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Desorption/ionisation Time-of-flight Mass Spectrometry (desorption + time-of-flight_mass_spectrometry)
Kinds of Desorption/ionisation Time-of-flight Mass Spectrometry Selected AbstractsDetection and characterization of variant and modified structures of proteins in blood and tissues by mass spectrometryMASS SPECTROMETRY REVIEWS, Issue 5 2006Akira Shimizu Abstract Some variant proteins cause diseases, and some diseases result in increases of proteins with abnormally modified structures. The detection, characterization, and estimation of the relative amounts of protein variants and abnormally modified proteins are important for clinical diagnosis and for elucidation of the mechanisms of the pathogenesis of diseases. Analysis of the covalent structures of proteins using matrix-assisted laser desorption time-of-flight mass spectrometry (MALDI-TOF-MS) and liquid chromatography-electrospray ionization MS (LC-ESI-MS), which had been developed by the early 1990s, have largely replaced analyses by conventional protein chemistry. Here, we review the detection and characterization of hemoglobin variants, HbA1c measurement, detection of carbohydrate-deficient transferrin, and identification of variants of transthyretin (TTR) and Cu/Zn-superoxide dismutase (SOD-1) using soft ionization MS. We also propose the diagnostic application of the signals of modified forms of TTR, that is, S-sulfonated TTR and S-homocysteinyl TTR. The relative peak height ratio of the abnormal/normal components gives valuable information about the instability of variants and enables the detection of unstable Hb subunits or thalassemia heterozygotes. We found unique modified structures of TTR that suggested changes in amyloid fibrils. © 2006 Wiley Periodicals, Inc. [source] Molecular mass ranges of coal tar pitch fractions by mass spectrometry and size-exclusion chromatographyRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 13 2009F. Karaca A coal tar pitch was fractionated by solvent solubility into heptane-solubles, heptane-insoluble/toluene-solubles (asphaltenes), and toluene-insolubles (preasphaltenes). The aim of the work was to compare the mass ranges of the different fractions by several different techniques. Thermogravimetric analysis, size-exclusion chromatography (SEC) and UV-fluorescence spectroscopy showed distinct differences between the three fractions in terms of volatility, molecular size ranges and the aromatic chromophore sizes present. The mass spectrometric methods used were gas chromatography/mass spectrometry (GC/MS), pyrolysis/GC/MS, electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICRMS) and laser desorption time-of-flight mass spectrometry (LD-TOFMS). The first three techniques gave good mass spectra only for the heptane-soluble fraction. Only LDMS gave signals from the toluene-insolubles, indicating that the molecules were too involatile for GC and too complex to pyrolyze into small molecules during pyrolysis/GC/MS. ESI-FTICRMS gave no signal for toluene-insolubles probably because the fraction was insoluble in the methanol or acetonitrile, water and formic acid mixture used as solvent to the ESI source. LDMS was able to generate ions from each of the fractions. Fractionation of complex samples is necessary to separate smaller molecules to allow the use of higher laser fluences for the larger molecules and suppress the formation of ionized molecular clusters. The upper mass limit of the pitch was determined as between 5000 and 10,000,u. The pitch asphaltenes showed a peak of maximum intensity in the LDMS spectra at around m/z 400, in broad agreement with the estimate from SEC. The mass ranges of the toluene-insoluble fraction found by LDMS and SEC (400,10,000,u with maximum intensity around 2000,u by LDMS and 100,9320,u with maximum intensity around 740,u by SEC) are higher than those for the asphaltene fraction (200,4000,u with maximum intensity around 400,u by LDMS and 100,2680,u with maximum intensity around 286,u by SEC) and greater than values considered appropriate for petroleum asphaltenes (300,1200,u with maximum intensity near 700,u). Copyright © 2009 John Wiley & Sons, Ltd. [source] Investigation of norflurazon pesticide photodegradation using plasma desorption time-of-flight mass spectrometry analysisRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 16 2008J.-P. Thomas We have previously demonstrated that PD-TOFMS (plasma desorption time-of-flight mass spectrometry) analysis is a powerful technique for the in situ analysis of pesticides deposited or adsorbed on solid materials. With the aim of producing reproducible data on the modification of a pesticide under controlled photodegradation conditions, we have now undertaken a study where both the substrate and the pesticide are well characterized. This is the case for norflurazon deposited onto an aluminium substrate, in particular regarding the reproducibility of preparation of the samples and the change with time of their chemical composition. Degradation parameters have been derived from the variation in yield of ions representative of the molecule and of its breakdown products and, particularly, from the time required for 50% dissipation of their initial concentration (DT50). DT50 values ranging between 1 and 10,h have been found. An interpretation of the degradation process is proposed from the decay of other ions. As expected, the degradation is faster when the UV sunlight is unfiltered (a factor of 3.8 for the molecule, and around 5 for the breakdown products). Copyright © 2008 John Wiley & Sons, Ltd. [source] Assessment of the plasma desorption time-of-flight mass spectrometry technique for pesticide adsorption and degradation on ,as-received' treated soil samplesRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 17 2005J. P. Thomas The assessment of the plasma desorption time-of-flight mass spectrometry (PD-TOFMS) technique as a tool for direct characterization of pesticides adsorbed on agricultural soil is made for the first time in this study. Pellets of soils impregnated by solutions of three pesticides, namely norflurazon, malathion and oxyfluorfen, as well as deposits of these solutions onto aluminum surfaces, were investigated to this end. The yield values of the most characteristic peaks of the negative ion mass spectra were used to determine both the lowest concentrations detected on soils and limits of detection from thin films. The lowest values on soils are for malathion (1000,ppm range), and the largest for norflurazon (20,000,ppm), which is close to the limit of detection (LOD) found for the pesticide on the aluminum substrate (,0.2,µg,·,cm,2). Different behaviors were observed as a function of time of storage in the ambient atmosphere or under vacuum; norflurazon adsorbed on soil exhibited high stability for a long period of time, and a rapid degradation of malathion with the elapsed time was clearly observed. The behavior of oxyfluorfen was also investigated but segregation processes seem to occur after several days. Although by far less sensitive than conventional methods based on extraction processes and used for real-world analytical applications, this technique is well suited to the study of the transformations occurring at the sample surface. A discussion is presented of the future prospects of such experiments in degradation studies. Copyright © 2005 John Wiley & Sons, Ltd. [source] Identification of four low molecular and water-soluble proteins from grape (Vitis vinifera L.) seedsINTERNATIONAL JOURNAL OF FOOD SCIENCE & TECHNOLOGY, Issue 6 2010Ting Zhou Summary Profiles of soluble proteins isolated from mature seeds of grape (Vitis vinifera L.) pomace were studied using two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) coupled with matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI,TOF,MS). Two-dimensional gels stained with Coomassie brilliant blue revealed more than fifty protein spots. Four abundant protein spots showing low molecular weight (Mr) and wide isoelectric point (pI) were analysed by MALDI,TOF,MS, resulting in their identification. Taken together, these results suggest that identified proteins may be linked to seed development and metabolism, but more instructive is that they have some potential functions for future food application. These results provide some insights into conversion of grape processing wastes into useful products or even as raw material for other industries. [source] Cranberry proanthocyanidins associate with low-density lipoprotein and inhibit in vitro Cu2+ -induced oxidation,JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 14 2001Mandy L Porter Abstract Antioxidant activity of six fractions of cranberry phenolic compounds was determined by inhibition of Cu2+ -induced low-density lipoprotein (LDL) oxidation. The phenolic composition of each fraction was determined by high-performance liquid chromatography. The phenolic fractions were mixed with aliquots of modified human serum prior to LDL isolation. The serum was modified to remove very-low-density lipoprotein and chylomicrons that may bind phenolic compounds. Only fractions 5 and 6 that contained proanthocyanidins (PAs) significantly increased the lag time of LDL oxidation, and the lag time for fraction 6 was significantly higher than for fraction 5. The mass distribution of PAs in these fractions was obtained by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry, a technique that allows rapid characterisation of the molecular weight distribution in mixtures of oligomeric compounds. Fraction 5 contained trimers through heptamers, whereas fraction 6 contained pentamers through nonamers. In addition, fraction 6 contained PA oligomers with more doubly linked, A-type interflavan bonds. Results indicate that PAs specifically associate with LDL in modified serum and increase the lag time of Cu2+ -induced oxidation. Differences between fractions 5 and 6 in PA structure and effects on LDL oxidation suggest that the degree of polymerisation and the nature of the interflavan bond influence antioxidant properties. © 2001 Society of Chemical Industry [source] Preparation of Scratch- and Abrasion-Resistant Polymeric Nanocomposites by Monomer Grafting onto Nanoparticles, 4,MACROMOLECULAR CHEMISTRY AND PHYSICS, Issue 3 2003Frank Bauer Abstract To obtain transparent, scratch- and abrasion-resistant coating materials a high content of nanosized silica and alumina filler was embedded in radiation-curable acrylate formulations by acid catalyzed silylation using trialkoxysilanes. 29Si magic angle spinning (MAS) NMR spectroscopy and matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS) were used to elucidate the structure of the surface-grafted methacryloxypropyl-, vinyl-, and n -propyltrimethoxysilane. 29Si MAS NMR measurements revealed a predominance of T2 and T3 structures of silicon atoms, i.e., silane oligomers have been formed by an extensive loss of water. For methacryloxypropyltrimethoxysilane, the proportion of the highly condensed T3 silicon atoms was estimated to be 75%. In accordance with these NMR findings, MALDI-TOF MS showed highly condensed oligomeric siloxanes of more than 20 monomeric silane units. The degree of silane condensation is higher on alumina than on silica, irrespective to the addition of maleic acid as catalyst. Moreover, completely condensed silsesquioxanes, e.g., octamers, decamers, and dodecamers, were detected. Based on the observed MS pattern, a ladder-like arrangement of two linked siloxane chains forming connected eight-membered rings is proposed, which is similar for all of the condensed organosilanes under study. The grafted polysiloxanes lead to an organophilation of inorganic nanofillers and improve their dispersibility in acrylate suspensions. Proposed ladder-like arrangement of the T3 structure of silicon atoms in polysiloxanes grafted on the silica surface. [source] Fractionation of grape tannins and analysis by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometryPHYTOCHEMICAL ANALYSIS, Issue 4 2003Camille Perret Abstract Polymeric tannins, extracted from grape berries (Gamay variety), were fractionated according to their mean degree of polymerisation (mDP) on a styrene,divinylbenzene phase eluted with a gradient of methanol:chloroform. Increasing the percentage of methanol led to the solubilisation of higher molecular weight tannins. The mean mDP of each collected fraction was determined by acid-catalysed degradation in the presence of a nucleophilic reagent. The fractionation method produced a linear gradient of mDP varying between 1.84 and 19.34. The fractions were partially characterised by matrix assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF/MS). The spectra showed a complex mixture of proanthocyanidins and galloylated proanthocyanidins up to 4000,amu. Copyright © 2003 John Wiley & Sons, Ltd. [source] Rapid identification of differentiation markers from whole epithelial cells by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry and statistical analysisRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 8 2008Laure F. Marvin-Guy Matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOFMS) was applied to identify markers for cellular differentiation. The differentiation of a human colon epithelial carcinoma T84 cell line was monitored over a period of 28 days by transepithelial electrical resistance (TER) measurements, alkaline phosphatase (AP) assay, and MALDI-TOF mass spectral fingerprints combined with statistical analysis. MALDI-MS generated specific mass spectral fingerprints characteristic of cell differentiation. Twenty-two ions were selected as diagnostic signals of fully differentiated T84 cells. Ten protein ion signals, detected by MALDI-MS and validated by statistical analysis, were proposed as T84 cell differentiation markers. Among these signals, ubiquitin was identified as a T84 cell differentiation marker by nanospray liquid chromatography/tandem mass spectrometry (nanoLC/MS/MS). Moreover, depending on the concentration of the cells seeded on the growth support, it was possible to predict the timing of the exponential phase and of cellular differentiation by MALDI-MS-derived marker ions. MALDI-TOFMS was compared to other methods for the determination of cellular differentiation: TER measurements are rapid but yield limited information as to the cellular differentiation state. AP assays are more specific for the differentiation state but take more time. By contrast, MALDI-MS has been found to be a fast, sensitive and precise method for cell differentiation assessment and provides the opportunity for multiplexing and high throughput. Moreover, the consumable costs per assay are very low. Copyright © 2008 John Wiley & Sons, Ltd. [source] Matrix-assisted laser desorption/ionisation mass spectrometry for the direct analysis of enzymatically digested kappa - iota - and hybrid iota/nu -carrageenans,RAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 16 2005Aristotelis Antonopoulos Enzymatically digested oligosaccharides of kappa -, iota - and hybrid iota/nu -carrageenans were analysed using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry in the negative-ion mode. nor -Harmane was used as matrix. Depending on the stock concentration and the laser intensity applied, the oligosaccharides exhibited losses of sulphate units (neutralised by the Na+ ion, and thus non-stable), leaving the primary backbone structure in most cases with only the deprotonated sulphate groups (carrying the negative charge, stable). This meant that kappa - and iota -oligosaccharides could not be easily distinguished from one another since they share the same primary backbone structure. However, for the hybrid iota/nu -oligosaccharides the primary backbone structure could be identified since the nu -carrageenan repeating unit differs from that of the kappa/iota -carrageenan unit. For all types of oligosaccharides, the results indicated cleavage of an anhydrogalactose unit from the non-reducing end. Specifically, for the hybrid oligosaccharides of iota/nu -carrageenans, this type of fragmentation means that the nu -carrageenan unit is not positioned on the non-reducing end of the hybrid oligosaccharides. Dehydration reactions, and exchange reactions of Na+ with K+ and Ca2+, were also observed. Copyright © 2005 John Wiley & Sons, Ltd. [source] Sample preparation effects in matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry of partially depolymerised carboxymethyl celluloseRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 11 2003Dane Momcilovic Sample preparation effects in matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOFMS) of partially depolymerised carboxymethyl cellulose (CMC) have been investigated. The depolymerisation was either enzymatic or acidic. Fractions of enzymatically depolymerised CMC were collected from size-exclusion chromatography (SEC) and further investigated by MALDI-TOFMS. 2,5-Dihydroxybenzoic acid was used as matrix, dissolved in H2O due to the poor solubility of CMC in suitable organic solvents. The samples were dried by two methods, in ambient atmosphere and at reduced pressure. Under reduced pressure the sample spot homogeneity increased. This drying method, however, produced additional adduct peaks in the mass spectra originating from ion exchange on the CMC oligomers. Analysis of CMC could be performed in both negative and positive ion modes. Mass discrimination and variation in ionisation efficiency were demonstrated by comparing mass spectra with SEC data. Measurements of the degree of substitution (DS) were performed on three CMCs with different DS values, which were depolymerised in trifluoroacetic acid. The three CMCs were easily distinguished from one another, but the obtained DS values deviated from the values supplied by the manufacturer. Copyright © 2003 John Wiley & Sons, Ltd. [source] Sample preparation effects in matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry of partially depolymerised methyl celluloseRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 11 2003Dane Momcilovic Methyl cellulose (MC) was partially depolymerised and the oligomers thus obtained were studied by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOFMS). The depolymerisation was either enzymatic or acidic. Fractions of enzymatically depolymerised MC were collected from size-exclusion chromatography and subjected to a sample preparation investigation. Several MALDI matrices and solvents were evaluated. The results showed that the solvent choice had a significant effect on the measured degree of substitution (DS). Aprotic solvents produced higher DS values, which was most likely due to poor solubility of species with low DS. The obtained signal intensity, however, did not correlate with the solubility but seemed to be more dependent on certain matrix/solvent combinations. All the matrices attempted produced mass spectra with sufficient signal intensity for accurate peak area calculation. The choice of matrix did not have any significant effect on the measured DS. Sample spots obtained from organic solvents had a more homogeneous distribution of the analyte and smaller crystals than those obtained from water. This increased both the reproducibility and peak resolution and in addition the analysis time was shorter. DS measurements were performed on two acidically depolymerised MCs with different nominal DS values. It was easy to distinguish between the two MCs, and the measured DS values agreed well with the values supplied by the manufacturers. Copyright © 2003 John Wiley & Sons, Ltd. [source] Determination of wheat quality by mass spectrometry and multivariate data analysisRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 21 2002David Mark Gottlieb Multivariate analysis has been applied as support to proteome analysis in order to implement an easier and faster way of data handling based on separation by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry. The characterisation phase in proteome analysis by means of simple visual inspection is a demanding process and also insecure because subjectivity is the controlling element. Multivariate analysis offers, to a considerable extent, objectivity and must therefore be regarded as a neutral way to evaluate results obtained by proteome analysis. Proteome analysis of storage proteins from the wheat gluten complex based on two-dimensional electrophoresis and analysis of the N-terminal sequence has revealed a protein homologous to ,-gliadins, tentatively associated with quality and within the molecular weight range 27,35,kDa. Further examinations of gliadin data based on mass spectrometry revealed that quality among wheat varieties could be determined by means of principal component analysis. Further examinations by interval partial least squares made it possible to encircle an overall optimal molecular weight interval from 31.5 to 33.7,kDa. The use of multivariate analysis on data from mass spectrometry has thus shown to be a promising technique to minimize the number of two-dimensional gels within the field of proteome analysis. Copyright © 2002 John Wiley & Sons, Ltd. [source] Investigation and correction of the gene-derived sequence of glutenin subunit 1Dx2 by matrix-assisted laser desorption/ionisation mass spectrometryRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 20 2002Vincenzo Cunsolo Direct matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOFMS) analysis of a mixture of tryptic peptides was used to verify the gene-derived amino acid sequence of the high molecular weight (HMW) subunit 1Dx2 of bread wheat. Analysis of the digest was performed by recording several MALDI mass spectra of the mixture at low, medium and high mass ranges, and optimising the matrix and the acquisition parameters for each mass range. This resulted in coverage of the whole sequence except for a short fragment T3 (3 amino acids), which was not detected. It also allowed the insertion of a Pro residue in position 59 to be identified. The results obtained provide evidence for the lack of a substantial level of glycosylation or other post-translational modifications of subunit 1Dx2, and demonstrate that MALDI-MS is the most useful method presently available for the direct verification of the gene-derived sequences of HMW glutenin subunits and similar proteins. Copyright © 2002 John Wiley & Sons, Ltd. [source] Variety identification of wheat using mass spectrometry with neural networks and the influence of mass spectra processing prior to neural network analysisRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 12 2002Helle Aagaard Sørensen The performance of matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry with neural networks in wheat variety classification is further evaluated.1 Two principal issues were studied: (a) the number of varieties that could be classified correctly; and (b) various means of pre-processing mass spectrometric data. The number of wheat varieties tested was increased from 10 to 30. The main pre-processing method investigated was based on Gaussian smoothing of the spectra, but other methods based on normalisation procedures and multiplicative scatter correction of data were also used. With the final method, it was possible to classify 30 wheat varieties with 87% correctly classified mass spectra and a correlation coefficient of 0.90. Copyright © 2002 John Wiley & Sons, Ltd. [source] | ||||||||||