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Experimental Dataset (experimental + dataset)
Selected AbstractsPermutation tests for factorially designed neuroimaging experimentsHUMAN BRAIN MAPPING, Issue 3 2004John Suckling Abstract Permutation methods for analysis of functional neuroimaging data acquired as factorially designed experiments are described and validated. The F ratio was estimated for main effects and interactions at each voxel in standard space. Critical values corresponding to probability thresholds were derived from a null distribution sampled by appropriate permutation of observations. Spatially informed, cluster-level test statistics were generated by applying a preliminary probability threshold to the voxel F maps and then computing the sum of voxel statistics in each of the resulting three-dimensional clusters, i.e., cluster "mass." Using simulations comprising two between- or within-subject factors each with two or three levels, contaminated by Gaussian and non-normal noise, the voxel-wise permutation test was compared to the standard parametric F test and to the performance of the spatially informed statistic using receiver operating characteristic (ROC) curves. Validity of the permutation-testing algorithm and software is endorsed by almost identical performance of parametric and permutation tests of the voxel-level F statistic. Permutation testing of suprathreshold voxel cluster mass, however, was found to provide consistently superior sensitivity to detect simulated signals than either of the voxel-level tests. The methods are also illustrated by application to an experimental dataset designed to investigate effects of antidepressant drug treatment on brain activation by implicit sad facial affect perception in patients with major depression. Antidepressant drug effects in left amygdala and ventral striatum were detected by this software for an interaction between time (within-subject factor) and group (between-subject factor) in a representative two-way factorial design. Hum. Brain Mapping 22:193,205, 2004. © 2004 Wiley-Liss, Inc. [source] An evaluation of mathematical models for predicting skin permeabilityJOURNAL OF PHARMACEUTICAL SCIENCES, Issue 1 2008Guoping Lian Abstract A number of mathematical models have been proposed for predicting skin permeability, mostly empirical and very few are deterministic. Early empirical models use simple lipophilicity parameters. The recent trend is to use more complicated molecular structure descriptors. There has been much debate on which models best predict skin permeability. This article evaluates various mathematical models using a comprehensive experimental dataset of skin permeability for 124 chemical compounds compiled from various sources. Of the seven models compared, the deterministic model of Mitragotri gives the best prediction. The simple quantitative structure permeability relationships (QSPR) model of Potts and Guy gives the second best prediction. The two models have many features in common. Both assume the lipid matrix as the pathway of transdermal permeation. Both use octanol,water partition coefficient and molecular size. Even the mathematical formulae are similar. All other empirical QSPR models that use more complicated molecular structure descriptors fail to provide satisfactory prediction. The molecular structure descriptors in the more complicated QSPR models are empirically related to skin permeation. The mechanism on how these descriptors affect transdermal permeation is not clear. Mathematically it is an ill-defined approach to use many colinearly related parameters rather than fewer independent parameters in multi-linear regression. © 2007 Wiley-Liss, Inc. and the American Pharmacists Association J Pharm Sci 97:584,598, 2008 [source] Comparison of Predictivities of Log,P Calculation Models Based on Experimental Data for 134 Simple Organic CompoundsMOLECULAR INFORMATICS, Issue 1 2007Yuki Sakuratani Abstract Predictivities of six log,P calculation models (CLOGP, KOWWIN, ACD/LOGP, SLOGP, VLOGP and COSMO thermo) are compared using a common experimental dataset, which does not contain any of the compounds used in the training set for the six models. The former three models, which are based on fragment methods, showed better accuracy (r=0.87,0.91) than SLOGP, which is based on the atom contribution method and VLOGP and COSMO thermo, which are property-based models. The trends of prediction by each model are described based on chemical structure and molecular weight. For all six models, several compounds had a significantly greater calculated log,P value than the experimental log,P value. It is interesting to note that most of these compounds had ionic moieties. [source] A choice prediction competition: Choices from experience and from descriptionJOURNAL OF BEHAVIORAL DECISION MAKING, Issue 1 2010Ido Erev Abstract Erev, Ert, and Roth organized three choice prediction competitions focused on three related choice tasks: One shot decisions from description (decisions under risk), one shot decisions from experience, and repeated decisions from experience. Each competition was based on two experimental datasets: An estimation dataset, and a competition dataset. The studies that generated the two datasets used the same methods and subject pool, and examined decision problems randomly selected from the same distribution. After collecting the experimental data to be used for estimation, the organizers posted them on the Web, together with their fit with several baseline models, and challenged other researchers to compete to predict the results of the second (competition) set of experimental sessions. Fourteen teams responded to the challenge: The last seven authors of this paper are members of the winning teams. The results highlight the robustness of the difference between decisions from description and decisions from experience. The best predictions of decisions from descriptions were obtained with a stochastic variant of prospect theory assuming that the sensitivity to the weighted values decreases with the distance between the cumulative payoff functions. The best predictions of decisions from experience were obtained with models that assume reliance on small samples. Merits and limitations of the competition method are discussed. Copyright © 2009 John Wiley & Sons, Ltd. [source] Oscillations in growth of multicellular tumour spheroids: a revisited quantitative analysisCELL PROLIFERATION, Issue 4 2010A. S. Gliozzi Objectives:, Multicellular tumour spheroids (MTS) provide an important tool for study of the microscopic properties of solid tumours and their responses to therapy. Thus, observation of large-scale volume oscillations in MTS, reported several years ago by two independent groups (1,2), in our opinion represent a remarkable discovery, particularly if this could promote careful investigation of the possible occurrence of volume oscillations of tumours ,in vivo'. Materials and methods:, Because of high background noise, quantitative analysis of properties of observed oscillations has not been possible in previous studies. Such an analysis can be now performed, thanks to a recently proposed approach, based on formalism of phenomenological universalities (PUN). Results:, Results have provided unambiguous confirmation of the existence of MTS volume oscillations, and quantitative evaluation of their properties, for two tumour cell lines. Proof is based not only on quality of fitting of the experimental datasets, but also on determination of well-defined values of frequency and amplitude of the oscillations for each line investigated, which would not be consistent with random fluctuation. Conclusions:, Biological mechanisms, which can be directly responsible for observed oscillations, are proposed, which relates also to recent work on related topics. Further investigations, both at experimental and at modelling levels, are also suggested. Finally, from a methodological point of view, results obtained represent further confirmation of applicability and usefulness of the PUN approach. [source] Request for existing experimental datasets on color differencesCOLOR RESEARCH & APPLICATION, Issue 2 2007Manuel Melgosa Abstract The Technical Committee 1-55 of the International Commission on Illumination on "Uniform color space for industrial color difference evaluation" is requesting the submission of datasets for use in developing a new approximately uniform color space for industrial use. The data should be submitted to the TC Chair, Dr. Manuel Melgosa at the University of Granada. © 2007 Wiley Periodicals, Inc. Col Res Appl, 32, 159, 2007 [source] | |||||||||||||