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Extant Taxa (extant + taxa)
Selected AbstractsEcogeographic size variation in small-bodied subfossil primates from Ankilitelo, Southwestern MadagascarAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 2 2007Kathleen M. Muldoon Abstract Variation in body size is well documented for both extant and extinct Malagasy primates, and appears to be correlated with geographic patterns of resource seasonality. Less attention has been paid to extant lemurs in subfossil collections, although it has been suggested that subfossil forms of extant species are characterized by greater size than their modern counterpart. This trend of phyletic size change has been related to climate change, habitat fragmentation, or human hunting. However, space- and time-averaging in the subfossil samples of previous studies may have obscured more general ecogeographic patterns underlying these size differences. Our objective is to examine size variation in subfossil still-extant primates within a regional comparative context to determine if subfossil and living forms conform to similar ecogeographic patterns. We report on the subfossil still-extant primate assemblage from Ankilitelo, southwestern Madagascar (,500 yr BP) to test this hypothesis. The Ankilitelo primates were compared with museum specimens of known locality. Extant taxa were assigned to one of five distinct ecogeographic regions, including spiny thicket, dry deciduous forest, succulent woodland, lowland and subhumid rainforest. Comparisons of tooth size in extant lemurs reveal significant geographical patterns of variation within genera. In general, the primates from Ankilitelo are indeed larger than their modern counterpart. However, these differences fit an ecoregional model of size variation, whereby Ankilitelo species are comparable in size to living forms inhabiting ecoregions present near the cave today. This suggests that Malagasy primates have been subjected to similar patterns of resource seasonality for at least 500 years. Am J Phys Anthropol, 2007. © 2007 Wiley-Liss, Inc. [source] Fossils provide better estimates of ancestral body size than do extant taxa in fishesACTA ZOOLOGICA, Issue 2009James S. Albert Abstract The use of fossils in studies of character evolution is an active area of research. Characters from fossils have been viewed as less informative or more subjective than comparable information from extant taxa. However, fossils are often the only known representatives of many higher taxa, including some of the earliest forms, and have been important in determining character polarity and filling morphological gaps. Here we evaluate the influence of fossils on the interpretation of character evolution by comparing estimates of ancestral body size in fishes (non-tetrapod craniates) from two large and previously unpublished datasets; a palaeontological dataset representing all principal clades from throughout the Phanerozoic, and a macroecological dataset for all 515 families of living (Recent) fishes. Ancestral size was estimated from phylogenetically based (i.e. parsimony) optimization methods. Ancestral size estimates obtained from analysis of extant fish families are five to eight times larger than estimates using fossil members of the same higher taxa. These disparities arise from differential survival of large-bodied members of early branching lineages, and are not statistical or taphonomic artefacts. Estimates of ancestral size obtained from a limited but judicious selection of fossil fish taxa are more accurate than estimates from a complete dataset of extant fishes. [source] The intertarsal joint of the ostrich (Struthio camelus): Anatomical examination and function of passive structures in locomotionJOURNAL OF ANATOMY, Issue 6 2009Nina U. Schaller Abstract The ostrich (Struthio camelus) is the largest extant biped. Being flightless, it exhibits advanced cursorial abilities primarily evident in its characteristic speed and endurance. In addition to the active musculoskeletal complex, its powerful pelvic limbs incorporate passive structures wherein ligaments interact with joint surfaces, cartilage and other connective tissue in their course of motion. This arrangement may enable energy conservation by providing joint stabilisation, optimised limb segment orientation and automated positioning of ground contact elements independently of direct muscle control. The intertarsal joint is of particular interest considering its position near the mid-point of the extended limb and its exposure to high load during stance with significant inertial forces during swing phase. Functional-anatomical analysis of the dissected isolated joint describes the interaction of ligaments with intertarsal joint contours through the full motion cycle. Manual manipulation identified a passive engage-disengage mechanism (EDM) that establishes joint extension, provides bi-directional resistance prior to a transition point located at 115° and contributes to rapid intertarsal flexion at toe off and full extension prior to touch down. This effect was subsequently quantified by measurement of intertarsal joint moments in prepared anatomical specimens in a neutral horizontal position and axially-loaded vertical position. Correlation with kinematic analyses of walking and running ostriches confirms the contribution of the EDM in vivo. We hypothesise that the passive EDM operates in tandem with a stringently coupled multi-jointed muscle-tendon system to conserve the metabolic cost of locomotion in the ostrich, suggesting that a complete understanding of terrestrial locomotion across extinct and extant taxa must include functional consideration of the ligamentous system. [source] PHYLOGENETIC SELECTION OF A RESOURCE: A NEW USE FOR CLADISTICSJOURNAL OF PHYCOLOGY, Issue 2000K. M. Dreckmann A phylogenetic model for the selection of commercial resources using the cladistic method is proposed. The group selected as an example was the marine agarophyte red algal genus Gracilaria Greville. We suggest the use of the cladistic principle of evolutionary transformational series in order to test the quality of agars instead of the assay-herror traditional method that consumes time and budget. If we asume that the "good quality of agar" in extant taxa is a sinapomorphic character (but not a reliable taxonomic one), then taxa included in the same monophiletic clade in which the species with "good quality of agar" are, has a high evolutionary posibility to share that character. In order to do this we have to incorporate to the set of available specific characters, those of the taxa actually used as a agar source but not present in the area under scope. A complete set of the basic cladistic data required for run the most popular program currently in use (PAUP) are provided. We applied the model to the Mexican Atlantic species and found that, using Gracilaria chilensis and G. cornea as "indicator taxa," and found Mexican populations of G. crassissima, G. caudata, G. cervicornis and Gracilariopsis lemaneiformis are candidates for a study of yield and agar properties. [source] Estimating ancestral distributions of lineages with uncertain sister groups: a statistical approach to Dispersal,Vicariance Analysis and a case using Aesculus L. (Sapindaceae) including fossilsJOURNAL OF SYSTEMATICS EVOLUTION, Issue 5 2009A.J. HARRIS Abstract, We propose a simple statistical approach for using Dispersal,Vicariance Analysis (DIVA) software to infer biogeographic histories without fully bifurcating trees. In this approach, ancestral ranges are first optimized for a sample of Bayesian trees. The probability P of an ancestral range r at a node is then calculated as where Y is a node, and F(rY) is the frequency of range r among all the optimal solutions resulting from DIVA optimization at node Y, t is one of n topologies optimized, and Pt is the probability of topology t. Node Y is a hypothesized ancestor shared by a specific crown lineage and the sister of that lineage "x", where x may vary due to phylogenetic uncertainty (polytomies and nodes with posterior probability <100%). Using this method, the ancestral distribution at Y can be estimated to provide inference of the geographic origins of the specific crown group of interest. This approach takes into account phylogenetic uncertainty as well as uncertainty from DIVA optimization. It is an extension of the previously described method called Bayes-DIVA, which pairs Bayesian phylogenetic analysis with biogeographic analysis using DIVA. Further, we show that the probability P of an ancestral range at Y calculated using this method does not equate to pp*F(rY) on the Bayesian consensus tree when both variables are <100%, where pp is the posterior probability and F(rY) is the frequency of range r for the node containing the specific crown group. We tested our DIVA-Bayes approach using Aesculus L., which has major lineages unresolved as a polytomy. We inferred the most probable geographic origins of the five traditional sections of Aesculus and of Aesculus californica Nutt. and examined range subdivisions at parental nodes of these lineages. Additionally, we used the DIVA-Bayes data from Aesculus to quantify the effects on biogeographic inference of including two wildcard fossil taxa in phylogenetic analysis. Our analysis resolved the geographic ranges of the parental nodes of the lineages of Aesculus with moderate to high probabilities. The probabilities were greater than those estimated using the simple calculation of pp*F(ry) at a statistically significant level for two of the six lineages. We also found that adding fossil wildcard taxa in phylogenetic analysis generally increased P for ancestral ranges including the fossil's distribution area. The ,P was more dramatic for ranges that include the area of a wildcard fossil with a distribution area underrepresented among extant taxa. This indicates the importance of including fossils in biogeographic analysis. Exmination of range subdivision at the parental nodes revealed potential range evolution (extinction and dispersal events) along the stems of A. californica and sect. Parryana. [source] THE CANAL SYSTEM IN SCLERITES OF LOWER CAMBRIAN SINOSACHITES (HALKIERIIDAE: SACHITIDA): SIGNIFICANCE FOR THE MOLLUSCAN AFFINITIES OF THE SACHITIDSPALAEONTOLOGY, Issue 4 2009JAKOB VINTHER Abstract:, The halkieriids (Sachitida He, 1980) from the Early to Mid Cambrian possess a hollow sclerite with a complex branching canal system. An analysis of the canal system morphology in the halkieriid Sinosachites (Thambetolepis) delicatus (Jell, 1981) from South Australia reveals similarities to the aesthete canal system in the shell plates of chitons, which has been analysed in a number of extant taxa. The compartments, referred to as macro-aesthetes in chitons, and lateral canals in halkieriids, have overlapping diameters and are constrained in morphology by the space of accommodation by maintaining a constant width, whereas length is more variable. Both canal systems are morphologically distinct from shell pores of other lophotrochozoans and known mollusc classes. Similarities in sclerite growth, microstructure and mineralogy further suggest that halkieriids, along with the other sachitids, are molluscs, most likely stem aculiferans (Polyplacophora and Aplacophora). [source] Cladistic Analysis of A Problematic Ammonite Group: the Hamitidae (Cretaceous, Albian,turonian) and Proposals for New Cladistic TermsPALAEONTOLOGY, Issue 4 2002Neale MonksArticle first published online: 24 NOV 200 The Hamitidae are a family of mid,Cretaceous heteromorph ammonites including lineages leading to four other families. Problems are outlined in trying to describe the phylogeny of completely extinct groups such as these heteromorph ammonites using the existing cladistic terminology, which is largely concerned with extant taxa and their ancestors. To solve these problems, two new terms are proposed: ,crown groups and ,stem groups, which are equivalent to crown and stem groups in terms of the evolutionary history of a clade, but are not defined on the basis of extant taxa. Instead they are defined by the topology of the phylogenetic tree, the ,crown group being a clade defined by synapomorphies but which gave rise to no descendants. A ,stem group is a branch of a phylogenetic tree which comprises the immediate sister groups of a given ,crown group but is not itself a clade. Examples of these terms are described here with reference to the phylogeny of the Hamitidae and their descendants. The Hamitidae are paraphyletic and form ,stem groups to a number of ,crown groups, namely the Anisoceratidae, Baculitidae, Scaphitidae, and Turrilitidae. The definitions of the genera and subgenera are refined with respect to the type species and the clades within which they occur, and four new genera are described: Eohamites, Helicohamites, Sziveshamites, and Planohamites. [source] Beyond Gorilla and Pongo: Alternative models for evaluating variation and sexual dimorphism in fossil hominoid samplesAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 2 2009Jeremiah E. Scott Abstract Sexual size dimorphism in the postcanine dentition of the late Miocene hominoid Lufengpithecus lufengensis exceeds that in Pongo pygmaeus, demonstrating that the maximum degree of molar size dimorphism in apes is not represented among the extant Hominoidea. It has not been established, however, that the molars of Pongo are more dimorphic than those of any other living primate. In this study, we used resampling-based methods to compare molar dimorphism in Gorilla, Pongo, and Lufengpithecus to that in the papionin Mandrillus leucophaeus to test two hypotheses: (1) Pongo possesses the most size-dimorphic molars among living primates and (2) molar size dimorphism in Lufengpithecus is greater than that in the most dimorphic living primates. Our results show that M. leucophaeus exceeds great apes in its overall level of dimorphism and that L. lufengensis is more dimorphic than the extant species. Using these samples, we also evaluated molar dimorphism and taxonomic composition in two other Miocene ape samples,Ouranopithecus macedoniensis from Greece, specimens of which can be sexed based on associated canines and P3s, and the Sivapithecus sample from Haritalyangar, India. Ouranopithecus is more dimorphic than the extant taxa but is similar to Lufengpithecus, demonstrating that the level of molar dimorphism required for the Greek fossil sample under the single-species taxonomy is not unprecedented when the comparative framework is expanded to include extinct primates. In contrast, the Haritalyangar Sivapithecus sample, if itrepresents a single species, exhibits substantially greater molar dimorphism than does Lufengpithecus. Given these results, the taxonomic status of this sample remains equivocal. Am J Phys Anthropol, 2009. © 2009 Wiley-Liss, Inc. [source] Body mass in cercopithecidae (Primates, Mammalia): Estimation and scaling in extinct and extant taxaAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 4 2002Brenda R. Benefit No abstract is available for this article. [source] The Facial Integument of Centrosaurine Ceratopsids: Morphological and Histological Correlates of Novel Skin StructuresTHE ANATOMICAL RECORD : ADVANCES IN INTEGRATIVE ANATOMY AND EVOLUTIONARY BIOLOGY, Issue 9 2009Tobin L. Hieronymus Abstract The horned dinosaur Pachyhinosaurus possesses rugose bony bosses across the skull roof in lieu of the projecting bony horn cores seen in most ceratopsians. This elaboration of typical ceratopsian ornaments provides an opportunity to test hypotheses of ceratopsian facial skin morphology and function. We analyze bone morphology and histology associated with several classes of skin features in extant amniotes using a classification tree analysis. We isolate key osteological and histological correlates for unpreserved skin structures, including both a pattern of pitting and resorption characteristic of muskox (Ovibos) frontal horn boss, and a pattern of metaplastic ossification characteristic of rhinoceros nasal horn boss. We also describe correlates for other skin features, such as epidermal scales and horn sheaths. Dermatocranial elements from centrosaurine ceratopsians are then examined for the same osteological and histological correlates. From this comparison we propose that the rugose bosses that replace horn cores in many centrosaurine dinosaurs, most notably Achelousaurus and Pachyrhinosaurus, were covered by a thick pad of cornified skin derived from the caudodorsal side of the primitive horn sheath comparable to the horny boss of extant muskoxen (Ovibos). We examine extant taxa with skin morphologies similar to Pachyrhinosaurus for consistent adaptive relationships between structure and behavior. We determine that high-energy headbutting is consistently associated with the acquisition of thick cornified pads, seen in muskoxen as well as helmeted hornbills [Buceros (=Rhinoplax) vigil] and African buffalo (Syncerus). The association of the bony ornaments of Pachyrhinosaurus with risky agonistic behaviors casts doubt on the role of species recognition as a primary selection pressure driving the diversity of all ceratopsian horns. We conclude that social selection (a broad form of intraspecific competition) is a more appropriate explanation for the diversity of centrosaurine ceratopsian ornaments in the Late Cretaceous. Anat Rec, 292:1370,1396, 2009. © 2009 Wiley-Liss, Inc. [source] Tracking island colonization history and phenotypic shifts in Indian Ocean bulbuls (Hypsipetes: Pycnonotidae)BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 3 2005BEN H. WARREN Molecular phylogenies of island organisms provide useful systems for testing hypotheses of convergent or parallel evolution, since selectively neutral molecular characters are likely to be independent of phenotype, and the existence of similar environments on multiple isolated islands provides numerous opportunities for populations to evolve independently under the same constraints. Here we construct a phylogenetic hypothesis for Hypsipetes bulbuls of the western Indian Ocean, and use this to test hypotheses of colonization pattern and phenotypic change among islands of the region. Mitochondrial sequence data were collected from all extant taxa of the region, combined with sequence data from relevant lineages in Asia. Data are consistent with a single Hypsipetes colonization of the western Indian Ocean from Asia within the last 2.6 Myr. The expansion of Hypsipetes appears to have occurred rapidly, with descendants found across the breadth of its western Indian Ocean range. The data suggest that a more recent expansion of Hypsipetes madagascariensis from Madagascar led to the colonization of Aldabra and a secondary colonization of the Comoros. Groupings of western Indian Ocean Hypsipetes according to phenotypic similarities do not correspond to mtDNA lineages, suggesting that these similarities have evolved by convergence or parallelism. The direction of phenotypic change cannot be inferred with confidence, since the primary expansion occurred rapidly relative to the rate of mtDNA substitution, and the colonization sequence remains uncertain. However, evidence from biogeography and comparison of independent colonization events are consistent with the persistence of a small grey continental bulbul in India and Madagascar, and multiple independent origins of large size and green plumage in insular island populations of the Comoros, Mascarenes and Seychelles. © 2005 The Linnean Society of London, Biological Journal of the Linnean Society, 2005, 85, 271,287. [source] Phylogeny of snout butterflies (Lepidoptera: Nymphalidae: Libytheinae): combining evidence from the morphology of extant, fossil, and recently extinct taxaCLADISTICS, Issue 3 2009Akito Y. Kawahara Snout butterflies (Nymphalidae: Libytheinae) are morphologically one of the most unusual groups of Lepidoptera. Relationships among libytheines remain uncertain, especially in the placement of the recently extinct Libythea cinyras and two fossils, L. florissanti, and L. vagabunda. The aim of this study is to present the first phylogenetic hypothesis of Libytheinae utilizing all available morphological data from extant and extinct species. Forty-three parsimony-informative characters were coded, and the all-taxa analysis resulted in six most parsimonious trees (length 92 steps, CI = 0.66, RI = 0.82). The subfamily was resolved as monophyletic and was split into Old World and New World clades. Inclusion of extinct species with considerable missing data had little effect on relationships of extant taxa, although Bremer support values and jackknife frequencies generally decreased if extinct species were included. In order to preserve the monophyly of extant genera, two fossils are assigned to Libytheana for the first time (L. florissanti comb. n. and L. vagabunda comb. n.). This study demonstrates the value of morphological data in phylogenetic analysis, and highlights the contribution that can be made by scoring extinct taxa and including them directly into the analysis. [source] Phylogeny of the sea spiders (Arthropoda, Pycnogonida) based on direct optimization of six loci and morphologyCLADISTICS, Issue 3 2007Claudia P. Arango Higher-level phylogenetics of Pycnogonida has been discussed for many decades but scarcely studied from a cladistic perspective. Traditional taxonomic classifications are yet to be tested and affinities among families and genera are not well understood. Pycnogonida includes more than 1300 species described, but no systematic revisions at any level are available. Previous attempts to propose a phylogeny of the sea spiders were limited in characters and taxon sampling, therefore not allowing a robust test of relationships among lineages. Herein, we present the first comprehensive phylogenetic analysis of the Pycnogonida based on a total evidence approach and Direct Optimization. Sixty-three pycnogonid species representing all families including fossil taxa were included. For most of the extant taxa more than 6 kb of nuclear and mitochondrial DNA and 78 morphological characters were scored. The most parsimonious hypotheses obtained in equally weighted total evidence analyses show the two most diverse families Ammotheidae and Callipallenidae to be non-monophyletic. Austrodecidae + Colossendeidae + Pycnogonidae are in the basal most clade, these are morphologically diverse groups of species mostly found in cold waters. The raising of the family Pallenopsidae is supported, while Eurycyde and Ascorhynchus are definitely separated from Ammotheidae. The four fossil taxa are grouped within living Pycnogonida, instead of being an early derived clade. This phylogeny represents a solid framework to work towards the understanding of pycnogonid systematics, providing a data set and a testable hypothesis that indicate those clades that need severe testing, especially some of the deep nodes of the pycnogonid tree and the relationships of ammotheid and callipallenid forms. The inclusion of more rare taxa and additional sources of evidence are necessary for a phylogenetic classification of the Pycnogonida. © The Willi Hennig Society 2006. [source] | |||||||||||||||||||