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Dominant Taxa (dominant + taxa)
Selected AbstractsFrom the mountains to the sea: assemblage structure and dynamics in Chironomidae (Insecta: Diptera) in the Clyde River estuarine gradient, New South Wales, south-eastern AustraliaAUSTRALIAN JOURNAL OF ENTOMOLOGY, Issue 3 2007Sophia Dimitriadis Abstract, Chironomidae (Insecta: Diptera: non-biting midges) were surveyed at five shallow riffle stations along the estuarine gradient of the Clyde River, southern New South Wales (35°45,S, 150°15,E). Benthic populations were sampled seasonally between April 2001 and January 2002, between an uppermost fully fresh station and 7 km south of the tidal limit at Shallow Crossing, encompassing a 23 km stretch. Biological structure and integrity of chironomid assemblages, which are essentially unknown in eastern Australia's estuarine environments, were elucidated. Assemblages were diverse: from 5732 chironomid larvae, 45 species belonging to four subfamilies were identified from riffles. All chironomid assemblages were strongly structured and non-random with respect to spatial position along the salinity gradient although relatively random with respect to temporal shifts between the five seasonal samples. Generally, the salinity gradient had strong effects on assemblage composition but no discrete brackish fauna was identifiable, and the abundance of many species declined gradually with distance from the freshest station. Dominant taxa in the brackish zone were Parakiefferiella,variegatus' and two species of Cladotanytarsus. Notably, the little-known Semiocladius crassipennis Skuse (Orthocladiinae) was abundant at the most marine-influenced station. Taxa present exclusively in freshwaters included several Tanypodinae notably absent from sites below Shallow Crossing at salinities normally tolerated in athalassic waters. Other species restricted to freshwaters included Nanocladius sp., Demicryptochironomus (Irmakia) sp., Polypedilum vespertinus (Skuse), Zavrelliella fuscoguttata (Kieffer), Riethia stictoptera (Kieffer) and Podonomopsis sp. [source] Metagenomic signatures of 86 microbial and viral metagenomesENVIRONMENTAL MICROBIOLOGY, Issue 7 2009Dana Willner Summary Previous studies have shown that dinucleotide abundances capture the majority of variation in genome signatures and are useful for quantifying lateral gene transfer and building molecular phylogenies. Metagenomes contain a mixture of individual genomes, and might be expected to lack compositional signatures. In many metagenomic data sets the majority of sequences have no significant similarities to known sequences and are effectively excluded from subsequent analyses. To circumvent this limitation, di-, tri- and tetranucleotide abundances of 86 microbial and viral metagenomes consisting of short pyrosequencing reads were analysed to provide a method which includes all sequences that can be used in combination with other analysis to increase our knowledge about microbial and viral communities. Both principal component analysis and hierarchical clustering showed definitive groupings of metagenomes drawn from similar environments. Together these analyses showed that dinucleotide composition, as opposed to tri- and tetranucleotides, defines a metagenomic signature which can explain up to 80% of the variance between biomes, which is comparable to that obtained by functional genomics. Metagenomes with anomalous content were also identified using dinucleotide abundances. Subsequent analyses determined that these metagenomes were contaminated with exogenous DNA, suggesting that this approach is a useful metric for quality control. The predictive strength of the dinucleotide composition also opens the possibility of assigning ecological classifications to unknown fragments. Environmental selection may be responsible for this dinucleotide signature through direct selection of specific compositional signals; however, simulations suggest that the environment may select indirectly by promoting the increased abundance of a few dominant taxa. [source] Biofilm formation by algae as a mechanism for surviving on mine tailingsENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 3 2005J. Viridiana García-Meza Abstract Photosynthetic biofilms successfully colonize the sediments of a mine tailings reservoir (Guanajuato, Mexico) despite the high metal concentrations that are present. To elucidate the mechanisms of biofilm survival despite metal ores, experiments were performed to evaluate the response of seminatural biofilms to Cu, Zn, and a combination of both metals at concentrations observed in the field. The biofilms were composed mostly of the chlorophyte Chlorococcum sp. and the cyanobacterium Phormidium sp., and their response to the two added metals was described by measurements of extracellular polymeric substances (EPS) and in vivo fluorescence. The photosynthetic efficiency and the minimal chlorophyll fluorescence of dark-adapted cells were measured by multiwavelength pulse amplitude,modulated fluorometry. The photosynthetic efficiency of light-adapted cells (,PSII) also was measured. Metal exposure increased the EPS production of biofilms, as visualized with confocal laser-scanning microscopy. Extracellular polymeric substances enhanced the extracellular metal accumulation from the first day of metal exposure. Metals provoked changes in the relative abundance of the dominant taxa because of a species-specific response to the metals when added individually. Metals affected the ,psii less than the total biomass, suggesting ongoing activity of the surviving biofilms. Survival of individual biofilm photosynthetic cells was found to resume from the embedding in the mucilaginous structure, which immobilizes the metals extracellularly. The survival of biofilms under mixed-metal exposure has practical applications in the remediation of mine tailings. [source] Convergence of fish communities from the littoral zone of reservoirsFRESHWATER BIOLOGY, Issue 6 2009KEITH B. GIDO Summary 1.,Understanding factors that regulate the assembly of communities is a main focus of ecology. Human-engineered habitats, such as reservoirs, may provide insight into these assembly processes because they represent novel habitats that are subjected to colonization by fishes from the surrounding river basin or transported by humans. By contrasting community similarity within and among reservoirs from different drainage basins to nearby stream communities, we can test the relative constraints of reservoir habitats and regional species pools in determining species composition of reservoirs. 2.,We used a large spatial database that included intensive collections from 143 stream and 28 reservoir sites within three major river basins in the Great Plains, U.S.A., to compare patterns of species diversity and community structure between streams and reservoirs and to characterize variation in fish community structure within and among major drainage basins. We expected reservoir fish faunas to reflect the regional species pool, but would be more homogeneous that stream communities because similar species are stocked and thrive in reservoirs (e.g. planktivores and piscivores), and they lack obligate stream organisms that are not shared among regional species pools. 3.,We found that fish communities from reservoirs were a subset of fishes collected from streams and dominant taxa had ecological traits that would be favoured in lentic environments. Although there were regional differences in reservoir fish communities, species richness, patterns of rank abundance and community structure in reservoir communities were more homogonous across three major drainage basins than for stream communities. 4.,The general pattern of convergence of reservoir fish community structure suggests their assembly is constrained by local factors such as habitat and biotic interactions, and facilitated by the introduction of species among basins. Because there is a reciprocal transfer of biota between reservoirs and streams, understanding factors structuring both habitats is necessary to evaluate the long-term dynamics of impounded river networks. [source] Transformation of the offshore benthic community in Lake Michigan: recent shift from the native amphipod Diporeia spp. to the invasive mussel Dreissena rostriformis bugensisFRESHWATER BIOLOGY, Issue 3 2009THOMAS F. NALEPA Summary 1. The native amphipod Diporeia spp. was once the dominant benthic organism in Lake Michigan and served as an important pathway of energy flow from lower to upper trophic levels. Lake-wide surveys were conducted in 1994/1995, 2000 and 2005, and abundances of Diporeia and the invasive bivalves Dreissena polymorpha (zebra mussel) and Dreissena rostriformis bugensis (quagga mussel) were assessed. In addition, more frequent surveys were conducted in the southern region of the lake between 1980 and 2007 to augment trend interpretation. 2. Between 1994/1995 and 2005, lake-wide density of Diporeia declined from 5365 to 329 m,2, and biomass (dry weight, DW) declined from 3.9 to 0.4 g DW m,2. The percentage of all sites with no Diporeia increased over time: 1.1% in 1994/1995, 21.7% in 2000 and 66.9% in 2005. On the other hand, total dreissenid density increased from 173 to 8816 m,2, and total biomass increased from 0.4 to 28.6 g DW m,2. Over this 10-year time period, D. r. bugensis displaced D. polymorpha as the dominant dreissenid, comprising 97.7% of the total population in 2005. In 2007, Diporeia was rarely found at depths shallower than 90 m and continued to decline at greater depths, whereas densities of D. r. bugensis continued to increase at depths greater than 50 m. 3. The decline in Diporeia occurred progressively from shallow to deep regions, and was temporally coincident with the expansion of D. polymorpha in nearshore waters followed by the expansion of D. r. bugensis in offshore waters. In addition, Diporeia density was negatively related to dreissenid density within and across depth intervals; the latter result indicated that dreissenids in shallow waters remotely influenced Diporeia in deep waters. 4. With the loss of Diporeia and increase in D. r. bugensis, the benthic community has become a major energy sink rather that a pathway to upper trophic levels. With this replacement of dominant taxa, we estimate that the relative benthic energy pool increased from 17 to 109 kcal m,2 between 1994/1995 and 2005, and to 342 kcal m,2 by 2007. We project that previously observed impacts on fish populations will continue and become more pronounced as the D. r. bugensis population continues to expand in deeper waters. [source] Bacterial diversity of the digestive gland of Sydney rock oysters, Saccostrea glomerata infected with the paramyxean parasite, Marteilia sydneyiJOURNAL OF APPLIED MICROBIOLOGY, Issue 2 2010T.J. Green Abstract Aims:, To determine whether the infestation by the protozoan paramyxean parasite, Marteilia sydneyi, changes the bacterial community of the digestive gland of Sydney rock oysters, Saccostrea glomerata. Methods and Results:, Six 16S rDNA clone libraries were established from three M. sydneyi -infected and three un-infected oysters. Restriction enzyme analysis followed by sequencing representative clones revealed a total of 23 different operational taxonomic units (OTUs) in un-infected oysters, comprising the major phyla: Firmicutes, Proteobacteria, Cyanobacteria and Spirocheates, where the clone distribution was 44, 36, 7 and 5%, respectively. Close to half of the OTUs are not closely related to any other hitherto determined sequence. In contrast, S. glomerata infected by M. sydneyi had only one OTU present in the digestive gland. Phylogenetic analysis of the 16S rDNA sequence reveals that this dominant OTU, belonging to the ,-Proteobacteria, is closely related to a Rickettsiales -like prokaryote (RLP). Conclusions:, The microbiota of the digestive gland of Sydney rock oysters is changed by infection by M. sydneyi, becoming dominated by a RLP, and generally less diverse. The bacterial community of un-infected S. glomerata differs from previous studies in that we identified the dominant taxa as Firmicutes and ,-Proteobacteria, rather than heterotrophic ,-Proteobacteria. Significance and Impact of the Study:, This is the first culture-independent study of the microbiota of the digestive glands of edible oysters to the species level. The commercial viability of the Sydney rock oyster industry in Australia is currently threatened by Queensland Unknown disease and the changes in the bacterial community of S. glomerata corresponding with infection by M. sydneyi sheds further light on the link between parasite infection and mortality in this economically damaging disease. [source] The forests of presettlement New England, USA: spatial and compositional patterns based on town proprietor surveysJOURNAL OF BIOGEOGRAPHY, Issue 10-11 2002Charles V. Cogbill Abstract Aim, This study uses the combination of presettlement tree surveys and spatial analysis to produce an empirical reconstruction of tree species abundance and vegetation units at different scales in the original landscape. Location, The New England study area extends across eight physiographic sections, from the Appalachian Mountains to the Atlantic Coastal Plain. The data are drawn from 389 original towns in what are now seven states in the north-eastern United States. These towns have early land division records which document the witness trees growing in the town before European settlement (c. seventeenth to eighteenth century ad). Methods, Records of witness trees from presettlement surveys were collated from towns throughout the study area (1.3 × 105 km2). Tree abundance was averaged over town-wide samples of multiple forest types, integrating proportions of taxa at a local scale (102 km2). These data were summarized into genus groups over the sample towns, which were then mapped [geographical information system (GIS)], classified (Cluster Analysis) and ordinated [detrended correspondence analysis (DCA)]. Modern climatic and topographic variables were also derived from GIS analyses for each town and all town attributes were quantitatively compared. Distributions of both individual species and vegetation units were analysed and displayed for spatial analysis of vegetation structure. Results, The tally of 153,932 individual tree citations show a dominant latitudinal trend in the vegetation. Spatial patterns are concisely displayed as pie charts of genus composition arrayed on sampled towns. Detailed interpolated frequency surfaces show spatial patterns of range and abundance of the dominant taxa. Oak, spruce, hickory and chestnut reach distinctive range limits within the study area. Eight vegetation clusters are distinguished. The northern vegetation is a continuous geographical sequence typified by beech while the southern vegetation is an amorphous group typified by oak. Main conclusions, The wealth of information recorded in the New England town presettlement surveys is an ideal data base to elucidate the natural patterns of vegetation over an extensive spatial area. The timing, town-wide scale, expansive coverage, quantitative enumeration and unbiased estimates are critical advantages of proprietor lotting surveys in determining original tree distributions. This historical,geographical approach produces a vivid reconstruction of the natural vegetation and species distributions as portrayed on maps. The spatial, vegetational and environmental patterns all demonstrate a distinct ,tension zone' separating ,northern hardwood' and ,central hardwood' towns. The presettlement northern hardwood forests, absolutely dominated by beech, forms a continuum responding to a complex climatic gradient of altitude and latitude. The oak forests to the south are distinguished by non-zonal units, probably affected by fire. Although at the continental scale, the forests seem to be a broad transition, at a finer scale they respond to topography such as the major valleys or the northern mountains. This study resets some preconceptions about the original forest, such as the overestimation of the role of pine, hemlock and chestnut and the underestimation of the distinctiveness of the tension zone. Most importantly, the forests of the past and their empirical description provide a basis for many ecological, educational and management applications today. [source] Generalised regressions provide good estimates of insect and spider biomass in the monsoonal tropics of AustraliaAUSTRALIAN JOURNAL OF ENTOMOLOGY, Issue 3 2006Christopher J Brady Abstract, The estimation of arthropod biomass is often important in studies of terrestrial ecosystem structure and function, including analyses of the relative importance of different arthropod taxa in the diet of insectivorous animals. In order to estimate arthropod biomass in eucalypt woodlands and rehabilitated mine-land in the monsoonal tropics of northern Australia, insect morpho-species (n = 693) and spider morpho-species (n = 100) were collected, sorted, then weighed and measured. Body length,weight regressions were determined for spiders, nine insect orders and all insects combined. There was a significant relationship between body length and weight for all taxonomic groups, with the power model being a better predictor than linear or exponential models for all groups except Diptera (which was best predicted by the linear model). Whilst Schoener (1980) found that the length,weight regression slopes of neotropical insects (all orders combined, as well as several individual orders) differed from those of their temperate North American counterparts, our comparisons between monsoon-tropical and temperate Australian arthropods suggested differences among Dipterans and spiders only. We conclude that generalised regressions provide adequate estimates of arthropod biomass across Australia, providing that the body proportions of the dominant taxa do not vary substantively. [source] |