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Evolutionary Scenarios (evolutionary + scenario)
Selected AbstractsEvolutionary conservation and divergence of the segmentation process in arthropodsDEVELOPMENTAL DYNAMICS, Issue 6 2007Wim G. M. Damen Abstract A fundamental characteristic of the arthropod body plan is its organization in metameric units along the anterior,posterior axis. The segmental organization is laid down during early embryogenesis. Our view on arthropod segmentation is still strongly influenced by the huge amount of data available from the fruit fly Drosophila melanogaster (the Drosophila paradigm). However, the simultaneous formation of the segments in Drosophila is a derived mode of segmentation. Successive terminal addition of segments from a posteriorly localized presegmental zone is the ancestral mode of arthropod segmentation. This review focuses on the evolutionary conservation and divergence of the genetic mechanisms of segmentation within arthropods. The more downstream levels of the segmentation gene network (e.g., segment polarity genes) appear to be more conserved than the more upstream levels (gap genes, Notch/Delta signaling). Surprisingly, the basally branched arthropod groups also show similarities to mechanisms used in vertebrate somitogenesis. Furthermore, it has become clear that the activation of pair rule gene orthologs is a key step in the segmentation of all arthropods. Important findings of conserved and diverged aspects of segmentation from the last few years now allow us to draw an evolutionary scenario on how the mechanisms of segmentation could have evolved and led to the present mechanisms seen in various insect groups including dipterans like Drosophila. Developmental Dynamics 236:1379,1391, 2007. © 2007 Wiley-Liss, Inc. [source] DOES EVOLUTION OF ITEROPAROUS AND SEMELPAROUS REPRODUCTION CALL FOR SPATIALLY STRUCTURED SYSTEMS?EVOLUTION, Issue 1 2000Esa Ranta Abstract., A persistent question in the evolution of life histories is the fitness trade-off between reproducing only once (semelparity) in a lifetime or reproducing repeated times in different seasons (iteroparity). The problem can be formulated into a research agenda by assuming that one reproductive strategy is resident (has already evolved) and by asking whether invasion (evolution) of an alternative reproductive strategy is possible. For a spatially nonstructured system, Bulmer (1994) derived the relationship v + PA < 1 (PA is adult survival; vbs and bs are offspring numbers for iteroparous and semelparous breeding strategies, respectively) at which semelparous population cannot be invaded by an iteroparous mutant. When the inequality is changed to v + PA > 1, invasion of a semelparous mutant is not possible. From the inequalities, it is easy to see that possibilities for evolutionary establishment of a novel reproductive strategy are rather narrow. We extended the evolutionary scenario into a spatially structured system with dispersal linkage among the subunits. In this domain, a rare reproductive strategy can easily invade a population dominated by a resident reproductive strategy. The parameter space enabling invasion is far more generous with spatially structured evolutionary scenarios than in a spatially nonstructured system. [source] Multiple invasions of Errantivirus in the genus DrosophilaINSECT MOLECULAR BIOLOGY, Issue 2 2008A. Ludwig Abstract Aiming to contribute to the knowledge of the evolutionary history of Errantivirus, a phylogenetic analysis of the env gene sequences of Errantivirus gypsy, gtwin, gypsy2, gypsy3, gypsy4 and gypsy6 was carried out in 33 Drosophilidae species. Most sequences were obtained from in silico searches in the Drosophila genomes. The complex evolutionary pattern reported by other authors for the gypsy retroelement was also observed in the present study, including vertical transmission, ancestral polymorphism, stochastic loss and horizontal transfer. Moreover, the elements gypsy2, gypsy3, gypsy4 and gypsy6 were shown to have followed an evolutionary model that is similar to gypsy. Fifteen new possible cases of horizontal transfer were suggested. The infectious potential of these elements may help elucidate the evolutionary scenario described in the present study. [source] Phylogeny and phylogeography of the Lozekia,Kovacsia species group (Gastropoda: Hygromiidae)JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 4 2009Zoltán Fehér Abstract The Lozekia,Kovacsia species group comprises three species of high conservation concern, Lozekia transsilvanica (Westerlund, 1876), Lozekia deubeli (M. Kimakowicz, 1890) and Kovacsia kovacsi (Varga and L. Pintér, 1972), which occupy relatively small ranges in the Carpathian-Pannonian region. Despite their conservation concern, the phylogeny and biogeographical history of these species have not been studied by molecular methods up to now. This study, based on mitochondrial cytochrome oxidase subunit I gene sequences, has two main objectives: (i) to infer the phylogenetic relationships within the group in order to test the latest morphology-based system, proposed by Nordsieck [1993, Das System der paläarktischen Hygromiidae (Gastropoda: Stylommatophora: Helicoidea). Arch Molluskenkunde 122:1] and (ii) to reconstruct the distribution history of the three species. The monophyly and thus the systematic distinctness of the three species was confirmed, but our findings do not support the monophyly of the Lozekia genus and therefore contradict the current system of the species group. Genetic diversity was found to be much higher within L. deubeli than within the other two species, a possible explanation of this phenomenon is that L. transsilvanica and K. kovacsi are more recently evolved, younger species. Nested clade phylogeographycal analysis showed that the three species evolved by fragmentation events; probably L. deubeli and the ancestor of the other two species split first. At the intraspecific level, fragmentation events, as well as range expansion, played a significant role in the biogeographical history of this species group. As our findings are based on a single mitochondrial gene, we feel premature to propose changes in the generally accepted system and nomenclature. Further molecular phylogenetic analyses, also involving nuclear DNA sequences, should clarify if the evolutionary scenario suggested by our data is valid, and the three species can indeed be placed within the same genus, Lozekia. Zusammenfassung Die Lozekia,Kovacsia Artengruppe umfasst drei endemische Arten, Lozekia transsilvanica (Westerlund, 1876), Lozekia deubeli (M. Kimakowicz, 1890) und Kovacsia kovacsi (Varga and L. Pintér, 1972), die relativ kleine Verbreitungsgebiete in der karpatisch-pannonischen Region besitzen. Trotz ihrer naturschutzfachlichen Bedeutung wurde die Phylogenie ind biogeographische Historie dieser Arten bisher nicht mit molekularen Methoden untersucht. In dieser Studie werden, basierend auf mitochondrialen COI-Sequenzen, zwei Hauptziele verfolgt: (i) Ermittlung der phylogenetischen Beziehungen in der Gruppe um das aktuelle morphologie.basierte System von Nordsieck (1993) zu testen, und (ii) Rekonstruktion der Verbreitungsgeschichte der drei Arten. In Übereinstimmung mit morphologischen Merkmalsausprägungen wurde die Monophylie und somit die systematische Eigenständigkeit der drei Arten bestätigt, im Gegensatz zur Monophylie der Gattung Lozekia. Die genetische Diversität in L. deubeli war viel höher als in den anderen beiden Arten. Eine mögliche Erklärung dieses Befundes ist, dass L. transsilvanica und K. kovacsi rezenter evolvierte, junge Arten sind. Eine Nested clade phylogeographical analysis (NCPA) zeigte, dass die drei Arten durch Fragmentierungsereignisse entstanden, wahrscheinlich teilten sich L. deubeli und der Vorläufer der anderen beiden Arten zuerst. Auf dem intraspezifischen Niveau spielten Fragmentierungsereignisse und ebenso Arealausdehnungen eine signifikante Rolle in der biogeographischen Geschichte der Artengruppe. Da unsere Ergebnisse auf einem einzigen mitochondrialen Gen basieren, ist es zu früh für Veränderungen am generell akzeptierten System und der Nomenklatur. Weitere molekular-phylogenetische Analysen, die auch nukleäre DNA sequenzen involvieren, müssen das auf unseren Daten basierende evolutionäre Szenario bestätigen und die Fragen klären, ob die drei Arten tatsächlich zur gleichen Gattung, Lozekia, gehören. [source] The phylogeny of the Praomys complex (Rodentia: Muridae) and its phylogeographic implicationsJOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 1 2002E. LECOMPTE Among the African Murinae (Rodentia, Muridae), the Praomys complex, whose systematics has been studied by different approaches, has raised numerous taxonomic problems. Different taxa, namely Praomys, Mastomys, Myomys and Hylomyscus have been considered either as separate genera or subgenera of Praomys. In order to understand the relationships within the Praomys complex and to test the monophyly of the genus Praomys, a cladistic analysis was conducted, based on morpho-anatomical factors involving different species of Praomys, Mastomys, Myomys and Hylomyscus. The results indicate that the Praomys complex is monophyletic, as are the genera Hylomyscus, Mastomys and Myomys, whereas the genus Praomys appears paraphyletic. Indeed, a group of species including Praomys jacksoni was found to be more closely related to the genera Mastomys and Myomys than to a Praomys tullbergi -group. The biotopes and the distribution areas of the species were mapped on the phylogeny. It appears that the different clades each present a relative ecological cohesion and are arranged according to a gradient from closed to open habitats. From there, an evolutionary scenario is proposed for the emergence of the different clades and species of the genus Praomys sensu stricto. Phylogénie du complexe Praomys (Rodentia: Muridae) et ses implications biogéographiques Au sein des Murinae africains (Rodentia, Muridae), le complexe Praomys, dont la systématique a étéétudiée par différentes approches, a soulevé de nombreux problèmes taxinomiques. Les différents taxons Praomys, Mastomys, Myomys et Hylomyscus ont été considérés tour à tour comme des genres séparés ou des sous-genres de Praomys. Afin d'appréhender les relations de parentéà l'intérieur du complexe Praomys ainsi que pour tester la monophylie du genre Praomys, nous avons conduit une étude cladistique basée sur la morpho-anatomie, incluant différentes espèces de Praomys, Mastomys, Myomys et Hylomyscus. Les résultats indiquent que le complexe Praomys est monophylétique, comme le sont les genres Hylomyscus, Mastomys et Myomys, alors que le genre Praomys est paraphylétique. En effet un groupe d'espèce incluant P. jacksoni se trouve être plus proche des genres Mastomys et Myomys que du groupe incluant Praomys tullbergi. Les biotopes et les aires de distributions des espèces ont été plaquées sur la phylogénie. Il apparaît alors que les différents clades présentent chacun une relative unitéécologique et sont agencés suivant un gradient des milieux fermés vers les milieux ouverts. A partir de ces résultats, un scénario évolutif, basé sur les oscillations climatiques quaternaires, est proposé pour les différents clades et espèces du genre Praomys sensu stricto. Die Stammesgeschichte des Praomys-Komplexes (Rodentia: Muridae) und deren phylogeographischen Konsequenzen Unter den Afrikanischen Murinen (Rodentia, Muridae) ergaben sich beim Komplex der Gattung Praomys, der bereits in verschiedener Weise untersucht worden war, zahlreiche taxonomische Probleme. Die verschiedenen Taxa Praomys, Mastomys, Myomys und Hylomyscus wurden entweder als verschiedene Gattungen oder als Untergattungen von Praomys angesehen. Um die Verwandtschaftsbeziehungen zwischen den Taxa des Praomys- Komplexes besser verstehen zu lernen und die Frage der Monophylie der Gattung Praomys zu testen, führten wir eine kladistische Analyse unter Verwendung morpho-anatomischer Parameter von verschiedenen Arten von Praomys, Mastomys, Myomys und Hylomyscus durch. Die Ergebnisse zeigen, daß der Praomys- Komplex monophyletisch ist, wenn man die Gattungen Mastomys, Myomys und Hylomyscus betrachtet, während die Gattung Praomys paraphyletisch zu sein scheint. Allerdings erweisen sich einige Arten, Praomys jacksoni eingeschlossen, näher verwandt zu den Gattungen Mastomys und Myomys als zur Praomys tullbergi -Gruppe. Die Biotope und die Verbreitungsgebiete der Arten wurden mit Bezug auf die Phylogenie kartiert. Es zeigt sich, daß jede der verschiedenen Kladen eine relative ökologische Zusammengehörigkeit und einen gegliederten Gradienten von geschlossenen zu offenen Habitaten erkennen läßt. Davon ausgehend wird ein evolutionstisches Szenario für die Entstehung der verschiedenen Kladen und der Arten der Gattung Praomys sensu strictu vorgeschlagen. [source] Patagial morphology of Draco volans (Reptilia: Agamidae) and the origin of glissant locomotion in flying dragonsJOURNAL OF ZOOLOGY, Issue 4 2001Anthony P. Russell Abstract The integrative patagial morphology of Draco volans was examined to elucidate the possible evolutionary pathway of origin of active patagia in the flying dragons and in extinct taxa that are thought to have possessed similarly constructed flight membranes. The area of the patagia and accessory aerodynamic surfaces is compared between Draco volans and Ptychozoon kuhli, a gekkonid with passive patagia. Comparisons of patagial area are also made between selected species of Draco. Scale architecture of the patagium of Draco is described and is related to pertinent aspects of the structure and properties of the integument. The relationships of these characteristics to the morphology of the ribs and their related musculature are emphasized. The overall assessment of these features in relation to patagial form is employed to develop an evolutionary scenario for the origin of active patagia. [source] Sampling within the genome for measuring within-population diversity: trade-offs between markersMOLECULAR ECOLOGY, Issue 7 2002S. Mariette Abstract Experimental results of diversity estimates in a set of populations often exhibit contradictory patterns when different marker systems are used. Using simulations we identified potential causes for these discrepancies. These investigations aimed also to detect whether different sampling strategies of markers within the genome resulted in different estimates of the diversity at the whole genome level. The simulations consisted in generating a set of populations undergoing various evolutionary scenarios which differed by population size, migration rate and heterogeneity of gene flow. Population diversity was then computed for the whole genome and for subsets of loci corresponding to different marker techniques. Rank correlation between the two measures of diversity were investigated under different scenarios. We showed that the heterogeneity of genetic diversity either between loci (genomic heterogeneity, GH) or among populations (population heterogeneity, PH) varied greatly according to the evolutionary scenario considered. Furthermore, GH and PH were major determinants of the level of rank correlation between estimates of genetic diversities obtained using different kinds of markers. We found a strong positive relationship between the level of the correlation and PH, whatever the marker system. It was also shown that, when GH values were constantly low during generations, a reduced number of microsatellites was enough to predict the diversity of the whole genome, whereas when GH increased, more loci were needed to predict the diversity and amplified fragment length polymorphism markers would be more recommended in this case. Finally the results are discussed to recommend strategies for gene diversity surveys. [source] SOME LESSER KNOWN FEATURES OF THE ANCIENT CEPHALOPOD ORDER ELLESMEROCERIDA (NAUTILOIDEA, CEPHALOPODA)PALAEONTOLOGY, Issue 3 2007BJÖRN KRÖGER Abstract:, Three specimens of the small breviconic ellesmeroceratid Paradakeoceras minor Flower, 1964 from the Tremadocian of the New York area preserve the annular elevation and muscle scars in moulds of the body chamber. The annular elevation is positioned at the base of the body chamber and is wider on the convex side of the shell than on the concave side. Multiple paired muscle scars can be seen within this annular elevation. A well-preserved body chamber of the breviconic ellesmeroceratid Levisoceras cf. edwardsi Ulrich, Foerste and Miller is described. Its body chamber shows a strong anterior,posterior asymmetry, which is common within the Ellesmeroceratida. The shape of the body chamber and of the soft body attachment structures has led to a reconstruction of an ellesmeroceratid soft body that is organized like a primitive conchiferan mollusc. Based on this reconstruction, a tryblidian cephalopod ancestor is supported. An evolutionary scenario is reconstructed from an ancestral nautiloid that is stretched along the anterior,posterior axis, and has serially arranged shell muscles and a small mantle cavity, towards a modern cephalopod with a dorsal,ventral body orientation, reduced number of shell muscles and a large mantle cavity. [source] Importance of colour in the reaction of passerine predators to aposematic prey: experiments with mutants of Pyrrhocoris apterus (Heteroptera)BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 1 2006ALICE EXNEROVÁ Persistent questions concerning the warning coloration of unpalatable insects address whether the bright aposematic colour itself or its combination with a species-specific dark pattern is the key factor in their protection against insectivorous birds, and how chromatic polymorphism originates and is maintained in aposematics. In the present study, these questions were tested experimentally, using the birds Parus major, Parus caeruleus, Erithacus rubecula, and Sylvia atricapilla as predators, and chromatically polymorphic firebug Pyrrhocoris apterus: red wild form, white, yellow, and orange mutants (all four of them with the same black melanin pattern, the mutants differing in colour of pteridine pigments only) and the nonaposematic brown-painted wild form as prey. The results show that a specific colour is essential for the birds to recognize the specific aposematic prey; the melanin pattern is not sufficient. White mutants were no better protected than nonaposematic firebugs; red wild-type and orange mutants were equally well protected against all bird species; and the reaction of birds to yellow mutants was species-specific. An evolutionary scenario of 'recurrent recessive mutations' is formulated to explain the origin of colour polymorphism in some aposematics. © 2006 The Linnean Society of London, Biological Journal of the Linnean Society, 2006, 88, 143,153. [source] ASSORTATIVE MATING FOR FITNESS AND THE EVOLUTION OF RECOMBINATIONEVOLUTION, Issue 7 2006Alistair Blachford Abstract To understand selection on recombination, we need to consider how linkage disequilibria develop and how recombination alters these disequilibria. Any factors that development of disequilbria, including nonrandom mating, can potentially change selectio on recombination. Assortative mating is known to affect linkage disequilbria but its effect on the evolution of recombination have not been previously studied. Given that assortative arise indirectly via a number of biologically realistic scenarios, it is plausible that weak assortative mating occurs across a diverse set of taxa. Using a modifier model, we examine how assortative mating for fitness affects the evolution of recombination under two evolutionary scenarios: selective sweeps and mutation-selection balance. We find there is no net effect of assortative mating during a selective sweep. In contrast, assortative mating could have a large effect on recombination when deleterious alleles are maintained at mutation-selection balance but only if assortative mating is sufficiently strong. Upon considering reasonable values for the number of loci affecting fitness components, the strength of selection, and the mutation rate, we conclude that the correlation in fitness between mates is unlikely to be sufficiently high for assortative mating to affect the evolution of recombination in most species. [source] THE DIFFUSIVE SPREAD OF ALLELES IN HETEROGENEOUS POPULATIONSEVOLUTION, Issue 3 2004Garrick T. Skalski Abstract The spread of genes and individuals through space in populations is relevant in many biological contexts. I study, via systems of reaction-diffusion equations, the spatial spread of advantageous alleles through structured populations. The results show that the temporally asymptotic rate of spread of an advantageous allele, a kind of invasion speed, can be approximated for a class of linear partial differential equations via a relatively simple formula, c= 2,rD, that is reminiscent of a classic formula attributed to R. A. Fisher. The parameters r and D, represent an asymptotic growth rate and an average diffusion rate, respectively, and can be interpreted in terms of eigenvalues and eigenvectors that depend on the population's demographic structure. The results can be applied, under certain conditions, to a wide class of nonlinear partial differential equations that are relevant to a variety of ecological and evolutionary scenarios in population biology. I illustrate the approach for computing invasion speed with three examples that allow for heterogeneous dispersal rates among different classes of individuals within model populations. [source] ADAPTIVE CONSTRAINTS AND THE PHYLOGENETIC COMPARATIVE METHOD: A COMPUTER SIMULATION TESTEVOLUTION, Issue 1 2002Emilia P. Martins Abstract Recently, the utility of modern phylogenetic comparative methods (PCMs) has been questioned because of the seemingly restrictive assumptions required by these methods. Although most comparative analyses involve traits thought to be undergoing natural or sexual selection, most PCMs require an assumption that the traits be evolving by less directed random processes, such as Brownian motion (BM). In this study, we use computer simulation to generate data under more realistic evolutionary scenarios and consider the statistical abilities of a variety of PCMs to estimate correlation coefficients from these data. We found that correlations estimated without taking phylogeny into account were often quite poor and never substantially better than those produced by the other tested methods. In contrast, most PCMs performed quite well even when their assumptions were violated. Felsenstein's independent contrasts (FIC) method gave the best performance in many cases, even when weak constraints had been acting throughout phenotypic evolution. When strong constraints acted in opposition to variance-generating (i.e., BM) forces, however, FIC correlation coefficients were biased in the direction of those BM forces. In most cases, all other PCMs tested (phylogenetic generalized least squares, phylogenetic mixed model, spatial autoregression, and phylogenetic eigenvector regression) yielded good statistical performance, regardless of the details of the evolutionary model used to generate the data. Actual parameter estimates given by different PCMs for each dataset, however, were occasionally very different from one another, suggesting that the choice among them should depend on the types of traits and evolutionary processes being considered. [source] DOES EVOLUTION OF ITEROPAROUS AND SEMELPAROUS REPRODUCTION CALL FOR SPATIALLY STRUCTURED SYSTEMS?EVOLUTION, Issue 1 2000Esa Ranta Abstract., A persistent question in the evolution of life histories is the fitness trade-off between reproducing only once (semelparity) in a lifetime or reproducing repeated times in different seasons (iteroparity). The problem can be formulated into a research agenda by assuming that one reproductive strategy is resident (has already evolved) and by asking whether invasion (evolution) of an alternative reproductive strategy is possible. For a spatially nonstructured system, Bulmer (1994) derived the relationship v + PA < 1 (PA is adult survival; vbs and bs are offspring numbers for iteroparous and semelparous breeding strategies, respectively) at which semelparous population cannot be invaded by an iteroparous mutant. When the inequality is changed to v + PA > 1, invasion of a semelparous mutant is not possible. From the inequalities, it is easy to see that possibilities for evolutionary establishment of a novel reproductive strategy are rather narrow. We extended the evolutionary scenario into a spatially structured system with dispersal linkage among the subunits. In this domain, a rare reproductive strategy can easily invade a population dominated by a resident reproductive strategy. The parameter space enabling invasion is far more generous with spatially structured evolutionary scenarios than in a spatially nonstructured system. [source] Cladistic analysis of Medusozoa and cnidarian evolutionINVERTEBRATE BIOLOGY, Issue 1 2004Antonio C. Marques Abstract. A cladistic analysis of 87 morphological and life history characters of medusozoan cnidarians, rooted with Anthozoa, results in the phylogenetic hypothesis (Anthozoa (Hydrozoa (Scyphozoa (Staurozoa, Cubozoa)))). Staurozoa is a new class of Cnidaria consisting of Stauromedusae and the fossil group Conulatae. Scyphozoa is redefined as including those medusozoans characterized by strobilation and ephyrae (Coronatae, Semaeostomeae, and Rhizostomeae). Within Hydrozoa, Limnomedusae is identified as either the earliest diverging hydrozoan lineage or as the basal group of either Trachylina (Actinulida (Trachymedusae (Narcomedusae, Laingiomedusae))) or Hydroidolina (Leptothecata (Siphonophorae, Anthoathecata)). Cladistic results are highly congruent with recently published phylogenetic analyses based on 18S molecular characters. We propose a phylogenetic classification of Medusozoa that is consistent with phylogenetic hypotheses based on our cladistic results, as well as those derived from 18S analyses. Optimization of the characters presented in this analysis are used to discuss evolutionary scenarios. The ancestral cnidarian probably had a sessile biradial polyp as an adult form. The medusa is inferred to be a synapomorphy of Medusozoa. However, the ancestral process (metamorphosis of the apical region of the polyp or lateral budding involving an entocodon) could not be inferred unequivocally. Similarly, character states for sense organs and nervous systems could not be inferred for the ancestral medusoid of Medusozoa. [source] Atlantic reef fish biogeography and evolutionJOURNAL OF BIOGEOGRAPHY, Issue 1 2008S. R. Floeter Abstract Aim, To understand why and when areas of endemism (provinces) of the tropical Atlantic Ocean were formed, how they relate to each other, and what processes have contributed to faunal enrichment. Location, Atlantic Ocean. Methods, The distributions of 2605 species of reef fishes were compiled for 25 areas of the Atlantic and southern Africa. Maximum-parsimony and distance analyses were employed to investigate biogeographical relationships among those areas. A collection of 26 phylogenies of various Atlantic reef fish taxa was used to assess patterns of origin and diversification relative to evolutionary scenarios based on spatio-temporal sequences of species splitting produced by geological and palaeoceanographic events. We present data on faunal (species and genera) richness, endemism patterns, diversity buildup (i.e. speciation processes), and evaluate the operation of the main biogeographical barriers and/or filters. Results, Phylogenetic (proportion of sister species) and distributional (number of shared species) patterns are generally concordant with recognized biogeographical provinces in the Atlantic. The highly uneven distribution of species in certain genera appears to be related to their origin, with highest species richness in areas with the greatest phylogenetic depth. Diversity buildup in Atlantic reef fishes involved (1) diversification within each province, (2) isolation as a result of biogeographical barriers, and (3) stochastic accretion by means of dispersal between provinces. The timing of divergence events is not concordant among taxonomic groups. The three soft (non-terrestrial) inter-regional barriers (mid-Atlantic, Amazon, and Benguela) clearly act as ,filters' by restricting dispersal but at the same time allowing occasional crossings that apparently lead to the establishment of new populations and species. Fluctuations in the effectiveness of the filters, combined with ecological differences among provinces, apparently provide a mechanism for much of the recent diversification of reef fishes in the Atlantic. Main conclusions, Our data set indicates that both historical events (e.g. Tethys closure) and relatively recent dispersal (with or without further speciation) have had a strong influence on Atlantic tropical marine biodiversity and have contributed to the biogeographical patterns we observe today; however, examples of the latter process outnumber those of the former. [source] Chordate phylogeny and evolution: a not so simple three-taxon problemJOURNAL OF ZOOLOGY, Issue 2 2008T. Stach Abstract Traditional concepts of chordate phylogeny have recently been in turmoil: in a large-scale molecular study, the traditional hypothesis that cephalochordates are sister taxon to craniates was replaced by the hypothesis of a sister group relationship between tunicates and craniates. It was claimed that the morphological evidence that supported traditional phylogeny was weak and that morphological characters at least equally strong could be mustered in support of the ,new phylogeny.' In the present review, it is shown that the uncritical use of published codings of morphological characters in recent phylogenetic analyses is responsible for this perception. To ameliorate this situation, the main focus of the present publication is a review of the morphological evidence that has been deemed relevant in chordate phylogeny. Characters are presented in enough detail to allow readers to make self-reliant informed decisions on character coding. I then analyze these characters cladistically, and it is demonstrated that support of the traditional hypothesis is substantial. I briefly evaluate molecular systematic studies and criticize ,evo-devo' studies for lack of cladistic rigor in the evolutionary interpretations of their data by (1) failing to formally code their characters (2) failing to subject their data to the congruence test with other characters, the crucial test in phylogenetic analyses. Finally, a short and by necessity eclectic discussion of suggested evolutionary scenarios is presented. [source] Sampling within the genome for measuring within-population diversity: trade-offs between markersMOLECULAR ECOLOGY, Issue 7 2002S. Mariette Abstract Experimental results of diversity estimates in a set of populations often exhibit contradictory patterns when different marker systems are used. Using simulations we identified potential causes for these discrepancies. These investigations aimed also to detect whether different sampling strategies of markers within the genome resulted in different estimates of the diversity at the whole genome level. The simulations consisted in generating a set of populations undergoing various evolutionary scenarios which differed by population size, migration rate and heterogeneity of gene flow. Population diversity was then computed for the whole genome and for subsets of loci corresponding to different marker techniques. Rank correlation between the two measures of diversity were investigated under different scenarios. We showed that the heterogeneity of genetic diversity either between loci (genomic heterogeneity, GH) or among populations (population heterogeneity, PH) varied greatly according to the evolutionary scenario considered. Furthermore, GH and PH were major determinants of the level of rank correlation between estimates of genetic diversities obtained using different kinds of markers. We found a strong positive relationship between the level of the correlation and PH, whatever the marker system. It was also shown that, when GH values were constantly low during generations, a reduced number of microsatellites was enough to predict the diversity of the whole genome, whereas when GH increased, more loci were needed to predict the diversity and amplified fragment length polymorphism markers would be more recommended in this case. Finally the results are discussed to recommend strategies for gene diversity surveys. [source] The properties of the stellar populations in ULIRGs , I. Sample, data and spectral synthesis modellingMONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, Issue 3 2009J. Rodríguez Zaurín ABSTRACT We present deep long-slit optical spectra for a sample of 36 ultraluminous infrared galaxies (ULIRGs), taken with the William Herschel Telescope on La Palma with the aim of investigating the star formation histories and testing evolutionary scenarios for such objects. Here we present the sample, the analysis techniques and a general overview of the properties of the stellar populations; a more detailed discussion will be presented in a forthcoming paper. Spectral synthesis modelling has been used in order to estimate the ages of the stellar populations found in the diffuse light sampled by the spectra in both the nuclear and extended regions of the target galaxies. We find that adequate fits can be obtained using combinations of young stellar populations (YSPs; tYSP, 2 Gyr), with ages divided into two groups: very young stellar populations (VYSPs; tVYSP, 100 Myr) and intermediate-young stellar populations (IYSPs; 0.1 < tIYSP, 2 Gyr). Our results show that YSPs are present at all locations of the galaxies covered by our slit positions, with the exception of the northern nuclear region of the ULIRG IRAS 23327+2913. Furthermore, VYSPs are present in at least 85 per cent of the 133 extraction apertures used for this study, being more significant in the nuclear regions of the galaxies. Old stellar populations (OSPs; tOSP > 2 Gyr) do not make a major contribution to the optical light in the majority of the apertures extracted. In fact they are essential for fitting the spectra in only 5 per cent (seven) of the extracted apertures. The estimated total masses for the YSPs (VYSPs + IYSPs) are in the range 0.18 × 1010,MYSP, 50 × 1010 M,. We have also estimated the bolometric luminosities associated with the stellar populations detected at optical wavelengths, finding that they fall in the range 0.07 × 1012 < Lbol < 2.2 × 1012 L,. In addition, we find that reddening is significant at all locations in the galaxies. This result emphasizes the importance of accounting for reddening effects when modelling the stellar populations of star-forming galaxies. [source] Genetic continuity after the collapse of the Wari empire: Mitochondrial DNA profiles from Wari and post-Wari populations in the ancient AndesAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 1 2009Brian M. Kemp Abstract The Wari empire flourished in the central, highland Peruvian Andes from AD 600,1000, and although the events that led to its demise are unknown, archaeological evidence indicates that Wari control waned at the end of the first millennium. Here, we test the hypothesis that, despite the major shift in social and political organization at the fall of the Wari empire, the mitochondrial DNA (mtDNA) composition of populations from the Ayacucho Basin, the former imperial heartland of the empire, remained essentially unchanged. Results show that mtDNA haplogroup frequencies among the Wari and post-Wari groups differ, but the difference is not statistically significant (,2 = 5.886, df = 3, P = 0.1172). This is the first study in the Andes to use haplotypic data to evaluate the observed genetic distance between two temporally distinct prehispanic populations (FST = 0.029) against modeled expectations of four possible evolutionary scenarios. None of these simulations allowed the rejection of continuity. In total, at both the haplogroup and haplotype levels these data do not allow us to reject the hypothesis that post-Wari individuals sampled in this study are the maternal descendants of those sampled from the Wari era site of Conchopata. However, genetic homogeneity in the mitochondrial gene pool, as seen in the late prehispanic southern Andes, may also characterize our study region. But, prior to this research, this was unknown. If our new data show mtDNA homogeneity, then this could limit the detection of female migration if, in fact, it occurred. Nonetheless, the novel mtDNA data presented here currently do not support the hypothesis that there was an influx of genetically distinct females into the former Wari heartland after the Wari collapse. Am J Phys Anthropol, 2009. © 2009 Wiley-Liss, Inc. [source] Hagfish embryos again,the end of a long droughtBIOESSAYS, Issue 9 2007Nicholas D. Holland Hagfishes have long held a key place in discussions of early vertebrate evolution. Frustratingly, one basis for such discussions,namely hagfish embryology,is very incompletely known, because the embryos of these animals are notoriously difficult to obtain.1,2 Fortunately, a recent publication on a Far Eastern hagfish3 describes a workable procedure for obtaining embryos and then uses this precious material to show that the hagfish neural crest arises by cell delamination as in other vertebrates,and not by epithelial outpouchings from the wall of the neural tube as previously claimed.4 Importantly, because hagfish embryos should now be available on a regular basis, the way is open for additional morphological and developmental genetic investigations to help evaluate existing evolutionary scenarios and perhaps suggest new ones. BioEssays 29:833,836, 2007. © 2007 Wiley Periodicals, Inc. [source] | |||||||||||||||||||||||||