Home About us Contact
|
Home About us Contact | ||
|
|
||
Diverse Organisms (diverse + organism)
Selected AbstractsMETAMODELS AND PHYLOGENETIC REPLICATION: A SYSTEMATIC APPROACH TO THE EVOLUTION OF DEVELOPMENTAL PATHWAYSEVOLUTION, Issue 11 2009Artyom Kopp Molecular genetic analysis of phenotypic variation has revealed many examples of evolutionary change in the developmental pathways that control plant and animal morphology. A major challenge is to integrate the information from diverse organisms and traits to understand the general patterns of developmental evolution. This integration can be facilitated by evolutionary metamodels,traits that have undergone multiple independent changes in different species and whose development is controlled by well-studied regulatory pathways. The metamodel approach provides the comparative equivalent of experimental replication, allowing us to test whether the evolution of each developmental pathway follows a consistent pattern, and whether different pathways are predisposed to different modes of evolution by their intrinsic organization. A review of several metamodels suggests that the structure of developmental pathways may bias the genetic basis of phenotypic evolution, and highlights phylogenetic replication as a value-added approach that produces deeper insights into the mechanisms of evolution than single-species analyses. [source] Introductory perspective on the COREF ProjectISLAND ARC, Issue 4 2006Yasufumi Iryu Abstract Coral reefs are tropic to subtropic, coastal ecosystems comprising very diverse organisms. Late Quaternary reef deposits are fossil archives of environmental, tectonic and eustatic variations that can be used to reconstruct the paleoclimatic and paleoceanographic history of the tropic surface oceans. Reefs located at the latitudinal limits of coral-reef ecosystems (i.e. those at coral-reef fronts) are particularly sensitive to environmental changes , especially those associated with glacial,interglacial changes in climate and sealevel. We propose a land and ocean scientific drilling campaign in the Ryukyu Islands (the Ryukyus) in the northwestern Pacific Ocean to investigate the dynamic response of the corals and coral-reef ecosystems in this region to Late Quaternary climate and sealevel change. Such a drilling campaign, which we call the COREF (coral-reef front) Project, will allow the following three major questions to be evaluated: (i) What are the nature, magnitude and driving mechanisms of coral-reef front migration in the Ryukyus? (ii) What is the ecosystem response of coral reefs in the Ryukyus to Quaternary climate changes? (iii) What is the role of coral reefs in the global carbon cycle? Subsidiary objectives include (i) the timing of coral-reef initiation in the Ryukyus and its causes; (ii) the position of the Kuroshio current during glacial periods and its effects on coral-reef formation; and (iii) early carbonate diagenetic responses as a function of compounded variations in climate, eustacy and depositional mineralogies (subtropic aragonitic to warm-temperate calcitic). The geographic, climatic and oceanographic settings of the Ryukyu Islands provide an ideal natural laboratory to address each of these research questions. [source] Minimizing errors in identifying Lévy flight behaviour of organismsJOURNAL OF ANIMAL ECOLOGY, Issue 2 2007DAVID W. SIMS Summary 1Lévy flights are specialized random walks with fundamental properties such as superdiffusivity and scale invariance that have recently been applied in optimal foraging theory. Lévy flights have movement lengths chosen from a probability distribution with a power-law tail, which theoretically increases the chances of a forager encountering new prey patches and may represent an optimal solution for foraging across complex, natural habitats. 2An increasing number of studies are detecting Lévy behaviour in diverse organisms such as microbes, insects, birds, and mammals including humans. A principal method for detecting Lévy flight is whether the exponent (µ) of the power-law distribution of movement lengths falls within the range 1 < µ , 3. The exponent can be determined from the histogram of frequency vs. movement (step) lengths, but different plotting methods have been used to derive the Lévy exponent across different studies. 3Here we investigate using simulations how different plotting methods influence the µ-value and show that the power-law plotting method based on 2k (logarithmic) binning with normalization prior to log transformation of both axes yields low error (1·4%) in identifying Lévy flights. Furthermore, increasing sample size reduced variation about the recovered values of µ, for example by 83% as sample number increased from n = 50 up to 5000. 4Simple log transformation of the axes of the histogram of frequency vs. step length underestimated µ by c.40%, whereas two other methods, 2k (logarithmic) binning without normalization and calculation of a cumulative distribution function for the data, both estimate the regression slope as 1 , µ. Correction of the slope therefore yields an accurate Lévy exponent with estimation errors of 1·4 and 4·5%, respectively. 5Empirical reanalysis of data in published studies indicates that simple log transformation results in significant errors in estimating µ, which in turn affects reliability of the biological interpretation. The potential for detecting Lévy flight motion when it is not present is minimized by the approach described. We also show that using a large number of steps in movement analysis such as this will also increase the accuracy with which optimal Lévy flight behaviour can be detected. [source] Biomarkers of aging in DrosophilaAGING CELL, Issue 4 2010Jake Jacobson Summary Low environmental temperature and dietary restriction (DR) extend lifespan in diverse organisms. In the fruit fly Drosophila, switching flies between temperatures alters the rate at which mortality subsequently increases with age but does not reverse mortality rate. In contrast, DR acts acutely to lower mortality risk; flies switched between control feeding and DR show a rapid reversal of mortality rate. Dietary restriction thus does not slow accumulation of aging-related damage. Molecular species that track the effects of temperatures on mortality but are unaltered with switches in diet are therefore potential biomarkers of aging-related damage. However, molecular species that switch upon instigation or withdrawal of DR are thus potential biomarkers of mechanisms underlying risk of mortality, but not of aging-related damage. Using this approach, we assessed several commonly used biomarkers of aging-related damage. Accumulation of fluorescent advanced glycation end products (AGEs) correlated strongly with mortality rate of flies at different temperatures but was independent of diet. Hence, fluorescent AGEs are biomarkers of aging-related damage in flies. In contrast, five oxidized and glycated protein adducts accumulated with age, but were reversible with both temperature and diet, and are therefore not markers either of acute risk of dying or of aging-related damage. Our approach provides a powerful method for identification of biomarkers of aging. [source] Trehalose extends longevity in the nematode Caenorhabditis elegansAGING CELL, Issue 4 2010Yoko Honda Summary Trehalose is a disaccharide of glucose found in diverse organisms and is suggested to act as a stress protectant against heat, cold, desiccation, anoxia, and oxidation. Here, we demonstrate that treatment of Caenorhabditis elegans with trehalose starting from the young-adult stage extended the mean life span by over 30% without any side effects. Surprisingly, trehalose treatment starting even from the old-adult stage shortly thereafter retarded the age-associated decline in survivorship and extended the remaining life span by 60%. Demographic analyses of age-specific mortality rates revealed that trehalose extended the life span by lowering age-independent vulnerability. Moreover, trehalose increased the reproductive span and retarded the age-associated decrease in pharyngeal-pumping rate and the accumulation of lipofuscin autofluorescence. Trehalose also enhanced thermotolerance and reduced polyglutamine aggregation. These results suggest that trehalose suppressed aging by counteracting internal or external stresses that disrupt protein homeostasis. On the other hand, the life span-extending effect of trehalose was abolished in long-lived insulin/IGF-1-like receptor (daf-2) mutants. RNA interference-mediated inactivation of the trehalose-biosynthesis genes trehalose-6-phosphate synthase-1 (tps-1) and tps-2, which are known to be up-regulated in daf-2 mutants, decreased the daf-2 life span. These findings indicate that a reduction in insulin/IGF-1-like signaling extends life span, at least in part, through the aging-suppressor function of trehalose. Trehalose may be a lead compound for potential nutraceutical intervention of the aging process. [source] DILP-producing median neurosecretory cells in the Drosophila brain mediate the response of lifespan to nutritionAGING CELL, Issue 3 2010Susan J. Broughton Summary Dietary restriction extends lifespan in diverse organisms, but the gene regulatory mechanisms and tissues mediating the increased survival are still unclear. Studies in worms and flies have revealed a number of candidate mechanisms, including the target of rapamycin and insulin/IGF-like signalling (IIS) pathways and suggested a specific role for the nervous system in mediating the response. A pair of sensory neurons in Caenorhabditis elegans has been found to specifically mediate DR lifespan extension, but a neuronal focus in the Drosophila nervous system has not yet been identified. We have previously shown that reducing IIS via the partial ablation of median neurosecretory cells in the Drosophila adult brain, which produce three of the seven fly insulin-like peptides, extends lifespan. Here, we show that these cells are required to mediate the response of lifespan to full feeding in a yeast dilution DR regime and that they appear to do so by mechanisms that involve both altered IIS and other endocrine effects. We also present evidence of an interaction between these mNSCs, nutrition and sleep, further emphasising the functional homology between the DILP-producing neurosecretory cells in the Drosophila brain and the hypothalamus of mammals in their roles as integration sites of many inputs for the control of lifespan and behaviour. [source] MACROEVOLUTION AND MACROECOLOGY THROUGH DEEP TIMEPALAEONTOLOGY, Issue 1 2007NICHOLAS J. BUTTERFIELD Abstract:, The fossil record documents two mutually exclusive macroevolutionary modes separated by the transitional Ediacaran Period. Despite the early appearance of crown eukaryotes and an at least partially oxygenated atmosphere, the pre-Ediacaran biosphere was populated almost exclusively by microscopic organisms exhibiting low diversity, no biogeographical partitioning and profound morphological/evolutionary stasis. By contrast, the post-Ediacaran biosphere is characterized by large diverse organisms, bioprovinciality and conspicuously dynamic macroevolution. The difference can be understood in terms of the unique escalatory coevolution accompanying the early Ediacaran introduction of eumetazoans, followed by their early Cambrian (Tommotian) expansion into the pelagic realm. Eumetazoans reinvented the rules of macroecology through their invention of multitrophic food webs, large body size, life-history trade-offs, ecological succession, biogeography, major increases in standing biomass, eukaryote-dominated phytoplankton and the potential for mass extinction. Both the pre-Ediacaran and the post-Ediacaran biospheres were inherently stable, but the former derived from the simplicity of superabundant microbes exposed to essentially static, physical environments, whereas the latter is based on eumetazoan-induced diversity and dynamic, biological environments. The c. 100-myr Ediacaran transition (extending to the base of the Tommotian) can be defined on evolutionary criteria, and might usefully be incorporated into the Phanerozoic. [source] From plant,microbe interactions to symbiogenetics: a universal paradigm for the interspecies genetic integrationANNALS OF APPLIED BIOLOGY, Issue 3 2009I.A. Tikhonovich Abstract Beneficial plant,microbe symbioses are based on the integration of genetic material from diverse organisms resulting in formation of superorganism genetic systems. Analysis of their functions and evolution requires the establishment of a new biological discipline, proposed to be called symbiogenetics, which provides a basis for fundamental and applied research of the genetic control over different (symbiotic and biocenotic) biotic interactions. In ecology and agrobiology, the approaches of symbiogenetics are indispensable for optimising the interactions between the plants and the beneficial microbes to be used in ecosystem management and in sustainable crop production in which hazardous fertilisers and pesticides should be replaced by environmentally friendly microbial inoculants. [source] | |||||||||||||