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Genetic Monitoring (genetic + monitoring)
Selected AbstractsRole of Genetic Refuges in the Restoration of Native Gene Pools of Brown TroutCONSERVATION BIOLOGY, Issue 4 2009ROSA M. ARAGUAS introgresión de piscifactoría; pautas de manejo; acervos génicas nativas; refugios genéticos; repoblación de peces Abstract:,Captive-bred animals derived from native, alien, or hybrid stocks are often released in large numbers in natural settings with the intention of augmenting harvests. In brown trout (Salmo trutta), stocking with hatchery-reared non-native fish has been the main management strategy used to maintain or improve depleted wild brown trout populations in Iberian and other Mediterranean regions. This measure has become a serious threat to the conservation of native genetic diversity, mainly due to introgressive hybridization. Aware of this risk, the agency responsible for management of brown trout in the eastern Pyrenees (Spain) created "brown trout genetic refuges" to preserve the integrity of brown trout gene pools in this region. Within refuge areas, the prerefuge status with respect to fishing activities has been maintained, but hatchery releases have been banned completely. We evaluated this management strategy through a comparison of the stocking impact on native populations that accounted for stocking histories before and after refuge designations and fishing activities. In particular we examined the relevant scientific, cultural, and political challenges encountered. Despite agency willingness to change fishery policies to balance exploitation and conservation, acceptance of these new policies by anglers and genetic monitoring of refuge populations should also be considered. To improve management supported by genetic refuges, we suggest focusing on areas where the public is more receptive, considering the situation of local native diversity, and monitoring of adjacent introgressed populations. We recommend the use of directional supportive breeding only when a population really needs to be enhanced. In any case, management strategies should be developed to allow for protection within the context of human use. Resumen:,Animales criados en cautiverio derivados de individuos nativos, exóticos o híbridos a menudo son liberados en grandes cantidades en ambientes naturales con la intención de incrementar su explotación. En la trucha común (Salmo trutta), la repoblación con peces no nativos criados en granjas ha sido la principal estrategia de manejo utilizada para mantener o mejorar poblaciones naturales de trucha común en la Peninsula Ibérica y otras regiones Mediterráneas. Esta medida se ha convertido en una seria amenaza para la conservación de la diversidad genética nativa, debido principalmente a la hibridación introgresiva. Consciente de este riesgo, la agencia responsable del manejo de la trucha común en los Pirineos orientales (España) creó"refugios genéticos de trucha común" para preservar la integridad de las acervos genéticos de trucha común en esta región. Dentro de las áreas de refugio, se ha mantenido el estatus previo al refugio con respecto a las actividades pesqueras pero las liberaciones de peces de piscifactoría han sido completamente prohibidas. Evaluamos esta estrategia de manejo mediante la comparación del impacto de la repoblación sobre las poblaciones nativas que registraron historias de repoblación antes y después de la designación de refugios y de actividades pesqueras. En particular, examinamos los significativos retos científicos, culturales y políticos que encontramos. A pesar de la disponibilidad de la agencia para cambiar las políticas de pesca hacia un equilibrio entre la explotación y la conservación, también se debe considerar la aceptación de estas nuevas políticas por los pescadores y el monitoreo genético de las poblaciones en los refugios. Para mejorar el manejo en los refugios genéticos sugerimos centrarse en las áreas donde el público es más receptivo, considerando la situación de la diversidad nativa local y el monitoreo de las poblaciones introgresadas adyacentes. Recomendamos la utilización de la cría de apoyo direccional solo cuando una población realmente requiera ser mejorada. En cualquier caso, se deberían desarrollar estrategias de manejo para permitir la protección en el contexto del uso por el hombre. [source] An overlooked DNA source for non-invasive genetic analysis in birdsJOURNAL OF AVIAN BIOLOGY, Issue 1 2005Márton B. Horváth Non-invasive sampling is a useful tool for genetic analyses of endangered and/or elusive species, but it is often inapplicable due to the low quality and quantity of the DNA obtained. In this study we show that the blood clot located in the superior umbilicus of the feather shaft is a better source of DNA than the previously used tip samples from moulted feathers. We found that feather clots from museum specimens provided results nearly as good as footpad and better than those from the more commonly used museum skin snips. Feather clots proved to be a good source of DNA for genetic analysis that will significantly facilitate genetic monitoring of wild bird populations. [source] Genetic effective size, Ne, tracks density in a small freshwater cyprinid, Pecos bluntnose shiner (Notropis simus pecosensis)MOLECULAR ECOLOGY, Issue 14 2010MEGAN J. OSBORNE Abstract Genetic monitoring tracks changes in measures of diversity including allelic richness, heterozygosity and genetic effective size over time, and has emerged as an important tool for understanding evolutionary consequences of population management. One proposed application of genetic monitoring has been to estimate abundance and its trajectory through time. Here, genetic monitoring was conducted across five consecutive year for the Pecos bluntnose shiner, a federally threatened minnow. Temporal changes in allele frequencies at seven microsatellite DNA loci were used to estimate variance effective size (NeV) across adjacent years in the time series. Likewise, effective size was computed using the linkage disequilibrium method (NeD) for each sample. Estimates of Ne were then compared to estimates of adult fish density obtained from traditional demographic monitoring. For Pecos bluntnose shiner, density (catch-per-unit-effort), NeV and NeD were positively associated across this time series. Results for Pecos bluntnose shiner were compared to a related and ecologically similar species, the Rio Grande silvery minnow. In this species, density and NeV were negatively associated, which suggested decoupling of abundance and effective size trajectories. Conversely, density and NeD were positively associated. For Rio Grande silvery minnow, discrepancies among estimates of Ne and their relationships with adult fish density could be related to effects of high variance in reproductive success in the wild and/or effects of supplementation of the wild population with captive-bred and reared fish. The efficacy of Ne as a predictor of density and abundance may depend on intrinsic population dynamics of the species and how these dynamics are influenced by the landscape features, management protocols and other factors. [source] Spatio-temporal variation in the genetic composition of wild populations of pearl oyster (Pinctada margaritifera cumingii) in French Polynesia following 10 years of juvenile translocationMOLECULAR ECOLOGY, Issue 7 2004S. Arnaud-Haond Abstract The genetic impact of the cultural practice of spat collection and translocation between genetically distinct stocks of black-lipped pearl oyster, Pinctada margaritifera cumingii, was studied by comparing samples collected in the 1980s and 2000s from seven atolls in French Polynesia. An amova revealed homogenization of the previously genetically distinct wild stocks of Tuamotu-Gambier and Society archipelagos (the indices of genetic differentiation among archipelagos and among populations within archipelagos, respectively, ,CT and ,ST, decreased from 0.032* and 0.025*, respectively, to 0.006NS and 0.007NS). These results suggest high success of spontaneous reproduction in farms, probably due to the very high density of cultivated pearl oysters, and underline the importance of genetic monitoring of future hatchery produced stocks. [source] Characterization of microsatellite loci in silver carp (Hypophthalmichthys molitrix), and cross-amplification in other cyprinid speciesMOLECULAR ECOLOGY RESOURCES, Issue 3 2006A. A. GHEYAS Abstract Captive populations of silver carp (Hypophthalmichthys molitrix), a major aquaculture species in Asia, would undoubtedly benefit from genetic monitoring and improvement programs. We report the isolation and preliminary characterization of 16 microsatellite loci derived from both conventional and microsatellite-enriched libraries. Inheritance studies confirmed the allelic nature of observed polymorphisms at all loci, while identifying null alleles at two loci. These loci, having varying degrees of polymorphism, should provide useful markers for applied genetic studies. A high degree of cross-amplification among 10 other cyprinid species suggests that these loci may have more widespread utility. [source] Combining genetic and ecological data to assess the conservation status of the endangered Ethiopian walia ibexANIMAL CONSERVATION, Issue 2 2009B. Gebremedhin Abstract Knowledge about the phylogenetic history, genetic variation and ecological requirements of a species is important for its conservation and management. Unfortunately, for many species this information is lacking. Here we use multiple approaches (phylogenetics, population genetics and ecological modelling) to evaluate the evolutionary history and conservation status of Capra walie, an endangered flagship species of wild goat endemic to Ethiopia. The analysis of mitochondrial cytochrome b and Y-chromosome DNA sequences suggests that C. walie forms a monophyletic clade with Capra nubiana, but potentially has been isolated for up to 0.8 million years from this closely related species. Microsatellite DNA analyses show that C. walie has very low genetic variation (mean heterozygosity=0.35) compared with other endangered mammals. This reduced variation likely derives from a prolonged demographic decline and small effective population size. Ecological niche modelling using the bioclimatic features of habitats occupied by C. walie, suggests ecological differences between C. walie and C. nubiana, and identifies the areas most suitable for future reintroductions of C. walie. The genetic and bioclimatic data suggest that C. walie is distinct and requires immediate conservation actions including genetic monitoring and reintroductions to establish independent populations. This study illustrates how combining noninvasive sampling along with genetic and ecological (bioclimatic) approaches can help assess conservation status of poorly known species. [source] Widespread hybridization between the Greater Spotted Eagle Aquila clanga and the Lesser Spotted Eagle Aquila pomarina (Aves: Accipitriformes) in EuropeBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 3 2010ÜLO VÄLI Hybridization is a significant threat for endangered species and could potentially even lead to their extinction. This concern applies to the globally vulnerable Greater Spotted Eagle Aquila clanga, a species that co-occurs, and potentially interbreeds, with the more common Lesser Spotted Eagle Aquila pomarina in a vast area of Eastern Europe. We applied single nucleotide polymorphism (SNP) and microsatellite markers in order to study hybridization and introgression in 14 European spotted eagle populations. We detected hybridization and/or introgression in all studied sympatric populations. In most regions, hybridization took place prevalently between A. pomarina males and A. clanga females, with introgression to the more common A. pomarina. However, such a pattern was not as obvious in regions where A. clanga is still numerous. In the course of 16 years of genetic monitoring of a mixed population in Estonia, we observed the abandonment of A. clanga breeding territories and the replacement of A. clanga pairs by A. pomarina, whereby on several occasions hybridization was an intermediate step before the disappearance of A. clanga. Although the total number of Estonian A. clanga × A. pomarina pairs was twice as high as that of A. clanga pairs, the number of pairs recorded yearly were approximately equal, which suggests a higher turnover rate in interbreeding pairs. This study shows that interspecific introgressive hybridization occurs rather frequently in a hybrid zone at least 1700-km wide: it poses an additional threat for the vulnerable A. clanga, and may contribute to the extinction of its populations. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100, 725,736. [source] | ||||||||||||||||||||||