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Evolutionary
Terms modified by Evolutionary Selected AbstractsINTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCIEVOLUTION, Issue 9 2010Jay F. Storz Inferences about adaptation at specific loci are often exclusively based on the static analysis of DNA sequence variation. Ideally, population-genetic evidence for positive selection serves as a stepping-off point for experimental studies to elucidate the functional significance of the putatively adaptive variation. We argue that inferences about adaptation at specific loci are best achieved by integrating the indirect, retrospective insights provided by population-genetic analyses with the more direct, mechanistic insights provided by functional experiments. Integrative studies of adaptive genetic variation may sometimes be motivated by experimental insights into molecular function, which then provide the impetus to perform population genetic tests to evaluate whether the functional variation is of adaptive significance. In other cases, studies may be initiated by genome scans of DNA variation to identify candidate loci for recent adaptation. Results of such analyses can then motivate experimental efforts to test whether the identified candidate loci do in fact contribute to functional variation in some fitness-related phenotype. Functional studies can provide corroborative evidence for positive selection at particular loci, and can potentially reveal specific molecular mechanisms of adaptation. [source] SOCIALITY IN THERIDIID SPIDERS: REPEATED ORIGINS OF AN EVOLUTIONARY DEAD ENDEVOLUTION, Issue 11 2006Ingi Agnarsson Abstract Evolutionary ,dead ends' result from traits that are selectively advantageous in the short term but ultimately result in lowered diversification rates of lineages. In spiders, 23 species scattered across eight families share a social system in which individuals live in colonies and cooperate in nest maintenance, prey capture, and brood care. Most of these species are inbred and have highly female-biased sex ratios. Here we show that in Theridiidae this social system originated eight to nine times independently among 11 to 12 species for a remarkable 18 to 19 origins across spiders. In Theridiidae, the origins cluster significantly in one clade marked by a possible preadaptation: extended maternal care. In most derivations, sociality is limited to isolated species: social species are sister to social species only thrice. To examine whether sociality in spiders represents an evolutionary dead end, we develop a test that compares the observed phylogenetic isolation of social species to the simulated evolution of social and non-social clades under equal diversification rates, and find that sociality in Theridiidae is significantly isolated. Because social clades are not in general smaller than their nonsocial sister clades, the spindly phylogenetic pattern,many tiny replicate social clades,may be explained by extinction rapid enough that a nonsocial sister group does not have time to diversify while the social lineage remains extant. In this case, this repeated origin and extinction of sociality suggests a conflict between the short-term benefits and long-term costs of inbred sociality. Although benefits of group living may initially outweigh costs of inbreeding (hence the replicate origins), in the long run the subdivision of the populations in relatively small and highly inbred colony lineages may result in higher extinction, thus an evolutionary dead end. [source] Evolutionary and functional analysis of the tailless enhancer in Musca domestica and Drosophila melanogasterEVOLUTION AND DEVELOPMENT, Issue 1 2006Naomi S. Wratten SUMMARY To further understand the evolutionary dynamics of the regulatory interactions underlying development, we expand on our previous analysis of hunchback and compare the structure and function of the tailless enhancer between Musca domestica and Drosophila melanogaster. Our analysis shows that although the expression patterns and functional protein domains of tll are conserved between Musca and Drosophila, the enhancer sequences are unalignable. Upon closer investigation, we find that these highly diverged enhancer sequences encode the same regulatory information necessary for Bicoid, Dorsal, and the terminal system to drive tll expression. The binding sites for these transcription factors differ in the sequence, number, spacing, and position between the Drosophila and Musca tll enhancers, and we were unable to establish homology between binding sites from each species. This implies that the Musca and Drosophila Bcd-binding sites have evolved de novo in the 100 million years since these species diverged. However, in transgenic Drosophila embryos the Musca tll enhancer is able to drive the same expression pattern as endogenous Drosophila tll. Therefore, during the rapid evolution of enhancer sequences individual binding sites are continually lost and gained, but the transcriptional output is maintained by compensatory mutations in cis and in trans. [source] Adaptation, extinction and global changeEVOLUTIONARY APPLICATIONS (ELECTRONIC), Issue 1 2008Graham Bell Abstract We discuss three interlinked issues: the natural pace of environmental change and adaptation, the likelihood that a population will adapt to a potentially lethal change, and adaptation to elevated CO2, the prime mover of global change. 1.,Environmental variability is governed by power laws showing that ln difference in conditions increases with ln elapsed time at a rate of 0.3,0.4. This leads to strong but fluctuating selection in many natural populations. 2.,The effect of repeated adverse change on mean fitness depends on its frequency rather than its severity. If the depression of mean fitness leads to population decline, however, severe stress may cause extinction. Evolutionary rescue from extinction requires abundant genetic variation or a high mutation supply rate, and thus a large population size. Although natural populations can sustain quite intense selection, they often fail to adapt to anthropogenic stresses such as pollution and acidification and instead become extinct. 3.,Experimental selection lines of algae show no specific adaptation to elevated CO2, but instead lose their carbon-concentrating mechanism through mutational degradation. This is likely to reduce the effectiveness of the oceanic carbon pump. Elevated CO2 is also likely to lead to changes in phytoplankton community composition, although it is not yet clear what these will be. We emphasize the importance of experimental evolution in understanding and predicting the biological response to global change. This will be one of the main tasks of evolutionary biologists in the coming decade. [source] Evolutionary-based grouping of haplotypes in association analysisGENETIC EPIDEMIOLOGY, Issue 3 2005Jung-Ying Tzeng Abstract Haplotypes incorporate more information about the underlying polymorphisms than do genotypes for individual SNPs, and are considered as a more informative format of data in association analysis. To model haplotypes requires high degrees of freedom, which could decrease power and limit a model's capacity to incorporate other complex effects, such as gene-gene interactions. Even within haplotype blocks, high degrees of freedom are still a concern unless one chooses to discard rare haplotypes. To increase the efficiency and power of haplotype analysis, we adapt the evolutionary concepts of cladistic analyses and propose a grouping algorithm to cluster rare haplotypes to the corresponding ancestral haplotypes. The algorithm determines the cluster bases by preserving common haplotypes using a criterion built on the Shannon information content. Each haplotype is then assigned to its appropriate clusters probabilistically according to the cladistic relationship. Through this algorithm, we perform association analysis based on groups of haplotypes. Simulation results indicate power increases for performing tests on the haplotype clusters when compared to tests using original haplotypes or the truncated haplotype distribution. Genet. Epidemiol. © 2005 Wiley-Liss, Inc. [source] Evolutionary and comparative anatomical investigations of the autonomic cardiac nervous system in the African cercopithecidaeJOURNAL OF MORPHOLOGY, Issue 9 2007Tomokazu Kawashima Abstract The purpose of this study was to clarify the general architecture and morphological variations of the autonomic cardiac nervous system (ACNS) in the African Cercopithecidae (Old World monkeys), and to discuss the evolutionary changes between this system in African/Asian Cercopithecidae and humans. A detailed macroscopic comparative morphological investigation of the ACNS was performed by examining the left and right sides of 11 African cercopithecid specimens, including some previously unreported species (Abyssinian colobus, Angola pied colobus, Savanna monkey, and lesser white-nosed guenon). The common characteristics of the ACNS in the African Cercopithecidae are described in detail. Consequently, homologies of the ACNS between Asian (macaques) and African Cercopithecidae, and differences between the Asian/African Cercopithecidae and humans, were found. In particular, differences in the sympathetic (cardiac) systems of the Cercopithecidae and humans were recognized, despite the similar morphology of the parasympathetic vagal (cardiac) system. These differences include the composition of the cervicothoracic ganglion, the lower positions of the middle cervical and cervicothoracic ganglia, and the narrow range for the origin of the cardiac nerves in the Cercopithecidae, compared with that in humans. In conclusion, these findings are considered with regard to the morphology of the last common ancestors of the Cercopithecidae. J. Morphol., 2007 © 2007 Wiley-Liss, Inc. [source] Evolutionary, behavioural and molecular ecology must meet to achieve long-term conservation goalsMOLECULAR ECOLOGY, Issue 18 2009J. SCOTT KEOGH Founder populations in reintroduction programmes can experience a genetic bottleneck simply because of their small size. The influence of reproductive skew brought on by polygynous or polyandrous mating systems in these populations can exacerbate already difficult conservation genetic problems, such as inbreeding depression and loss of adaptive potential. Without an understanding of reproductive skew in a target species, and the effect it can have on genetic diversity retained over generations, long-term conservation goals will be compromised. In this issue of Molecular Ecology, Miller et al. (2009a) test how founder group size and variance in male reproductive success influence the maintenance of genetic diversity following reintroduction on a long-term scale. They evaluated genetic diversity in two wild populations of the iconic New Zealand tuatara (Fig. 1), which differ greatly in population size and genetic diversity, and compared this to genetic diversity in multiple founder populations sourced from both populations. Population viability analysis on the maintenance of genetic diversity over 400 years (10 generations) demonstrated that while the loss of heterozygosity was low when compared with both source populations (1,14%), the greater the male reproductive skew, the greater the predicted losses of genetic diversity. Importantly however, the loss of genetic diversity was ameliorated after population size exceeded 250 animals, regardless of the level of reproductive skew. This study demonstrates that highly informed conservation decisions could be made when you build on a solid foundation of demographic, natural history and behavioural ecology data. These data, when informed by modern population and genetic analysis, mean that fundamental applied conservation questions (how many animals should make up a founder population?) can be answered accurately and with an eye to the long-term consequences of management decisions. Figure 1. ,Large adult male tuatara attacking a smaller male. Photo by Jeanine Refsnider. [source] Comments on: Evolutionary and statistical properties of three genetic distances (Kalinowski, 2002)MOLECULAR ECOLOGY, Issue 8 2003Jürgen Tomiuk No abstract is available for this article. [source] Evolutionary and statistical properties of three genetic distancesMOLECULAR ECOLOGY, Issue 8 2002Steven T. Kalinowski Abstract Many genetic distances have been developed to summarize allele frequency differences between populations. I review the evolutionary and statistical properties of three popular genetic distances: DS, DA, and ,, using computer simulation of two simple evolutionary histories: an isolation model of population divergence and an equilibrium migration model. The effect of effective population size, mutation rate, and mutation mechanism upon the parametric value between pairs of populations in these models explored, and the unique properties of each distance are described. The effect of these evolutionary parameters on study design is also investigated and similar results are found for each genetic distance in each model of evolution: large sample sizes are warranted when populations are relatively genetically similar; and loci with more alleles produce better estimates of genetic distance. [source] Transcription factor families inferred from genome sequences of photosynthetic stramenopilesNEW PHYTOLOGIST, Issue 1 2010Edda Rayko Summary ,By comparative analyses we identify lineage-specific diversity in transcription factors (TFs) from stramenopile (or heterokont) genome sequences. We compared a pennate (Phaeodactylum tricornutum) and a centric diatom (Thalassiosira pseudonana) with those of other stramenopiles (oomycetes, Pelagophyceae, and Phaeophyceae (Ectocarpus siliculosus)) as well as to that of Emiliania huxleyi, a haptophyte that is evolutionarily related to the stramenopiles. ,We provide a detailed description of diatom TF complements and report numerous peculiarities: in both diatoms, the heat shock factor (HSF) family is overamplified and constitutes the most abundant class of TFs; Myb and C2H2-type zinc finger TFs are the two most abundant TF families encoded in all the other stramenopile genomes investigated; the presence of diatom and lineage-specific gene fusions, in particular a class of putative photoreceptors with light-sensitive Per-Arnt-Sim (PAS) and DNA-binding (basic-leucine zipper, bZIP) domains and an HSF-AP2 domain fusion. ,Expression data analysis shows that many of the TFs studied are transcribed and may be involved in specific responses to environmental stimuli. ,Evolutionary and functional relevance of these observations are discussed. [source] Leading Change in Local Government: The Tension between Evolutionary and Frame,breaking Reform in NSWAUSTRALIAN JOURNAL OF PUBLIC ADMINISTRATION, Issue 3 2002Robert Jones As a result of changing legislation the role of general managers in Australian local government is being transformed from administrative compliance to proactive managerial direction. They are expected to possess leadership, visionary and other change management skills not previously exercised in local government. This paper analyses how the general managers of four councils in Sydney have attempted to lead their respective organisations through their reform agendas. The four councils represented two comparison groups at each extreme of a change continuum ranging from evolutionary to frame,breaking change. Data collected from the four councils since 1994 used personal interviews, participant observation and analysis of documentation. The paper tracks the evolutionary and framebreaking reform, paying particular attention to the role, personality and leadership styles of the general managers. Emergent themes are identified and analysed as they relate to the impact of the general manager on the type of reform processes adopted. [source] Evolutionary and ecological implications of genome size in the North American endemic sagebrushes and allies (Artemisia, Asteraceae)BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 3 2008SÒNIA GARCIA The genome size of 51 populations of 20 species of the North American endemic sagebrushes (subgenus Tridentatae), related species, and some hybrid taxa were assessed by flow cytometry, and were analysed in a phylogenetic framework. Results were similar for most Tridentatae species, with the exception of three taxonomically conflictive species: Artemisia bigelovii Gray, Artemisia pygmaea Gray, and Artemisia rigida Gray. Genome size homogeneity (together with the high morphological, chemical, and karyological affinities, as well as low DNA sequence divergence) could support a recent diversification process in this geographically restricted group, thought to be built upon a reticulate evolutionary framework. The Tridentatae and the other North American endemic Artemisia show a significantly higher genome size compared with the other subgenera. Our comparative analyses including genome size results, together with different kinds of ecological and morphological traits, suggest an evolutionary change in lifestyle strategy linked to genome expansion, in which junk or selfish DNA accumulation might be involved. Conversely, weed or invasive behaviour in Artemisia is coupled with lower genome sizes. Data for both homoploid and polyploid hybrids were also assessed. Genome sizes are close to the expected mean of parental species for homoploid hybrids, but are lower than expected in the allopolyploids, a phenomenon previously documented to be related with polyploidy. © 2008 The Linnean Society of London, Biological Journal of the Linnean Society, 2008, 94, 631,649. [source] A new model organism among the lower Bilateria and the use of digital microscopy in taxonomy of meiobenthic Platyhelminthes: Macrostomum lignano, n. sp. (Rhabditophora, Macrostomorpha)JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 2 2005P. Ladurner Abstract Macrostomum lignano n. sp. is a member of the Macrostomorpha, the basal-most subtaxon of the Platyhelminthes,Rhabditophora. This new species can be easily cultured in the laboratory and has been already the subject of several developmental/evolutionary studies. The small size, with only about 25 000 cells constituting the major bilaterian organ systems, makes this simultaneous hermaphrodite a possible candidate for a new model organism that is phylogenetically more basal than any of the model organisms currently used in such studies within the Bilateria. M. lignano belongs to the largest genus of the Macrostomorpha. Over 100 marine, fresh water and brackish water species are contained in the genus Macrostomum, some of them with worldwide distribution pattern. Within it, M. lignano is a member of the M. tuba -species group, which we have summarized here. In the species description, we have used a novel approach to document such small soft-bodied meiobenthic organisms: we provide extensive digital micrographical documentation, which are deposited as a CD together with the type material. Zusammenfassung Macrostomum lignano n. sp. gehört zu den Macrostomorpha, dem ursprünglichsten Subtaxon der Plathelminthes-Rhabditophora. An der neuen Art, die sich im Labor besonders einfach züchten lässt, wurden bereits zahlreiche entwicklungsbiologische und evolutionsbiologische Studien durchgeführt. Die kleinen simultan-hermaphroditischen Tiere, bei denen nur etwa 25'000 Zellen alle wichtigen Organsysteme der Bilateria ausbilden, sind für derartige Untersuchungen ein möglicher Modellorganismus, der phylogenetisch weit ursprünglicher ist als die üblichen Modellorganismen. Macrostomum ist die größte Gattung der Macrostomorpha. Sie umfasst mehr als 100 Meer-, Süss- und Brackwasser-Arten, einige davon mit weltweiter Verbreitung. Innerhalb der Gattung ist M. lignano der M. tuba -Artengruppe zuzurechnen, die zusammenfassend dargestellt wird. Zur Charakterisierung dieser meiobenthischen neuen Art wird als neuartige Dokumentationsform digitales Bildmaterial verwendet, das als CD zusammen mit dem Typenmaterial hinterlegt wird. [source] Comparison of Two Evolutionary Algorithms for Optimization of Bridge Deck RepairsCOMPUTER-AIDED CIVIL AND INFRASTRUCTURE ENGINEERING, Issue 8 2006Hatem Elbehairy These decisions, however, represent complex optimization problems that traditional optimization techniques are often unable to solve. This article introduces an integrated model for bridge deck repairs with detailed life cycle costs of network-level and project-level decisions. Two evolutionary-based optimization techniques that are capable of handling large-size problems, namely Genetic Algorithms and Shuffled Frog Leaping, are then applied on the model to optimize maintenance and repair decisions. Results of both techniques are compared on case study problems with different numbers of bridges. Based on the results, the benefits of the bridge deck management system are illustrated along with various strategies to improve optimization performance. [source] Comparative and developmental study of the immune system in XenopusDEVELOPMENTAL DYNAMICS, Issue 6 2009Jacques Robert Abstract Xenopus laevis is the model of choice for evolutionary, comparative, and developmental studies of immunity, and invaluable research tools including MHC-defined clones, inbred strains, cell lines, and monoclonal antibodies are available for these studies. Recent efforts to use Silurana (Xenopus) tropicalis for genetic analyses have led to the sequencing of the whole genome. Ongoing genome mapping and mutagenesis studies will provide a new dimension to the study of immunity. Here we review what is known about the immune system of X. laevis integrated with available genomic information from S. tropicalis. This review provides compelling evidence for the high degree of similarity and evolutionary conservation between Xenopus and mammalian immune systems. We propose to build a powerful and innovative comparative biomedical model based on modern genetic technologies that takes take advantage of X. laevis and S. tropicalis, as well as the whole Xenopus genus. Developmental Dynamics 238:1249,1270, 2009. © 2009 Wiley-Liss, Inc. [source] Recent advances in craniofacial morphogenesisDEVELOPMENTAL DYNAMICS, Issue 9 2006Yang Chai Abstract Craniofacial malformations are involved in three fourths of all congenital birth defects in humans, affecting the development of head, face, or neck. Tremendous progress in the study of craniofacial development has been made that places this field at the forefront of biomedical research. A concerted effort among evolutionary and developmental biologists, human geneticists, and tissue engineers has revealed important information on the molecular mechanisms that are crucial for the patterning and formation of craniofacial structures. Here, we highlight recent advances in our understanding of evo,devo as it relates to craniofacial morphogenesis, fate determination of cranial neural crest cells, and specific signaling pathways in regulating tissue,tissue interactions during patterning of craniofacial apparatus and the morphogenesis of tooth, mandible, and palate. Together, these findings will be beneficial for the understanding, treatment, and prevention of human congenital malformations and establish the foundation for craniofacial tissue regeneration. Developmental Dynamics 235:2353,2375, 2006. © 2006 Wiley-Liss, Inc. [source] A new dimension in combining data?ACTA ZOOLOGICA, Issue 1 2010The use of morphology, phylogenomic data in metazoan systematics Abstract Giribet, G. 2010. A new dimension in combining data? The use of morphology and phylogenomic data in metazoan systematics. ,Acta Zoologica (Stockholm) 91: 11,19 Animal phylogenies have been traditionally inferred by using the character state information derived from the observation of a diverse array of morphological and anatomical features, but the incorporation of molecular data into the toolkit of phylogenetic characters has shifted drastically the way researchers infer phylogenies. A main reason for this is the ease at which molecular data can be obtained, compared to, e.g., traditional histological and microscopical techniques. Researchers now routinely use genomic data for reconstructing relationships among animal phyla (using whole genomes or Expressed Sequence Tags) but the amount of morphological data available to study the same phylogenetic patterns has not grown accordingly. Given the disparity between the amounts of molecular and morphological data, some authors have questioned entire morphological programs. In this review I discuss issues related to the combinability of genomic and morphological data, the informativeness of each set of characters, and conclude with a discussion of how morphology could be made scalable by utilizing new techniques that allow for non-intrusive examination of large amounts of preserved museum specimens. Morphology should therefore remains a strong field in evolutionary and comparative biology, as it continues to provide information for inferring phylogenetic patterns, is an important complement for the patterns derived from the molecular data, and it is the common nexus that allows studying fossil taxa with large data sets of molecular data. [source] Range size, taxon age and hotspots of neoendemism in the California floraDIVERSITY AND DISTRIBUTIONS, Issue 3 2010Nathan J. B. Kraft Abstract Aim, Sustaining biological diversity requires the protection of the ecological, evolutionary and landscape-level processes that generate it. Here, we identify areas of high neoendemism in a global diversity hotspot, the California flora, using range size data and molecular-based estimates of taxon age. Location, California, USA. Methods, We compiled distribution and range size data for all plant taxa endemic to California and internal transcribed spacer (ITS)-based age estimates for 337 putative neoendemics (15% of the endemic flora). This information was combined to identify areas in the state with high proportions of young and restricted-range taxa. We overlaid the distribution of neoendemic hotspots on maps of currently protected lands and also explored correlations between our diversity measures and climate. Results, The central coast of California, the Sierra Nevada and the San Bernardino Range contained endemics with the most restricted distributions on average, while areas in the Desert and Great Basin provinces found within the state were composed of the youngest neoendemics on average. Diversity measures that took age and range size into account shifted the estimate of highest endemic diversity in the state towards the Desert and Great Basin regions relative to simple counts of endemic species richness. Our diversity measures were poorly correlated with climate and topographic heterogeneity. Main conclusions, Substantial portions of California with high levels of plant neoendemism fall outside of protected lands, indicating that additional action will be needed to preserve the geographic areas apparently associated with high rates of plant diversification. The neoendemic flora of the deserts appears particularly young in our analyses, which may reflect the relatively recent origin of desert environments within the state. [source] Why are ferns regularly over-represented on state and provincial rare plant lists?DIVERSITY AND DISTRIBUTIONS, Issue 6 2006Matthew Wild ABSTRACT Several recent studies have suggested that rare species are not randomly distributed throughout plant taxa. This would appear to apply to North American ferns, which are frequently over-represented on local lists of rare plant species. However, such lists often paint a skewed portrait of the true situation because of our tendency to recognize the rarity of well-known and charismatic species while ignoring that of lesser-known or less-appreciated species. In order to verify if this over-representation of ferns is a real and consistent trend throughout local floras in North America, we used data from what we consider to be the most complete and objective available database: NatureServe Explorer (http://www.natureserve.org/explorer/). We compiled data on total vascular plant species, total fern species, as well as rare vascular plant species and rare fern species for each North American subnational (Canadian province or US state) flora. Rare species were defined as those belonging to one of NatureServe's ,at risk' categories. The null hypothesis that the contribution of rare ferns to total rare species did not differ from their contribution to the total vascular flora was assessed using ,2. Out of 64 subnational floras, we obtained significantly higher values than expected in 28 cases, and significantly lower in only one case. Similar trends hold true for individual fern families. These tendencies could be related to several factors of anthropogenic, biological, climatological, evolutionary, and geographical origin. However, we believe that the main reason is related to scale, namely the geopolitical units at which rarity is often studied. Our results illustrate one of the problems of a parochial approach to conservation, where the perceived rarity of an entire taxon is exaggerated because of the scale at which rarity is addressed. [source] Global use of alcohol, drugs and tobaccoDRUG AND ALCOHOL REVIEW, Issue 6 2006PETER ANDERSON Abstract Humans have always used drugs, probably as part of their evolutionary and nutritional heritage. However, this previous biological adaptation is unlikely to be so in the modern world, in which 2 billion adults (48% of the adult population) are current users of alcohol, 1.1 billion adults (29% of the adult population) are current smokers of cigarettes and 185 million adults (4.5% of the adult population) are current users of illicit drugs. The use of drugs is determined largely by market forces, with increases in affordability and availability increasing use. People with socio-economic deprivation, however measured, are at increased risk of harmful drug use, as are those with a disadvantaged family environment, and those who live in a community with higher levels of substance use. Substance use is on the increase in low-income countries which, in the coming decades, will bear a disproportionate burden of substance-related disability and premature death. [source] Ground motion duration effects on nonlinear seismic responseEARTHQUAKE ENGINEERING AND STRUCTURAL DYNAMICS, Issue 1 2006Iunio Iervolino Abstract The study presented in this paper addresses the question of which nonlinear demand measures are sensitive to ground motion duration by statistical analyses of several case studies. A number of single degree of freedom (SDOF) structures were selected considering: (1) four oscillation periods; (2) three evolutionary and non-evolutionary hysteretic behaviours; (3) two target ductility levels. Effects of duration are investigated, by nonlinear dynamic analysis, with respect to six different demand indices ranging from displacement ductility ratio to equivalent number of cycles. Input is made of six real accelerogram sets representing three specific duration scenarios (small, moderate and large duration). For all considered demand quantities time-history results are formally compared by statistical hypothesis test to asses the difference, if any, in the demand concerning different scenarios. Incremental dynamic analysis curves are used to evaluate duration effect as function of ground motion intensity (e.g. spectral acceleration corresponding to the SDOF's oscillation period). Duration impact on structural failure probability is evaluated by fragility curves. The results lead to the conclusion that duration content of ground motion is statistically insignificant to displacement ductility and cyclic ductility demand. The conclusions hold regardless of SDOF's period and hysteretic relationship investigated. Copyright © 2005 John Wiley & Sons, Ltd. [source] Integrating physiological, ecological and evolutionary change: a Price equation approachECOLOGY LETTERS, Issue 8 2009Sinéad Collins Abstract We use a general quantitative framework , the Price equation , to partition phenotypic responses to environmental change into separate physiological, evolutionary and ecological components. We demonstrate how these responses, which potentially occur over different timescales and are usually studied in isolation, can be combined in an additive way; and we discuss the main advantages of doing this. We illustrate our approach using two worked examples, concerning the emergence of toxin resistance within microbial communities, and the estimation of carbon uptake by marine phytoplankton in high-CO2 environments. We find that this approach allows us to exclude particular mechanistic hypotheses with regard to community-level transformations, and to identify specific instances where appropriate data are lacking. Thus Price's equation provides not only a powerful conceptual aid, but also a means for testing hypotheses and for directing empirical research programmes. [source] The merging of community ecology and phylogenetic biologyECOLOGY LETTERS, Issue 7 2009Jeannine Cavender-Bares Abstract The increasing availability of phylogenetic data, computing power and informatics tools has facilitated a rapid expansion of studies that apply phylogenetic data and methods to community ecology. Several key areas are reviewed in which phylogenetic information helps to resolve long-standing controversies in community ecology, challenges previous assumptions, and opens new areas of investigation. In particular, studies in phylogenetic community ecology have helped to reveal the multitude of processes driving community assembly and have demonstrated the importance of evolution in the assembly process. Phylogenetic approaches have also increased understanding of the consequences of community interactions for speciation, adaptation and extinction. Finally, phylogenetic community structure and composition holds promise for predicting ecosystem processes and impacts of global change. Major challenges to advancing these areas remain. In particular, determining the extent to which ecologically relevant traits are phylogenetically conserved or convergent, and over what temporal scale, is critical to understanding the causes of community phylogenetic structure and its evolutionary and ecosystem consequences. Harnessing phylogenetic information to understand and forecast changes in diversity and dynamics of communities is a critical step in managing and restoring the Earth's biota in a time of rapid global change. [source] The tri-trophic niche concept and adaptive radiation of phytophagous insectsECOLOGY LETTERS, Issue 12 2005Michael S. Singer Abstract A conceptual divide exists between ecological and evolutionary approaches to understanding adaptive radiation, although the phenomenon is inherently both ecological and evolutionary. This divide is evident in studies of phytophagous insects, a highly diverse group that has been frequently investigated with the implicit or explicit goal of understanding its diversity. Whereas ecological studies of phytophagous insects increasingly recognize the importance of tri-trophic interactions as determinants of niche dimensions such as host-plant associations, evolutionary studies typically neglect the third trophic level. Here we attempt to reconcile ecological and evolutionary approaches through the concept of the ecological niche. We specifically present a tri-trophic niche concept as a foil to the traditional bi-trophic niche concept for phytophagous insects. We argue that these niche concepts have different implications for understanding herbivore community structure, population divergence, and evolutionary diversification. To this end, we offer contrasting empirical predictions of bi- and tri-trophic niche concepts for patterns of community structure, the process of population divergence, and patterns of evolutionary diversification of phytophagous insects. [source] Ecological perspectives on the sequenced genome collectionECOLOGY LETTERS, Issue 12 2005Jennifer B. Hughes Martiny Abstract Our complete genome collection is one of our most valuable biological resources. A key challenge for the future is the interpretation of these genomes from an ecological perspective. In this review, we discuss current work at this increasingly important interface. In particular, we review ongoing work aimed at developing high quality data sets that combine ecological, environmental, evolutionary and genomic information. Such data will help to identify biases in the sequence collection and facilitate future discoveries about the nature of ecological adaptation at the genome level. These efforts will be greatly enhanced by the contributions of ecologists. [source] A novel genealogical approach to neutral biodiversity theoryECOLOGY LETTERS, Issue 3 2004Rampal S. Etienne Abstract Current neutral theory in community ecology views local biodiversity as a result of the interplay between speciation, extinction and immigration. Simulations and a mean-field approximation have been used to study this neutral theory. As simulations have limitations of convergence and the mean-field approximation ignores dependencies between species' abundances when applied to species-abundance data, there is still no final conclusion whether the neutral theory or the traditional lognormal model describes community structure best. We present a novel analytical framework, based on the genealogy of individuals in the local community, to overcome the problems of previous approaches, and show, using Bayesian statistics, that the lognormal model provides a slightly better fit to the species-abundance distribution of a much-discussed tropical tree community. A key feature of our approach is that it shows the tight link between genetic and species diversity, which creates important perspectives to future integration of evolutionary and community ecological theory. [source] Some Notes on Institutions in Evolutionary Economic GeographyECONOMIC GEOGRAPHY, Issue 2 2009Ron Boschma abstract Within the evolutionary economic geography framework, the role of institutions deserves more explicit attention. We argue that territorial institutions are to be viewed as orthogonal to organizational routines since each territory is characterized by a variety of routines and a single firm can apply its routines in different territorial contexts. It is therefore meaningful to distinguish between institutional economic geography and evolutionary economic geography as their explanans is different. Yet the two approaches can be combined in a dynamic framework in which institutions coevolve with organizational routines, particularly in emerging industries. Furthermore, integrating the evolutionary and institutional approach allows one to analyze the spatial diffusion of organizational routines that mediate conflicts among social groups, in particular, those between employers and employees. An evolutionary economic geography advocates an empirical research program, both qualitative and quantitative, that can address the relative importance of organizational routines and territorial institutions for regional development. [source] Evolutionary Economic Geography, Institutions, and Political EconomyECONOMIC GEOGRAPHY, Issue 2 2009Jürgen Essletzbichler abstract In this response to MacKinnon et al. (2009), I argue that the theoretical development of evolutionary economic geographies is necessary in order to evaluate its unique contribution to an understanding of the uneven development of the space economy; that the distinction between evolutionary and institutional economic geographies is overdrawn; that the neglect of class, power, and the state reflect empirical rather than theoretical shortcomings of the evolutionary approach; and that there is significant potential overlap between evolutionary and political economy approaches. [source] Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phylaENVIRONMENTAL MICROBIOLOGY, Issue 4 2007Jay McCarren Summary Since the recent discovery of retinylidene proteins in marine bacteria (proteorhodopsins), the estimated abundance and diversity of this gene family has expanded rapidly. To explore proteorhodopsin photosystem evolutionary and distributional trends, we identified and compared 16 different proteorhodopsin-containing genome fragments recovered from naturally occurring bacterioplankton populations. In addition to finding several deep-branching proteorhodopsin sequences, proteorhodopsins were found in novel taxonomic contexts, including a betaproteobacterium and a planctomycete. Approximately one-third of the proteorhodopsin-containing genome fragments analysed, as well as a number of recently reported marine bacterial whole genome sequences, contained a linked set of genes required for biosynthesis of the rhodopsin chromophore, retinal. Phylogenetic analyses of the retinal biosynthetic genes suggested their co-evolution and probable coordinated lateral gene transfer into disparate lineages, including Euryarchaeota, Planctomycetales, and three different proteobacterial lineages. The lateral transfer and retention of genes required to assemble a functional proteorhodopsin photosystem appears to be a coordinated and relatively frequent evolutionary event. Strong selection pressure apparently acts to preserve these light-dependent photosystems in diverse marine microbial lineages. [source] UNCOORDINATED PHYLOGEOGRAPHY OF BORRELIA BURGDORFERI AND ITS TICK VECTOR, IXODES SCAPULARISEVOLUTION, Issue 9 2010Parris T. Humphrey Vector-borne microbes necessarily co-occur with their hosts and vectors, but the degree to which they share common evolutionary or biogeographic histories remains unexplored. We examine the congruity of the evolutionary and biogeographic histories of the bacterium and vector of the Lyme disease system, the most prevalent vector-borne disease in North America. In the eastern and midwestern US, Ixodes scapularis ticks are the primary vectors of Borrelia burgdorferi, the bacterium that causes Lyme disease. Our phylogeographic and demographic analyses of the 16S mitochondrial rDNA suggest that northern I. scapularis populations originated from very few migrants from the southeastern US that expanded rapidly in the Northeast and subsequently in the Midwest after the recession of the Pleistocene ice sheets. Despite this historical gene flow, current tick migration is restricted even between proximal sites within regions. In contrast, B. burgdorferi suffers no barriers to gene flow within the northeastern and midwestern regions but shows clear interregional migration barriers. Despite the intimate association of B. burgdorferi and I. scapularis, the population structure, evolutionary history, and historical biogeography of the pathogen are all contrary to its arthropod vector. In the case of Lyme disease, movements of infected vertebrate hosts may play a larger role in the contemporary expansion and homogenization of the pathogen than the movement of tick vectors whose populations continue to bear the historical signature of climate-induced range shifts. [source] | |||||||||||||||||||||||||||||||||||||||||||||||||