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Database Management System (database + management_system)

Distribution by Scientific Domains

Life Sciences	50%
Information Science and Computing	33%

Selected Abstracts

VegTrack: A structured vegetation restoration activity database

ECOLOGICAL MANAGEMENT & RESTORATION, Issue 2 2009
Andre Zerger
Summary, Information about on-ground vegetation restoration activities (e.g. fencing and revegetation) is critical if natural resource management (NRM) groups are to monitor progress towards restoration targets, assess the efficacy of their interventions and adaptively learn from different actions. However, in Australia, there are few practical guidelines for recording data, making it difficult to consistently compare actions between sites and through time. Records of primary information are particularly important given the ongoing national investment in vegetation restoration activities. With the aid of six-case study areas in different landscapes, robust guidelines and tools were developed and incorporated into VegTrack, a methodology, which allows groups to develop their own vegetation restoration activity database. VegTrack differentiates spatial data from attribute data storing each in different databases (a GIS and a relational database management system respectively). We describe the process which enables NRM groups to develop their own database, and provide a Microsoft Access 2003 version of VegTrack to allow NRM groups to commence activity recording. To demonstrate the utility of the VegTrack method in different situations and to encourage consistency across study areas, we describe the application of the guidelines for several scenarios including riparian revegetation, corridors disrupted by roads and infill plantings. [source]

A framework of knowledge versioning management

EXPERT SYSTEMS, Issue 3 2004
M. T. Maliappis
Abstract: Knowledge is an inherently dynamic entity continuously changing and evolving. In many cases, the coexistence of different versions of the same core knowledge is a necessity. So is the availability of the proper environment and tools to deal with knowledge versioning. In this paper, a framework of knowledge versioning management is proposed and implemented dealing with hybrid knowledge representation models using frames and rules. This framework facilitates knowledge version handling and maintenance, improving, in parallel, knowledge sharing and reuse. Knowledge components are stored in a set of tables and handled as data under the auspices of a database management system. The proper structure of tables and their relationships allows the creation of independent knowledge modules. Several knowledge modules can be assembled to construct higher level modules, which finally form versions of knowledge. Corresponding knowledge base versions consist of several knowledge modules easy to handle and process in various application areas. The proposed framework has been implemented and thoroughly examined in an application area of great importance, such as pest management. [source]

HAEdb: A novel interactive, locus-specific mutation database for the C1 inhibitor gene,

HUMAN MUTATION, Issue 1 2005
Lajos Kalmár
Abstract Hereditary angioneurotic edema (HAE) is an autosomal dominant disorder characterized by episodic local subcutaneous and submucosal edema and is caused by the deficiency of the activated C1 esterase inhibitor protein (C1-INH or C1INH; approved gene symbol SERPING1). Published C1-INH mutations are represented in large universal databases (e.g., OMIM, HGMD), but these databases update their data rather infrequently, they are not interactive, and they do not allow searches according to different criteria. The HAEdb, a C1-INH gene mutation database (http://hae.biomembrane.hu) was created to contribute to the following expectations: 1) help the comprehensive collection of information on genetic alterations of the C1-INH gene; 2) create a database in which data can be searched and compared according to several flexible criteria; and 3) provide additional help in new mutation identification. The website uses MySQL, an open-source, multithreaded, relational database management system. The user-friendly graphical interface was written in the PHP web programming language. The website consists of two main parts, the freely browsable search function, and the password-protected data deposition function. Mutations of the C1-INH gene are divided in two parts: gross mutations involving DNA fragments >1 kb, and micro mutations encompassing all non-gross mutations. Several attributes (e.g., affected exon, molecular consequence, family history) are collected for each mutation in a standardized form. This database may facilitate future comprehensive analyses of C1-INH mutations and also provide regular help for molecular diagnostic testing of HAE patients in different centers. Hum Mutat 25:1,5, 2005. © 2004 Wiley-Liss, Inc. [source]

Measuring and modelling the performance of a parallel ODMG compliant object database server

CONCURRENCY AND COMPUTATION: PRACTICE & EXPERIENCE, Issue 1 2006
Sandra de F. Mendes Sampaio
Abstract Object database management systems (ODBMSs) are now established as the database management technology of choice for a range of challenging data intensive applications. Furthermore, the applications associated with object databases typically have stringent performance requirements, and some are associated with very large data sets. An important feature for the performance of object databases is the speed at which relationships can be explored. In queries, this depends on the effectiveness of different join algorithms into which queries that follow relationships can be compiled. This paper presents a performance evaluation of the Polar parallel object database system, focusing in particular on the performance of parallel join algorithms. Polar is a parallel, shared-nothing implementation of the Object Database Management Group (ODMG) standard for object databases. The paper presents an empirical evaluation of queries expressed in the ODMG Query Language (OQL), as well as a cost model for the parallel algebra that is used to evaluate OQL queries. The cost model is validated against the empirical results for a collection of queries using four different join algorithms, one that is value based and three that are pointer based. Copyright © 2005 John Wiley & Sons, Ltd. [source]

Development of applications with fuzzy objects in modern programming platforms

INTERNATIONAL JOURNAL OF INTELLIGENT SYSTEMS, Issue 11 2005
F. Berzal
Most of the applications that are currently being developed use object-oriented programming technology, as is the case of those applications built with the Java or C, languages. Data management has not kept out of this trend, and object-oriented and object-relational database management systems have arisen as a result. Soft-computing applications need to manage imperfect data and Fuzzy Sets Theory has proven to be a good choice for accomplishing the task of imperfect data management. In this article we present a framework that allows the programmers of soft-computing applications to deal with fuzzy objects in a transparent and intuitive way. This framework can be used to develop an object-oriented code in those systems that conform with current hip object-oriented languages, so that imperfect information can be managed. © 2005 Wiley Periodicals, Inc. Int J Int Syst 20: 1117,1136, 2005. [source]

A multimodal, multidimensional atlas of the C57BL/6J mouse brain

JOURNAL OF ANATOMY, Issue 2 2004
Allan MacKenzie-Graham
Abstract Strains of mice, through breeding or the disruption of normal genetic pathways, are widely used to model human diseases. Atlases are an invaluable aid in understanding the impact of such manipulations by providing a standard for comparison. We have developed a digital atlas of the adult C57BL/6J mouse brain as a comprehensive framework for storing and accessing the myriad types of information about the mouse brain. Our implementation was constructed using several different imaging techniques: magnetic resonance microscopy, blockface imaging, classical histology and immunohistochemistry. Along with raw and annotated images, it contains database management systems and a set of tools for comparing information from different techniques. The framework allows facile correlation of results from different animals, investigators or laboratories by establishing a canonical representation of the mouse brain and providing the tools for the insertion of independent data into the same space as the atlas. This tool will aid in managing the increasingly complex and voluminous amounts of information about the mammalian brain. It provides a framework that encompasses genetic information in the context of anatomical imaging and holds tremendous promise for producing new insights into the relationship between genotype and phenotype. We describe a suite of tools that enables the independent entry of other types of data, facile retrieval of information and straightforward display of images. Thus, the atlas becomes a framework for managing complex genetic and epigenetic information about the mouse brain. The atlas and associated tools may be accessed at http://www.loni.ucla.edu/MAP. [source]