacent tributaries. We analyse its genetic diversity and divergence patterns among 25 North American (N = 744) and 22 Eurasian (N = 414) locations using mitochondrial DNA cytochrome b gene sequences and seven nuclear microsatellite loci in order to: (i) identify the invasion's founding source(s), (ii) test for founder effects, (iii) evaluate whether the invasive range is genetically heterogeneous, and (iv) determine whether fringe and central areas differ in genetic diversity. Tests include FST analogues, neighbour-joining trees, haplotype networks, Bayesian assignment, Monmonier barrier analysis, and three-dimensional factorial correspondence analysis. We recovered 13 cytochrome b haplotypes and 232 microsatellite alleles in North America and compared these to variation we previously described across Eurasia. Results show: (i) the southern Dnieper River population was the primary Eurasian donor source for the round goby's invasion of North America, likely supplemented by some alleles from the Dniester and Southern Bug rivers, (ii) the overall invasion has high genetic diversity and experienced no founder effect, (iii) there is significant genetic structuring across North America, and (iv) some expansion areas show reduced numbers of alleles, whereas others appear to reflect secondary colonization. Sampling sites in Lake Huron's Saginaw Bay and Lake Ontario significantly differ from all others, having unique alleles that apparently originated from separate introductions. Substantial genetic variation, multiple founding sources, large number of propagules, and population structure thus likely aided the goby's ecological success. [source]


Testing the role of genetic factors across multiple independent invasions of the shrub Scotch broom (Cytisus scoparius)

MOLECULAR ECOLOGY, Issue 22 2007
MING KANG
Abstract Knowledge of the introduction history of invasive plants informs on theories of invasiveness and assists in the invasives management. For the highly successful invasive shrub Scotch broom, Cytisus scoparius, we analysed a combination of nuclear and chloroplast microsatellites for eight native source regions and eight independent invasion events in four countries across three continents. We found that two exotic Australian populations came from different sources, one of which was derived from multiple native populations, as was an invasive sample from California. An invasive population from New Zealand appeared to be predominantly sourced from a single population, either from the native or exotic ranges. Four invasive populations from Chile were genetically differentiated from the native range samples analysed here and so their source of introduction could not be confirmed, but high levels of differentiation between the Chilean populations suggested a combination of different sources. This extensive global data set of replicated introductions also enabled tests of key theories of invasiveness in relation to genetic diversity. We conclude that invasive populations have similar levels of high genetic diversity to native ranges; levels of admixture may vary across invasive populations so admixture does not appear to have been an essential requirement for invasion; invasive and native populations exhibit similar level of genetic structure indicating similar gene flow dynamics for both types of populations. High levels of diversity and multiple source populations for invasive populations observed here discount founder effects or drift as likely explanations for previously observed seed size differences between ranges. The high levels of genetic diversity, differential and source admixture identified for most exotic populations are likely to limit the ability to source biocontrol agents from the native region of origin of invasive populations. [source]


Multiple introductions promote range expansion of the mollusc Cyclope neritea (Nassariidae) in France: evidence from mitochondrial sequence data

MOLECULAR ECOLOGY, Issue 6 2006
B. SIMON-BOUHET
Abstract Since the 1970s, the nassariid gastropod Cyclope neritea has been extending its range north along the French Atlantic coasts from the Iberian Peninsula. This may be due to natural spread because of the recent warming of the northeastern Atlantic. However, human-mediated introductions related to shellfish culture may also be a probable explanation for this sudden range expansion. To examine these two hypotheses, we carried out a comprehensive study based on mitochondrial gene sequences (cytochrome oxidase I) of the five recently colonized French bays as well as 14 populations located in the recognized native range of the species. From a total of 594 individuals, we observed 29 haplotypes to split into three divergent clades. In the native range, we observed a low molecular diversity, strong genetic structure and agreement between geography and gene genealogies. Along the French coasts, we observed the opposite: high genetic diversity and low genetic structure. Our results show that recurrent human-mediated introductions from several geographical areas in the native range may be a source for the French Atlantic populations. However, despite the low dispersal ability of C. neritea, the isolation-by-distance pattern in France suggested that this gastropod may have been present (although unnoticed) on the French Atlantic coasts before the 1970s. As C. neritea shows characteristics of a cryptogenic species, the classification of Atlantic populations as either native or introduced is not straightforward. Cryptogenic species should be studied further to determine the status of new populations close to their recognized native range. [source]


Low gene flow but high genetic diversity in the threatened Mallorcan midwife toad Alytes muletensis

MOLECULAR ECOLOGY, Issue 11 2005
F. J. L. KRAAIJEVELD-SMIT
Abstract We investigated fine-scale genetic structuring in the rare and vulnerable Mallorcan midwife toad Alytes muletensis using eight polymorphic microsatellite markers. The current range of this amphibian is restricted to some 19 sites of which six are derived from reintroductions, all located in the mountain ranges of Mallorca. We sampled tadpoles from 14 pools covering 10 natural sites and two reintroduction sites for microsatellite DNA analyses. Relatively high levels of genetic variation were found in most pools (HE = 0.38,0.71, allelic richness = 2.6,6.2). Only at one pool has the population recently gone through a bottleneck. Dispersal between pools in different torrents does not occur whereas downstream dispersal between pools within the same torrent does happen at low frequencies. This occasional exchange of individuals does not lead to neighbouring pools in the same torrent being panmictic. This can be concluded because all FST values (0.12,0.53) differ significantly from zero and structure analyses identified neighbouring pools as separate populations. Furthermore, assignment and migration tests showed little exchange between neighbouring pools. If upstream locations or complete torrents go extinct, they are unlikely to be recolonized naturally. For conservation purposes, reintroductions of tadpoles to sites where local extinctions have occurred may therefore be advisable. [source]


Unrelated queens coexist in colonies of the termite Macrotermes michaelseni

MOLECULAR ECOLOGY, Issue 5 2005
M. HACKER
Abstract Relatedness increases the likelihood of cooperation within colonies of social insects. Polygyny, the coexistence of numerous reproductive females (queens) in a colony, is common in mature colonies of the termite Macrotermes michaelseni. In this species, polygyny results from pleometrosis and from several female alates that jointly found a new colony. To explain this phenomenon, it was suggested that only related females cooperate and survive during maturation of colonies. Using multilocus fingerprints as well as microsatellites, we showed that nestmate queens in mature colonies are unrelated. Furthermore, we found that all nestmate queens contributed to the production of steriles. Even in mature colonies, several matrilines of steriles coexist within a colony. Although genetic diversity within colonies may increase the likelihood of conflicts, high genetic diversity may be important for foraging, colony growth, and resistance to disease and parasites. [source]


Microsatellite DNA markers for a grasshopper: Prionotropis hystrix rhodanica (Orthoptera, Pamphagidae)

MOLECULAR ECOLOGY RESOURCES, Issue 3 2002
R. Streiff
Abstract Microsatellite loci were isolated from Prionotropis hystrix rhodanica, an endangered grasshopper species, endemic to a steppic area southeast of France. Six polymorphic loci were obtained from an enriched partial genomic libray. A high genetic diversity was observed at all loci, with an observed number of alleles ranging from seven to 29, and an observed heterozygosity between 0.71 and 0.90. Test of cross-amplifications on two closely related taxa are presented. [source]


Genetic diversity contribution to errors in short oligonucleotide microarray analysis

PLANT BIOTECHNOLOGY JOURNAL, Issue 5 2006
Matias Kirst
Summary DNA arrays based on short oligonucleotide (, 25-mer) probes are being developed for many species, and are being applied to quantify transcript abundance variation in species with high genetic diversity. To define the parameters necessary to design short oligo arrays for maize (Zea mays L.), a species with particularly high nucleotide (single nucleotide polymorphism, SNP) and insertion-deletion (indel) polymorphism frequencies, we analysed gene expression estimates generated for four maize inbred lines using a custom Affymetrix DNA array, and identified biases associated with high levels of polymorphism between lines. Statistically significant interactions between probes and maize inbreds were detected, affecting five or more probes (out of 30 probes per transcript) in the majority of cases. SNPs and indels were identified by re-sequencing; they are the primary source of probe-by-line interactions, affecting probeset level estimates and reducing the power of detecting transcript level variation between maize inbreds. This analysis identified 36 196 probes in 5118 probesets containing markers that may be used for genotyping in natural and segregating populations for association gene analysis and genetic mapping. [source]


Absence of population substructuring in Zimbabwe chicken ecotypes inferred using microsatellite analysis

ANIMAL GENETICS, Issue 4 2007
F. C. Muchadeyi
Summary The objective of this study was to investigate the population structure of village chickens found in the five agro-ecological zones of Zimbabwe. Twenty-nine microsatellites were genotyped for chickens randomly selected from 13 populations, including the five eco-zones of Zimbabwe (n = 238), Malawi (n = 60), Sudan (n = 48) and six purebred lines (n = 180). A total of 280 alleles were observed in the 13 populations. Forty-eight of these alleles were unique to the Zimbabwe chicken ecotypes. The average number (±SD) of alleles/locus was 9.7 ± 5.10. The overall heterozygote deficiency in the Zimbabwe chickens (FIT ± SE) was 0.08 ± 0.01, over 90% of which was due to within-ecotype deficit (FIS). Small Nei's standard genetic distances ranging from 0.02 to 0.05 were observed between Zimbabwe ecotypes compared with an average of 0.6 between purebred lines. The structure software program was used to cluster individuals to 2 , K , 7 assumed clusters. The most probable clustering was found at K = 6. Ninety-seven of 100 structure runs were identical, in which Malawi, Sudan and purebred lines split out as independent clusters and the five Zimbabwe ecotypes clustered into one population. The within-ecotype marker-estimated kinships (mean = 0.13) differed only slightly from the between-ecotype estimates. Results from this study lead to a rejection of the hypothesis that village chickens are substructured across agro-ecological zones but indicated high genetic diversity within the Zimbabwe chicken population. [source]


Genetic diversity of Forest and Savannah chicken populations of Ghana as estimated by microsatellite markers

ANIMAL SCIENCE JOURNAL, Issue 3 2010
Richard OSEI-AMPONSAH
ABSTRACT The characterization of indigenous animal genetic resources is a requisite step in providing needed information for the conservation of useful genotypes against future needs. Thus, in this study, 22 microsatellite markers were used to genotype 114 local chickens from the Forest (n = 59) and Savannah (n = 55) eco-zones of Ghana and the results compared to those of the ancestral red junglefowl (n = 15) and two European commercial chicken populations , a broiler (n = 25) and white leghorn (n = 25). A total of 171 alleles were observed, with an average of 7.8 alleles per locus. The local Ghanaian chickens showed higher diversity in terms of the observed number of alleles per locus (6.6) and observed heterozygosity (0.568) compared with the combined control populations (6.0 and 0.458, respectively). However, Wright's F -statistics revealed negligible genetic differentiation (FST) in local Ghanaian chicken populations. In addition, 65% of the Savannah chickens were inferred to be more likely from the Forest, suggesting a south-north dispersal of chickens from their probable original location in the Forest zone to the Savannah areas. It is concluded that the Forest and Savannah chickens of Ghana are a single, randomly mating unselected population, characterized by high genetic diversity and constitute a valuable resource for conservation and improvement. [source]


Genetic characterisation of traditional chestnut varieties in Italy using microsatellites (simple sequence repeats) markers

ANNALS OF APPLIED BIOLOGY, Issue 1 2010
M.A. Martín
European chestnut (Castanea sativa) is an important multipurpose tree that has been cultivated for wood and fruit in the Mediterranean basin since ancient times. Cultivation of traditional chestnut varieties has a long tradition in Italy, where cultivars have been selected over centuries as a function of the best nut traits. In this study, 94 grafted chestnuts corresponding to 26 representative cultivars from Italy were evaluated by seven simple sequence repeat (SSR) markers to establish whether they corresponded to varieties in the narrow sense. The results allowed 20 genotypes to be identified that corresponded to the same number of clones. In total, 52 alleles were identified, eight of which were exclusive. Cases of homonymies and synonymies were detected. Moreover, our results highlighted a considerable genetic uniformity among ,Marrone-type' cultivars and, on the contrary, a high genetic diversity among the evaluated cultivars demonstrating that this is a valuable germplasm and an important genetic resource to be preserved. [source]


Production of a base population and its responses to F1 selection in the bay scallop, Argopecten irradians irradians Lamarck (1819)

AQUACULTURE RESEARCH, Issue 9 2008
Haibin Zhang
Abstract A base population of the bay scallop, Argopecten irradians irradians Lamarck, was produced by crossing two cultured bay scallop populations. After 1 year of rearing, the top 10% truncation selection of the top 10% (i=1.755) was carried out in the base population of about 1300 adults. A control parental group with a an identical number to the select parental group was randomly selected from the entire population before isolation of the select parental group. The result showed that, at the larval stage, the growth rate of larvae in the selected line was significantly higher than that of the control (P<0.05), and that the genetic gain was 6.78%. Owing to the lower density of control at the spat stage, the mean shell length of the control line was larger than that of the select line at day 100. When the same density was adjusted between two lines in the grow-out stage (from day 100 to 160), the daily growth rate of the selected line was significantly higher than that of the control line (P<0.05). Survival of the select line was significantly larger than that of the control line in the grow-out stage. In conclusion, the results obtained from this experiment indicate that selective breeding from a base population with a high genetic diversity established by mass spawning between different populations appears to be a promising method of genetic improvement in bay scallop, A. irradians irradians Lamarck. [source]