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Complementary Sets (complementary + set)
Selected AbstractsThe major- and trace-element whole-rock fingerprints of Egyptian basalts and the provenance of Egyptian artefactsGEOARCHAEOLOGY: AN INTERNATIONAL JOURNAL, Issue 7 2001John D. Greenough Discrimination diagrams have been developed that source Egyptian basaltic artefacts using whole-rock major element geochemistry. These include K2O versus SiO2, TiO2 and P2O5 against MgO/Fe2O3t (total Fe as Fe2O3), and a discriminant analysis diagram using SiO2, Fe2O3t, CaO, and MnO. A complementary set of diagrams uses easily obtained trace element data (Nb/Y versus Zr/Nb; Zr [ppm] versus Rb/Sr; TiO2 [wt % volatile free] versus V; and Cr [ppm] versus Zr/Y) to determine the bedrock sources. These diagrams have been applied to seven First Dynasty basalt vessels (Abydos), two Fourth Dynasty basalt paving stones (Khufu's funerary temple, Giza), and two Fifth Dynasty paving stones (Sahure's complex, Abu Sir). They show that the bedrock source for all the artefacts was the Haddadin flow in northern Egypt. Multidimensional scaling and cluster analysis applied to the whole-rock data (major elements and trace elements together) and previously published mineral fingerprinting studies confirm these results. Comparing mineral versus whole-rock fingerprinting techniques, a major advantage of the former is the small sample size required (0.001 g compared to , 0.1 g). Analytical costs are similar for both methods assuming that a comparison (bedrock) database can be assembled from the literature. For most archaeological problems, a whole-rock bedrock database is more likely to exist than a mineral database, and whole-rock analyses on artefacts will generally be easier to obtain than mineral analyses. Whole-rock fingerprinting may be more sensitive than mineral-based fingerprinting. Thus, if sample quantity is not an issue, whole-rock analysis may have a slight cost, convenience, and technical advantage over mineral-based methods. Our results also emphasize that the Egyptians cherished their Haddadin basalt flow and used it extensively and exclusively for manufacturing basalt vessels and paving stones for at least 600 years (,3150 B.C. to 2500 B.C., approximate ages of the vessels and Abu Sir paving stones, respectively). © 2001 John Wiley & Sons, Inc. [source] THE MESOZOIC RADIATION OF EUKARYOTIC ALGAE: THE PORTABLE PLASTID HYPOTHESIS,JOURNAL OF PHYCOLOGY, Issue 2 2003Daniel Grzebyk Although all chloroplasts appear to have been derived from a common ancestor, a major schism occurred early in the evolution of eukaryotic algae that gave rise to red and green photoautotrophic lineages. In Paleozoic and earlier times, the fossil record suggests that oceanic eukaryotic phytoplankton were dominated by the green (chl b -containing) algal line. However, following the end-Permian extinction, a diverse group of eukaryotic phytoplankton evolved from secondary symbiotic associations in the red (chl c -containing) line and subsequently rose to ecological prominence. In the contemporary oceans, red eukaryotic phytoplankton taxa continue to dominate marine pelagic food webs, whereas the green line is relegated to comparatively minor ecological and biogeochemical roles. To help elucidate why the oceans are not dominated by green taxa, we analyzed and compared whole plastid genomes in both the red and green lineages. Our results suggest that whereas all algal plastids retain a core set of genes, red plastids retain a complementary set of genes that potentially confer more capacity to autonomously express proteins regulating oxygenic photosynthetic and energy transduction pathways. We hypothesize that specific gene losses in the primary endosymbiotic green plastid reduced its portability for subsequent symbiotic associations. This corollary of the plastid "enslavement" hypothesis may have limited subsequent evolutionary advances in the green lineage while simultaneously providing a competitive advantage to the red lineage. [source] Constraints on the dense matter equation of state from the measurements of PSR J0737,3039A moment of inertia and PSR J0751+1807 massMONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, Issue 2 2005M. Bejger ABSTRACT The moment of inertia of the pulsar A in the neutron star binary J0737,3039 will soon be measurable through detailed measurements of the periastron advance. We present the calculation of the moment of inertia of neutron stars with the masses of the components of the binary J0737,3039 for a broad range of equations of state of dense matter, and we discuss the implications of such measurement for constraining the equation of state. An observational determination of the moment of inertia of the pulsar A in J0737,3039 with the accuracy of 10 per cent will narrow down considerably the range of viable equations of state. We also show that limits on the maximal mass of a neutron star provide a complementary set of constraints on the properties of dense nuclear matter. [source] Complementary representation and zones of ecological transitionECOLOGY LETTERS, Issue 1 2001K.J. Gaston Minimum complementary sets of sites that represent each species at least once have been argued to provide a nominal core reserve network and the starting point for regional conservation programs. However, this approach may be inadequate if there is a tendency to represent several species at marginal areas within their ranges, which may occur if high efficiency results from preferential selection of sites in areas of ecological transition. Here we use data on the distributions of birds in South Africa and Lesotho to explore this idea. We found that for five measures that are expected to reflect the location of areas of ecological transition, complementary sets tend to select higher values of these measures than expected by chance. We recommend that methods for the identification of priority areas for conservation that incorporate viability concerns be preferred to minimum representation sets, even if this results in more costly reserve networks. [source] Improving the design and management of forest strips in human-dominated tropical landscapes: a field test on Amazonian dung beetlesJOURNAL OF APPLIED ECOLOGY, Issue 4 2010Jos Barlow Summary 1.,The future of tropical forest species depends in part on their ability to survive in human-modified landscapes. Forest strips present a priority area for biodiversity research because they are a common feature of many managed landscapes, are often afforded a high level of legal protection, and can provide a cost-effective and politically acceptable conservation strategy. 2.,Despite the potential conservation benefits that could be provided by forest strips, ecologists currently lack sufficient evidence to inform policy and guide their design and management. 3.,We used a quasi-experimental landscape in the Brazilian Amazon to test the importance of four management-relevant variables (forest type, isolation distance, forest structure, and large mammal activity) on the potential biodiversity conservation value of narrow forest strips for dung beetles. 4.,Information-theoretic model selection based on AICc revealed strong support for the influence of large mammal activity and forest type on dung beetle abundance; isolation distance on species richness; and forest structure on the relative abundance of matrix-tolerant species. Multi-dimensional scaling showed a strong influence of forest type and isolation on community composition and structure, with riparian and dry-land strips having complementary sets of species. 5.,Synthesis and applications. To enhance the conservation value and ecological integrity of forest strips in human-modified landscapes we recommend that strip design considers both isolation distance and whether or not the strips encompass perennial streams. In addition, we identify the maintenance of forest structure and the protection of large mammal populations as being crucially important for conserving forest dung beetle communities. [source] Environmental factors and survival strategies of annual plant species in the Negev Desert, IsraelPLANT SPECIES BIOLOGY, Issue 2 2000Yitzchak Gutterman Abstract Several environmental factors have pronounced influences on the complementary sets of survival strategies, at different stages of the plant life cycle, of some of the most common annual plants in the Negev Desert, Israel. Plasticity of seed germination may spread germination over time and thus reduce the risk to species survival. This plasticity may be affected by day length during seed development and maturation and by position of seeds on mother plants. Post-seed maturation dry storage temperatures may affect the duration of after-ripening. The tiny, dust-like seeds produced by some plants that are dispersed by wind after maturation may escape massive seed predation and remain in large seed banks in the soil. Seeds of other species are protected in lignified structures in aerial seed banks on dead, dry, lignified mother plants. Seed dispersal strategies from these aerial seed banks by rain may also prevent massive seed collection by animals. The ,cautious' or ,opportunistic' germination strategy and seedling drought tolerance may increase seedling survival in many of the plant species under the unpredictable amounts and distribution of rain in these desert areas. Factors such as amount of rain, temperature, relative humidity, time of the beginning of soil wetting (day or night), seed size and history and the depth of seeds in the soil may affect germination percentages. Day length and soil water content during plant development may have a pronounced influence on plant age at first flowering, seed yield and plant life span. [source] Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO Plasma Proteome ProjectPROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 13 2005Xiaohai Li Abstract Based on the same HUPO reference specimen (C1-serum) with the six proteins of highest abundance depleted by immunoaffinity chromatography, we have compared five proteomics approaches, which were (1) intact protein fractionation by anion-exchange chromatography followed by 2-DE-MALDI-TOF-MS/MS for protein identification (2-DE strategy); (2) intact protein fractionation by 2-D HPLC followed by tryptic digestion of each fraction and microcapillary RP-HPLC/microESI-MS/MS identification (protein 2-D HPLC fractionation strategy); (3) protein digestion followed by automated online microcapillary 2-D HPLC (strong cation-exchange chromatography (SCX)-RPC) with IT microESI-MS/MS; (online shotgun strategy); (4) same as (3) with the SCX step performed offline (offline shotgun strategy) and (5) same as (4) with the SCX fractions reanalysed by optimised nanoRP-HPLC-nanoESI-MS/MS (offline shotgun-nanospray strategy). All five approaches yielded complementary sets of protein identifications. The total number of unique proteins identified by each of these five approaches was (1) 78, (2) 179, (3) 131, (4) 224 and (5) 330 respectively. In all, 560 unique proteins were identified. One hundred and sixty-five proteins were identified through two or more peptides, which could be considered a high-confidence identification. Only 37 proteins were identified by all five approaches. The 2-DE approach yielded more information on the pI -altered isoforms of some serum proteins and the relative abundance of identified proteins. The protein prefractionation strategy slightly improved the capacity to detect proteins of lower abundance. Optimising the separation at the peptide level and improving the detection sensitivity of ESI-MS/MS were more effective than fractionation of intact proteins in increasing the total number of proteins identified. Overall, electrophoresis and chromatography, coupled respectively with MALDI-TOF/TOF-MS and ESI-MS/MS, identified complementary sets of serum proteins. [source] Visualization of protein interactions in living plant cells using bimolecular fluorescence complementationTHE PLANT JOURNAL, Issue 3 2004Michael Walter Summary Dynamic networks of protein,protein interactions regulate numerous cellular processes and determine the ability to respond appropriately to environmental stimuli. However, the investigation of protein complex formation in living plant cells by methods such as fluorescence resonance energy transfer has remained experimentally difficult, time consuming and requires sophisticated technical equipment. Here, we report the implementation of a bimolecular fluorescence complementation (BiFC) technique for visualization of protein,protein interactions in plant cells. This approach relies on the formation of a fluorescent complex by two non-fluorescent fragments of the yellow fluorescent protein brought together by association of interacting proteins fused to these fragments (Hu et al., 2002). To enable BiFC analyses in plant cells, we generated different complementary sets of expression vectors, which enable protein interaction studies in transiently or stably transformed cells. These vectors were used to investigate and visualize homodimerization of the basic leucine zipper (bZIP) transcription factor bZIP63 and the zinc finger protein lesion simulating disease 1 (LSD1) from Arabidopsis as well as the dimer formation of the tobacco 14-3-3 protein T14-3c. The interaction analyses of these model proteins established the feasibility of BiFC analyses for efficient visualization of structurally distinct proteins in different cellular compartments. Our investigations revealed a remarkable signal fluorescence intensity of interacting protein complexes as well as a high reproducibility and technical simplicity of the method in different plant systems. Consequently, the BiFC approach should significantly facilitate the visualization of the subcellular sites of protein interactions under conditions that closely reflect the normal physiological environment. [source] | ||||||||||