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Competitive Exclusion (competitive + exclusion)
Selected AbstractsCompetitive exclusion as a mode of action of a novel Bacillus cereus aquaculture biological agentLETTERS IN APPLIED MICROBIOLOGY, Issue 6 2010R. Lalloo Abstract Aims:, To determine the contribution of potential modes of action of a Bacillus cereus aquaculture biological control agent in inhibition of the fish pathogen, Aeromonas hydrophila. Methods and Results:, When B. cereus was tested in plate well inhibition studies, no production of antimicrobial compounds was detected. Bacillus cereus had a high growth rate (0·96 h,1), whereas Aer. hydrophila concentration decreased by c. 70% in co-culture experiments. In nutrient limitation studies, B. cereus had a significantly higher growth rate when cultured under glucose (P < 0·05) and iron (P < 0·01) limitation in comparison with Aer. hydrophila. Bacillus cereus glucose (0·30 g l,1 h,1) and iron (0·60 mg l,1 h,1) uptake rates were also significantly higher (P < 0·01) than the Aer. hydrophila glucose (0·14 g l,1 h,1) and iron (0·43 mg l,1 h,1) uptake rates. Iron uptake was facilitated by siderophore production shown in time profile studies where relative siderophore production was c. 60% through the late exponential and sporulation phases. Conclusions:, Competitive exclusion by higher growth rate, competition for organic carbon and iron, facilitated by siderophore production, could be identified as mechanisms of pathogen growth inhibition by B. cereus. Significance and Impact of the Study:, This study is the first elucidation of the mechanism of action of our novel B. cereus biological agent in growth attenuation of pathogenic Aer. hydrophila. This study enhances the application knowledge and attractiveness for adoption of B. cereus NRRL 100132 for exploitation in aquaculture. [source] A competitive coexistence principle?OIKOS, Issue 10 2009Cathy Neill Competitive exclusion , n species cannot coexist on fewer than n limiting resources in a constant and isolated environment , has been a central ecological principle for the past century. Since empirical studies cannot universally demonstrate exclusion, this principle has mainly relied on mathematical proofs. Here we investigate the predictions of a new approach to derive functional responses in consumer/resource systems. Models usually describe the temporal dynamics of consumer/resource systems at a macroscopic level , i.e. at the population level. Each model may be pictured as one time-dependent macroscopic trajectory. Each macroscopic trajectory is, however, the product of many individual fates and from combinatorial considerations can be realized in many different ways at the microscopic , or individual , level. Recently it has been shown that, in systems with large enough numbers of consumer individuals and resource items, one macroscopic trajectory can be realized in many more ways than any other at the individual , or microscopic , level. Therefore, if the temporal dynamics of an ecosystem are assumed to be the outcome of only statistical mechanics , that is, chance , a single trajectory is near-certain and can be described by deterministic equations. We argue that these equations can serve as a null to model consumer-resource dynamics, and show that any number of species can coexist on a single resource in a constant, isolated environment. Competition may result in relative rarity, which may entail exclusion in finite samples of discrete individuals, but exclusion is not systematic. Beyond the coexistence/exclusion outcome, our model also predicts that the relative abundance of any two species depends simply on the ratio of their competitive abilities as computed from , and only from , their intrinsic kinetic and stoichiometric parameters. [source] BIODIVERSITY RESEARCH: Native-exotic species richness relationships across spatial scales and biotic homogenization in wetland plant communities of Illinois, USADIVERSITY AND DISTRIBUTIONS, Issue 5 2010Hua Chen Abstract Aim, To examine native-exotic species richness relationships across spatial scales and corresponding biotic homogenization in wetland plant communities. Location, Illinois, USA. Methods, We analysed the native-exotic species richness relationship for vascular plants at three spatial scales (small, 0.25 m2 of sample area; medium, 1 m2 of sample area; large, 5 m2 of sample area) in 103 wetlands across Illinois. At each scale, Spearman's correlation coefficient between native and exotic richness was calculated. We also investigated the potential for biotic homogenization by comparing all species surveyed in a wetland community (from the large sample area) with the species composition in all other wetlands using paired comparisons of their Jaccard's and Simpson's similarity indices. Results, At large and medium scales, native richness was positively correlated with exotic richness, with the strength of the correlation decreasing from the large to the medium scale; at the smallest scale, the native-exotic richness correlation was negative. The average value for homogenization indices was 0.096 and 0.168, using Jaccard's and Simpson's indices, respectively, indicating that these wetland plant communities have been homogenized because of invasion by exotic species. Main Conclusions, Our study demonstrated a clear shift from a positive to a negative native-exotic species richness relationship from larger to smaller spatial scales. The negative native-exotic richness relationship that we found is suggested to result from direct biotic interactions (competitive exclusion) between native and exotic species, whereas positive correlations likely reflect the more prominent influence of habitat heterogeneity on richness at larger scales. Our finding of homogenization at the community level extends conclusions from previous studies having found this pattern at much larger spatial scales. Furthermore, these results suggest that even while exhibiting a positive native-exotic richness relationship, community level biotas can/are still being homogenized because of exotic species invasion. [source] Opposing effects of competitive exclusion on the phylogenetic structure of communitiesECOLOGY LETTERS, Issue 9 2010Margaret M. Mayfield Ecology Letters (2010) 13: 1085,1093 Abstract Though many processes are involved in determining which species coexist and assemble into communities, competition is among the best studied. One hypothesis about competition's contribution to community assembly is that more closely related species are less likely to coexist. Though empirical evidence for this hypothesis is mixed, it remains a common assumption in certain phylogenetic approaches for inferring the effects of environmental filtering and competitive exclusion. Here, we relate modern coexistence theory to phylogenetic community assembly approaches to refine expectations for how species relatedness influences the outcome of competition. We argue that two types of species differences determine competitive exclusion with opposing effects on relatedness patterns. Importantly, this means that competition can sometimes eliminate more different and less related taxa, even when the traits underlying the relevant species differences are phylogenetically conserved. Our argument leads to a reinterpretation of the assembly processes inferred from community phylogenetic structure. [source] The myth of plant species saturationECOLOGY LETTERS, Issue 4 2008Thomas J. Stohlgren Abstract Plant species assemblages, communities or regional floras might be termed ,saturated' when additional immigrant species are unsuccessful at establishing due to competitive exclusion or other inter-specific interactions, or when the immigration of species is off-set by extirpation of species. This is clearly not the case for state, regional or national floras in the USA where colonization (i.e. invasion by exotic species) exceeds extirpation by roughly a 24 to 1 margin. We report an alarming temporal trend in plant invasions in the Pacific Northwest over the past 100 years whereby counties highest in native species richness appear increasingly invaded over time. Despite the possibility of some increased awareness and reporting of native and exotic plant species in recent decades, historical records show a significant, consistent long-term increase in exotic species (number and frequency) at county, state and regional scales in the Pacific Northwest. Here, as in other regions of the country, colonization rates by exotic species are high and extirpation rates are negligible. The rates of species accumulation in space in multi-scale vegetation plots may provide some clues to the mechanisms of the invasion process from local to national scales. [source] Facilitation can increase the phylogenetic diversity of plant communitiesECOLOGY LETTERS, Issue 11 2007Alfonso Valiente-Banuet Abstract With the advent of molecular phylogenies the assessment of community assembly processes has become a central topic in community ecology. These processes have focused almost exclusively on habitat filtering and competitive exclusion. Recent evidence, however, indicates that facilitation has been important in preserving biodiversity over evolutionary time, with recent lineages conserving the regeneration niches of older, distant lineages. Here we test whether, if facilitation among distant-related species has preserved the regeneration niche of plant lineages, this has increased the phylogenetic diversity of communities. By analyzing a large worldwide database of species, we showed that the regeneration niches were strongly conserved across evolutionary history. Likewise, a phylogenetic supertree of all species of three communities driven by facilitation showed that nurse species facilitated distantly related species and increased phylogenetic diversity. [source] Reciprocal relationships and potential feedbacks between biodiversity and disturbanceECOLOGY LETTERS, Issue 9 2007A. Randall Hughes Abstract Two major foci of ecological research involve reciprocal views of the relationship between biodiversity and disturbance: disturbance determines community diversity or diversity determines realized disturbance severity. Here, we present an initial attempt to synthesize these two approaches in order to understand whether feedbacks occur, and what their effects on patterns of diversity might be. Our review of published experiments shows that (i) disturbance severity can be both a cause and a consequence of local diversity in a wide range of ecosystems and (ii) shapes of the unidirectional relationships between diversity and disturbance can be quite variable. To explore how feedbacks between diversity and disturbance might operate to alter expected patterns of diversity in nature, we develop and then evaluate a conceptual model that decomposes the relationships into component parts, considering sequentially the effect of diversity on disturbance severity, and the effect of realized disturbance on diversity loss, subsequent recruitment, and competitive exclusion. Our model suggests that feedbacks can increase mean values of richness, decrease variability, and alter the patterns of correlation between diversity and disturbance in nature. We close by offering ideas for future research to help fill gaps in our understanding of reciprocal relationships among ecological variables like diversity and disturbance. [source] Do biotic interactions shape both sides of the humped-back model of species richness in plant communities?ECOLOGY LETTERS, Issue 7 2006Richard Michalet Abstract A humped-back relationship between species richness and community biomass has frequently been observed in plant communities, at both local and regional scales, although often improperly called a productivity,diversity relationship. Explanations for this relationship have emphasized the role of competitive exclusion, probably because at the time when the relationship was first examined, competition was considered to be the significant biotic filter structuring plant communities. However, over the last 15 years there has been a renewed interest in facilitation and this research has shown a clear link between the role of facilitation in structuring communities and both community biomass and the severity of the environment. Although facilitation may enlarge the realized niche of species and increase community richness in stressful environments, there has only been one previous attempt to revisit the humped-back model of species richness and to include facilitative processes. However, to date, no model has explored whether biotic interactions can potentially shape both sides of the humped-back model for species richness commonly detected in plant communities. Here, we propose a revision of Grime's original model that incorporates a new understanding of the role of facilitative interactions in plant communities. In this revised model, facilitation promotes diversity at medium to high environmental severity levels, by expanding the realized niche of stress-intolerant competitive species into harsh physical conditions. However, when environmental conditions become extremely severe the positive effects of the benefactors wane (as supported by recent research on facilitative interactions in extremely severe environments) and diversity is reduced. Conversely, with decreasing stress along the biomass gradient, facilitation decreases because stress-intolerant species become able to exist away from the canopy of the stress-tolerant species (as proposed by facilitation theory). At the same time competition increases for stress-tolerant species, reducing diversity in the most benign conditions (as proposed by models of competition theory). In this way our inclusion of facilitation into the classic model of plant species diversity and community biomass generates a more powerful and richer predictive framework for understanding the role of plant interactions in changing diversity. We then use our revised model to explain both the observed discrepancies between natural patterns of species richness and community biomass and the results of experimental studies of the impact of biodiversity on the productivity of herbaceous communities. It is clear that explicit consideration of concurrent changes in stress-tolerant and competitive species enhances our capacity to explain and interpret patterns in plant community diversity with respect to environmental severity. [source] Mating signal partitioning in multi-species assemblages: a null model test using frogsECOLOGY LETTERS, Issue 3 2003Andrew A. Chek Abstract Competitive partitioning of ,community' signal space has long been suggested to underlie diversification of mating signals. Selection or competitive exclusion is expected to reduce overlap of signals, minimizing destructive interference or reducing mismating. We used null models backed by simulation of type I and II error rates to test for evidence of structuring within 11 frog advertisement call assemblages. Within three assemblages, we found significant over-dispersion and regularity-of-spacing in dominant frequency and in pulse rate, consistent with a signal interference hypothesis and signal confusion hypothesis, respectively. Observed partitioning could represent signal evolution or could result from selection on assemblage composition. Most assemblages showed no acoustic partitioning possibly because: (i) partitioning is more readily apparent in female preference, calling times or sites, rather than call attributes; (ii) assemblages have not yet accommodated recently arrived species, or are compositionally unstable so that acoustic accommodation cannot occur; and (iii) evidence of partitioning is only likely where the acoustic space is densely packed. [source] Predator-released compounds, ambient temperature and competitive exclusion among differently sized Daphnia speciesFRESHWATER BIOLOGY, Issue 4 2006JACOBUS VIJVERBERG Summary 1. We studied the effects of fish water and temperature on mechanisms of competitive exclusion among two Daphnia species in flow-through microcosms. The large-bodied D. pulicaria outcompeted the medium sized D. galeata × hyalina in fish water, but not in the control treatment. Daphnia galeata × hyalina was competitively displaced 36 days earlier at 18 °C than at 12 °C. 2. It is likely that the high phosphorus content of fish water increased the nutritional value of detrital seston particles by stimulating bacterial growth. Daphnia pulicaria was presumably better able to use these as food and hence showed a more rapid somatic growth than its competitor. This led to very high density of D. pulicaria in fish water, but not in the controls. The elevated D. pulicaria density coincided with high mortality and reduced fecundity in D. galeata × hyalina, resulting in competitive displacement of the hybrid. 3. It is clear that the daphnids competed for a limiting resource, as grazing caused a strong decrease in their seston food concentration. However, interference may also have played a role, as earlier studies have shown larger Daphnia species to be dominant in this respect. The high density of large-bodied D. pulicaria in fish water may have had an allelopathic effect on the hybrid. Our data are inconclusive with respect to whether the reached seston concentration was below the threshold resource level (R*) of the hybrid, where population growth rate and mortality exactly balance, as it would be set in the absence of interference, or whether interference actually raised the hybrid's R* to a value above this equilibrium particle concentration. 4. Our results do clearly show that fish-released compounds mediated competitive exclusion among zooplankton species and that such displacement occurred at a greatly enhanced rate at an elevated temperature. Fish may thus not only structure zooplankton communities directly through size-selective predation, but also indirectly through the compounds they release. [source] Competition in variable environments: experiments with planktonic rotifersFRESHWATER BIOLOGY, Issue 6 2002KEVIN L. KIRK 1.,In a constant environment, competition often tends to reduce species diversity. However, several theories predict that temporal variation in the environment can slow competitive exclusion and allow competing species to coexist. This study reports on laboratory competition experiments in which two pairs of planktonic rotifer species competed for a phytoplankton resource under different conditions of temporal variability in resource supply. 2.,For both species pairs, Keratella cochlearis dominated under all conditions of temporal variability, and the other species (Brachionus calyciflorus or Synchaeta sp.) almost always went extinct. Increasing temporal variation in resource supply slowed competitive exclusion but did not change competitive outcome or allow coexistence. 3.,Rotifers show a gleaner,opportunist trade-off, because gleaner species have low threshold resource levels (R*) and low maximum population growth rates, while opportunist species have the opposite characteristics. In the competition experiments, the gleaner always won and the opportunists always lost. Thus, a gleaner,opportunist trade-off was not sufficient to facilitate coexistence under conditions of resource variability. Instead, the winning species had both the lowest R* and the greatest ability to store resources and ration their use during times of extreme resource scarcity. [source] What determines the relationship between plant diversity and habitat productivity?GLOBAL ECOLOGY, Issue 6 2008Martin Zobel ABSTRACT The relationship between biodiversity and habitat productivity has been a fundamental topic in ecology. Although the relationship between these parameters may exhibit different shapes, the unimodal shape has been frequently encountered. The decrease in diversity at high productivity has usually been attributed to competitive exclusion. We suggest that evolutionary history and dispersal limitation may be even more important in shaping the diversity,productivity relationship. On a global scale, unimodal diversity,productivity relationships dominate in temperate regions, whereas positive relationships are more common in the tropics. This difference can be accounted for by contrasting evolutionary history. Temperate regions have smaller species pools for productive habitats since these habitats have been scarce historically for speciation, while the opposite is true for the tropics. In addition, dispersal within a region may limit diversity either due to the lack of dispersal syndromes at low productivity or the low number of diaspores at high productivity. Thereafter, biotic interactions (competition and facilitation) can shape the relationship. All these processes can act independently or concurrently. We recommend that the common approach to examining empirical diversity,environmental relationships should start with the role of large-scale processes such as evolutionary history and dispersal limitation, followed by influences associated with ecological interactions. [source] Why does the unimodal species richness,productivity relationship not apply to woody species: a lack of clonality or a legacy of tropical evolutionary history?GLOBAL ECOLOGY, Issue 3 2008Lauri Laanisto ABSTRACT Aim, To study how differences in species richness patterns of woody and herbaceous plants may be influenced by ecological and evolutionary factors. Unimodal species richness,productivity relationships (SRPRs) have been of interest to ecologists since they were first described three decades ago for British herbaceous vegetation by J. P. Grime. The decrease in richness at high productivity may be due to competitive exclusion of subordinate species, or diverse factors related to evolution and dispersal. Unimodal SRPRs are most often reported for plants, but there are exceptions. For example, unimodal SRPRs are common in the temperate zone but not in the tropics. Similarly, woody species and forest communities in the Northern Hemisphere do not tend to show unimodal SRPRs. Location, Global. Methods, We used data from the literature to test whether a unimodal SRPR applies to woody species and forest communities on a global scale. We explored whether the shape of SRPRs may be related to the lack of clonality in woody species (which may prevent their being competitively superior), or the legacy of evolutionary history (most temperate woody species originate from tropical lineages, and due to niche conservatism they may still demonstrate ,tropical patterns'). We used case studies that reported the names of the dominant or most abundant species for productive sites. Results, Woody species were indeed less clonal than herbaceous species. Both clonality and the temperate evolutionary background of dominating species were associated with unimodality in SRPRs, with woodiness modifying the clonality effect. Main conclusions, The unimodal SRPR has been common in the ecological literature because most such studies originate from temperate herbaceous communities with many clonal species. Consequently, both evolutionary and ecological factors may influence species richness patterns. [source] Positive and negative effects of livestock grazing on plant diversity of Mongolian nomadic pasturelands along a slope with soil moisture gradientGRASSLAND SCIENCE, Issue 3 2009Noboru Fujita Abstract To examine different effects of herbivorous large mammals' grazing pressure on plant diversity along a slope in a Mongolian nomadic pasture, we compared species richness, Simpson's index of diversity, and the total plant coverage of plants between protected pasture from livestock grazing and grazed pasture on the near ridge, upper slope, lower slope, foot slope and valley bottom. The species richness and Simpson's index of diversity decreased and the total coverage increased downwardly with increase in pasture soil moisture along the slope. The species richness of the protected pasture decreased, changed little, and increased on the near ridge and the upper slope, the lower slope and the foot slope, and the valley bottom, respectively. Simpson's index of diversity of the protected pasture decreased compared with the grazed pasture only on the valley bottom. The total coverage became lower in the grazed pasture. As the reason for our results, we discuss positive and negative effects of livestock grazing on the species diversity of plants. The positive effect is shown on the valley bottom, where soil moisture and plant growth becomes high with the total coverage over 100%, due to relaxing indirectly the competitive exclusion among plants due to the grazing of dominant plants. The negative effect is obtained on the near ridge and the upper slope, where the soil moisture and the plant growth are low, because of elimination of some plants from the pasture by direct grazing damage. [source] Probiotics and the management of inflammatory bowel diseaseINFLAMMATORY BOWEL DISEASES, Issue 3 2004FRCPC, Richard N. Fedorak MD Abstract The demonstration that immune and epithelial cells can discriminate between different microbial species has extended our understanding of the actions of probiotics beyond simple barrier and antimicrobial concepts. Several probiotic mechanisms of action, relative to inflammatory bowel disease, have been elucidated: (1) competitive exclusion, whereby probiotics compete with microbial pathogens for a limited number of receptors present on the surface epithelium; (2) immunomodulation and/or stimulation of an immune response of gut-associated lymphoid and epithelial cells; (3) antimicrobial activity and suppression of pathogen growth; (4) enhancement of barrier function; and (5) induction of T cell apoptosis in the mucosal immune compartment. The unraveling of these mechanisms of action has led to new support for the use of probiotics in the management of clinical inflammatory bowel disease. Though level 1 evidence now supports the therapeutic use of probiotics in the treatment of postoperative pouchitis, only levels 2 and 3 evidence is currently available in support of the use of probiotics in the treatment of ulcerative colitis and Crohn's disease. Nevertheless, one significant and consistent finding has emerged during the course of research in the past year: not all probiotic bacteria have similar therapeutic effects. Rigorously designed, controlled clinical trials are vital to investigate the unresolved issues related to efficacy, dose, duration of use, single or multi-strain formulation, and the concomitant use of prebiotics, synbiotics, or antibiotics. [source] Insight into diversity, body size and morphological evolution from the largest Early Cretaceous enantiornithine birdJOURNAL OF ANATOMY, Issue 5 2008Zhonghe Zhou Abstract Most of Mesozoic bird diversity comprises species that are part of one of two major lineages, namely Ornithurae, including living birds, and Enantiornithes, a major radiation traditionally referred to as ,opposite birds'. Here we report the largest Early Cretaceous enantiornithine bird from north-east China, which provides evidence that basal members of Enantiornithes share more morphologies with ornithurine birds than previously recognized. Morphological evolution in these two groups has been thought to be largely parallel, with derived members of Enantiornithes convergent on the ,advanced' flight capabilities of ornithurine birds. The presence of an array of morphologies previously thought to be derived within ornithurine and enantiornithine birds in a basal enantiornithine species provides evidence of the complex character evolution in these two major lineages. The cranial morphology of the new specimen is among the best preserved for Mesozoic avians. The new species extends the size range known for Early Cretaceous Enantiornithes significantly and provides evidence of forelimb to hind limb proportions distinct from all other known members of the clade. As such, it sheds new light on avian body size evolution and diversity, and allows a re-evaluation of a previously proposed hypothesis of competitive exclusion among Early Cretaceous avian clades. [source] Two-species asymmetric competition: effects of age structure on intra- and interspecific interactionsJOURNAL OF ANIMAL ECOLOGY, Issue 1 2007TOM C. CAMERON Summary 1The patterns of density-dependent resource competition and the mechanisms leading to competitive exclusion in an experimental two-species insect age-structured interaction were investigated. 2The modes of competition (scramble or contest) and strength of competition (under- to overcompensatory) operating within and between the stages of the two species was found to be influenced by total competitor density, the age structure of the competitor community and whether competition is between stages of single or two species. 3The effect of imposed resource limitation on survival was found to be asymmetric between stages and species. Environments supporting both dominant and subordinate competitors were found to increase survival of subordinate competitors at lower total competitor densities. Competitive environments during development within individual stage cohorts (i.e. small or large larvae), differed from the competitive environment in lumped age classes (i.e. development from egg,pupae). 4Competition within mixed-age, stage or species cohorts, when compared with uniform-aged or species cohorts, altered the position of a competitive environment on the scramble-contest spectrum. In some cases the competitive environment switched from undercompensatory contest to overcompensatory scramble competition. 5Such switching modes of competition suggest that the relative importance of the mechanisms regulating single-species population dynamics (i.e. resource competition) may change when organisms are embedded within a wider community. [source] Habitat differentiation within the large-carnivore community of Norway's multiple-use landscapesJOURNAL OF APPLIED ECOLOGY, Issue 5 2008Roel May Summary 1The re-establishment of large carnivores in Norway has led to increased conflicts and the adoption of regional zoning for these predators. When planning the future distribution of large carnivores, it is important to consider details of their potential habitat tolerances and strength of inter-specific differentiation. We studied differentiation in habitat and kill sites within the large-carnivore community of south-eastern Norway. 2We compared habitat selection of the brown bear Ursus arctos L., Eurasian lynx Lynx lynx L., wolf Canis lupus L. and wolverine Gulo gulo L., based on radio-tracking data. Differences in kill site locations were explored using locations of documented predator-killed sheep Ovis aries L. We modelled each species' selection for, and differentiation in, habitat and kill sites on a landscape scale using resource selection functions and multinomial logistic regression. Based on projected probability of occurrence maps, we estimated continuous patches of habitat within the study area. 3Although bears, lynx, wolves and wolverines had overlapping distributions, we found a clear differentiation for all four species in both habitat and kill sites. The presence of bears, wolves and lynx was generally associated with rugged, forested areas at lower elevations, whereas wolverines selected rugged terrain at higher elevations. Some degree of sympatry was possible in over 40% of the study area, although only 1·5% could hold all four large carnivores together. 4Synthesis and applications. A geographically differentiated management policy has been adopted in Norway, aimed at conserving viable populations of large carnivores while minimizing the potential for conflicts. Sympatry of all four carnivores will be most successful if regional zones are established of adequate size spanning an elevational gradient. High prey densities, low carnivore densities, low dietary overlap and scavenging opportunities have most probably led to reduced competitive exclusion. Although regional sympatry enhances the conservation of an intact guild of large carnivores, it may well increase conflict levels and resistance to carnivore conservation locally. [source] Phenotypic and genotypic characterization of competitive exclusion products for use in poultryJOURNAL OF APPLIED MICROBIOLOGY, Issue 6 2003R.D. Wagner Abstract Aims: Phenotypic and genotypic bacteria identification methods were compared for their efficacy in determining the composition of competitive exclusion (CE) products. Methods and Results: Phenotypic methods used for bacterial identification were fatty acid methyl ester profiles, biochemical assays and carbohydrate utilization profiles. Genotypic methods were MicroSeq16S rRNA sequence analysis and BLAST searches of the GenBank sequence database. Agreement between phenotypic and genotypic methods for identification of bacteria isolated from the Preempt CE product was 20%. A defined test mixture of bacteria was identified to the species level 100% by BLAST analysis, 64% by MicroSeq and 36% by phenotypic techniques. Conclusions: The wide range of facultative and obligate anaerobic bacteria present in a CE product are more accurately identified with 16S rRNA sequence analyses than with phenotypic identification techniques. Significance and Impact of the Study: These results will provide guidelines for manufacturers of CE products to submit more reliable product information for market approval by regulatory agencies. [source] Inter-ocean dispersal is an important mechanism in the zoogeography of hakes (Pisces: Merluccius spp.)JOURNAL OF BIOGEOGRAPHY, Issue 6 2001W. Stewart Grant Aim To present new genetic data and to review available published genetic data that bear on the phylogeny of hakes in the genus Merluccius. To construct a zoogeographical model from a summary phylogenetic tree with dated nodes. To search for an explanation of antitropical distributions in hakes. To assess peripheral isolate, centrifugal and vicariance models of speciation in view of the molecular phylogeny and zoogeography of hakes. Locations Northern and southern Atlantic Ocean, eastern Pacific Ocean, South Pacific Ocean. Methods Electrophoretic analysis of 20 allozyme loci in 10 species of hakes. Phylogenetic tree construction with parsimony and bootstrap methods. Reanalysis of previous genetic data. Analysis of zoogeographical patterns with geographical distributions of molecular genetic markers. Results Phylogenetic analyses of new and previous allozyme data and previous mitochondrial DNA data indicate a deep genetic partition between Old- and New-World hakes with genetic distances corresponding to 10,15 Myr of separation. This time marks a widening rift between Europe and North America and a rapid drop in ocean temperatures that subdivided an ancestral population of North Atlantic hake. Two Old-World clades spanning the equator include pairs of sister taxa separated by tropical waters. Divergence times between these pairs of sister-taxa variously date to the early Pliocene and late Pleistocene. Amongst New-World hakes, pairs of sister taxa are separated by equatorial waters, by the Southern Ocean, and by the Panama Isthmus. These genetic separations reflect isolation by the rise of the Isthmus 3,4 Ma and by Pliocene and Pleistocene dispersals. Pairs of species occurring in sympatry or parapatry in six regions do not reflect sister-species relationships, but appear to reflect allopatric divergence and back dispersals of descendent species. Some geographically isolated regional populations originating within the last few hundreds of thousands of years merit subspecies designations. Conclusions Vicariance from tectonic movement of continental plates or ridge formation cannot account for the disjunct distributions of most hake sister taxa. Molecular genetic divergences place the origin of most hake species diversity in the last 2,3 Myr, a period of negligible tectonic activity. Distributions of many hake species appear to have resulted from dispersals and back dispersals across both warm equatorial waters and cool waters in the Southern Ocean, driven by oscillations in climate and ocean temperatures. Genetic and ecological divergence prevents hybridization and competitive exclusion between sympatric species pairs in six regions. Sister-taxa relationships and estimates of divergence are consistent with the modified peripheral isolate model of speciation in which vicariances, range expansions and contractions, dispersals and founder events lead to isolated populations that subsequently diverge to form new species. [source] Environmental parameters and anthropogenic effects predicting the spatial distribution of wild ungulates in the Akagera savannah ecosystemAFRICAN JOURNAL OF ECOLOGY, Issue 4 2009Christiane Averbeck Abstract Savannah areas affected by human activities such as livestock keeping and agriculture are often characterized by shifts in landscape structuring, with a predominance of few(er) habitat types. This is typically accompanied by pronounced changes in the communities of ungulates. The aim of this study was to find out whether shifts in ungulate communities in Lake Mburo National Park (LMNP) are primarily predicted by an alteration in the composition of the preferred habitat types or if more complex interactions between habitat changes and the prevalence of ungulates occur. Monthly road counts were used to establish the number of eleven ungulate species in LMNP and adjacent unprotected Ankole Ranching Scheme. The common duiker (Sylvicapra grimmia campbelliae Gray, 1843) was found in more abundance in disturbed areas, while showing a significant change in habitat use. Common duiker tended to use the vegetation type otherwise used by the bushbuck (Tragelaphus scriptus dama Neumann, 1902). Our results support the claim that the occurrence of ungulates is not only directly affected by the availability of ,suitable' habitats, but behavioural plasticity and competitive exclusion also need to be considered. Résumé Les zones de savane touchées par des activités humaines telles que l'élevage de bétail et l'agriculture se caractérisent souvent par des évolutions de la structure du paysage, avec une prédominance d'un (plus) petit nombre de types d'habitats. Cela s'accompagne généralement de changements marqués chez les communautés d'ongulés. Le but de cette étude était de voir si l'on peut s'attendre à des évolutions des communautés d'ongulés dans le Parc National du Lac Mburo du seul fait d'une altération de la composition des types d'habitats préférés ou s'il y a des interactions plus complexes entre les changements de l'habitat et la prévalence des ongulés. Nous avons eu recours à des comptages routiers mensuels pour établir le nombre d'ongulés de onze espèces dans le Parc National du Lac Mburo et dans l'Ankole Ranching Scheme voisin, nonprotégé. Le sylvicapre de Grimm (Sylvicapra grimmia campbelliae Gray, 1843) fut observé en plus grand nombre dans les zones perturbées, et manifestait un changement significatif de l'utilisation de son habitat. Cette espèce avait tendance à utiliser le type de végétation normalement utilisé par le bushbuck (Tragelaphus scriptus dama Neumann, 1902). Nos résultats soutiennent l'affirmation selon laquelle la présence des ongulés n'est pas directement affectée seulement par la disponibilité d'habitats « appropriés », mais qu'il faut aussi envisager une certaine plasticité comportementale et des compétitions menant à des exclusions. [source] Genetic identity of interspecific neighbours mediates plant responses to competition and environmental variation in a species-rich grasslandJOURNAL OF ECOLOGY, Issue 5 2007JASON D. FRIDLEY Summary 1Although outbreeding populations of many grassland plants exhibit substantial genetic and phenotypic variation at fine spatial scales (< 100 m2), the implications of local genetic diversity for community structure are poorly understood. Genetic diversity could contribute to local species diversity by mediating the effects of competition between species and by enhancing species persistence in the face of environmental variation. 2We assayed the performance of three genotypes each of a dominant tussock grass (Koeleria macrantha [Ledeb.] J.A. Schultes) and dominant sedge (Carex caryophyllea Lat.) derived from a single 10 × 10 m quadrat within a limestone grassland in Derbyshire, UK. Genotypes were grown in monoculture and grass,sedge mixtures of different genetic composition in two environments of contrasting fertility. Species mixtures also included one genotype of the subordinate forb Campanula rotundifolia L. 3When grown without neighbours, intraspecific genotypes responded similarly to environmental treatments. One genotype of the sedge performed worse in both environments than the other two sedge genotypes. 4When grown in species mixtures, genotype performance was significantly influenced by the genetic identity of the neighbouring species for both the sedge and the grass. At high fertility, differential genotype performance was not sufficient to alter the expectation of competitive exclusion of the sedge by the grass. However, at low fertility, the competitive dominant depended on the genetic identity of both the grass and the sedge. In addition, each genotype of the grass performed best next to a different genotype of the sedge, and the identity of the best genotype pairings switched with environment. 5Performance of a single genotype of the subordinate Campanula was not predictable by fertility alone, but by how fertility interacted with different neighbouring genotypes of both the grass and the sedge. 6Results support the hypothesis that the genetic identity of interspecific neighbours influences plant performance in multispecies assemblages and mediates species' responses to environmental variation. Such interactions could be a key factor in the contribution of local intraspecific genetic diversity to species diversity. [source] Reconciling plant strategy theories of Grime and TilmanJOURNAL OF ECOLOGY, Issue 6 2005JOSEPH M. CRAINE Summary 1The theories of Grime and Tilman are ambitious attempts to unify disparate theories regarding the construction of plants, their interaction with the environment and the assembly of communities. After over two decades of parallel research, their ideas have not been reconciled, hindering progress in understanding the functioning of ecosystems. 2Grime's theories do not adequately incorporate the importance of non-heterogeneous supplies of nutrients and how these supplies are partitioned over long time scales, are inconsistent regarding the importance of disturbance in nutrient-limited habitats and need to reconsider the carbon economy of shade-tolerant plants. 3Failure to account for differences between aquatic and terrestrial systems in how resource supplies are partitioned led Tilman to develop a shifting set of theories that have become reduced in mechanistic detail over time. The most recent highlighted the reduction of nutrient concentrations in soil solution, although it can no longer be derived from any viable mechanistic model. The slow diffusion of nutrients in soils means that the reduction of average soil solution nutrient concentrations cannot explain competitive exclusion. 4Although neither theory, nor a union of the two, adequately characterizes the dynamics of terrestrial plant assemblages, the complementarity in their assumptions serve as an important foundation for future theory and research. 5Reconciling the approaches of Grime and Tilman leads to six scenarios for competition for nutrients and light, with the outcome of each depending on the ability of plants to pre-empt supplies. Under uniform supplies, pulses or patches, light competition requires leaf area dominance, while nutrient competition requires root length dominance. There are still important basic questions regarding the nature of nutrient supplies that will need to be answered, but recent research brings us closer to a unified set of theories on resource competition. [source] Breeding system, branching processes, hybrid swarm theory, and the humped-back diversity relationship as additional explanations for apparent monophyly in the Macaronesian island floraJOURNAL OF ECOLOGY, Issue 4 2005N. ELIZABETH SAUNDERS Summary 1Niche pre-emption and competitive exclusion is unsatisfactory as a sole explanation for the apparent paradox of a large number of monophyletic taxa in the Macaronesian island flora. 2Undetected hybridizations have been proposed as an additional plausible explanation. In addition, hybrid swarm theory predicts that hybridizations between invading species would promote adaptive radiation. 3We suggest that branching processes and coalescence offer yet another plausible explanation allowing for multiple colonizations of closely related taxa, which, because of their later local extinction or hybridization, would lead to apparent monophyly in the molecular record. 4The cause of such widespread radiation of a few taxa has not been explained, but may involve intermediate conditions of disturbance or productivity. This proposition has, to date, only been tested in a microbial model system, but it offers a reasonable explanation for the patterns observed in the Macaronesian flora, and perhaps in other island floras worldwide. [source] Effects of experimental canopy gaps on mangrove recruitment: lack of habitat partitioning may explain stand dominanceJOURNAL OF ECOLOGY, Issue 2 2004Peter J. Clarke Summary 1Few species of Indo-pacific mangroves co-occur at spatial scales of canopy gaps despite environmental heterogeneity and a flora that has varied physiological and morphological traits, but experiments on why such communities are species poor are uncommon. 2Lack of habitat partitioning, in concert with competitive exclusion, may explain low species richness at canopy gap scales. This study examined whether mangrove recruitment differs among species with respect to the effect of forest gap size, ground disturbance, position along an intertidal gradient and canopy membership. 3The canopy of a tropical mangrove forest in northern Australia was experimentally manipulated to create two gap sizes (50 m2 and 225 m2) in low and high intertidal forests with or without sediment disturbance. Propagules of six species, from three mangrove families, were sown into treatments and their predation, establishment, growth and survival measured for 5 years. 4All species established, and five survived, in canopy gaps in both high and low intertidal positions. Interspecific difference in establishment, growth and survival of seedlings in two intertidal positions were not closely matched to canopy membership and hence this does not explain zonation. 5No seedlings survived under the canopy and there was little evidence for shade-tolerant species. The interactions between canopy treatments and sediment disturbance that would have indicated gap partitioning were not detected. Seedling growth and survival was enhanced in large canopy gaps but there were no growth differences among species that matched canopy membership of plots. 6Most species appear to be able to recruit in canopy gaps if there is no dispersal limitation. Rather, the range of species available to fill gaps is limited because predation of propagules advantages species that are from the adjacent canopy. Lack of partitioning of resources within gaps by species may result in the exclusion of competitors that are not canopy members, further reducing coexistence. [source] Species-level selection reduces selfishness through competitive exclusionJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 4 2007D. J. RANKIN Abstract Adaptation does not necessarily lead to traits which are optimal for the population. This is because selection is often the strongest at the individual or gene level. The evolution of selfishness can lead to a ,tragedy of the commons', where traits such as aggression or social cheating reduce population size and may lead to extinction. This suggests that species-level selection will result whenever species differ in the incentive to be selfish. We explore this idea in a simple model that combines individual-level selection with ecology in two interacting species. Our model is not influenced by kin or trait-group selection. We find that individual selection in combination with competitive exclusion greatly increases the likelihood that selfish species go extinct. A simple example of this would be a vertebrate species that invests heavily into squabbles over breeding sites, which is then excluded by a species that invests more into direct reproduction. A multispecies simulation shows that these extinctions result in communities containing species that are much less selfish. Our results suggest that species-level selection and community dynamics play an important role in regulating the intensity of conflicts in natural populations. [source] Habitat associations of Sterculiaceae trees in a Bornean rain forest plotJOURNAL OF VEGETATION SCIENCE, Issue 5 2006Toshihiro Yamada Ashton (1980) Abstract. Questions: 1. Are trees in a Bornean tropical rain forest associated with a particular habitat? 2. Does the strength of habitat association with the species-specific optimal habitat increase with tree size? Location: A 52-ha plot in a mixed dipterocarp forest in a heterogeneous landscape at the Lambir Hills National Park, Sarawak, East Malaysia. Methods: Ten species from the Sterculiaceae were chosen as representative of all species in the plot, on the assumption that competition among closely related species is more stringent than that among more distantly related taxa. Their habitat associations were tested using data from a 52-ha plot by a torus-translation test. Results: The torus-translation test showed that eight out of the ten species examined had significant association with at least one habitat. We could not find negative species-habitat associations for rare species, probably due to their small sample sizes. Among four species small trees were less strongly associated with habitat than large trees, implying competitive exclusion of trees in suboptimal habitats. The other four species showed the opposite pattern, possibly owing to the smaller sample size of large trees. A habitat had a maximum of three species with which it was significantly positively associated. Conclusions: For a species to survive in population equilibrium in a landscape, habitats in which ,source' subpopulations can be sustained without subsidy from adjacent habitats are essential. Competition is most severe among related species whose source subpopulations share the same habitat. On the evidence of source subpopulations identified by positive species-habitat association, species-habitat association reduces the number of confamilial competitors. Our results therefore indicate that edaphic niche specialization contributes to coexistence of species of Sterculiaceae in the plot, consistent with the expectations of equilibrium hypotheses. [source] The role of spatio-temporal heterogeneity in the establishment and maintenance of Suaeda maritima in salt marshesJOURNAL OF VEGETATION SCIENCE, Issue 1 2002Marc Tessier Tutin et al. (1964,1980) Abstract. The effects of disturbance and microtopography on the organization and dynamics of plant communities were studied in a European salt marsh located in the Bay of Mont St. Michel, France. The existence of seed trapping mechanisms was also tested. The study took place in the lower and middle marsh plant communities dominated by the perennials Puccinellia maritima and Halimione portulacoides, respectively and associated with the annual Suaeda maritima. Three treatments were used in series of plots placed in each community: (1) vegetation removal and root destruction to a depth of 10 cm and refilling, (2) non-remnant herbicide treatment without vegetation removal and (3) creation of depressions (20 cm deep). These treatments were compared with adjacent control plots. The first year of the experiment showed that the perennials facilitated the establishment of Suaeda by trapping its seeds. Estimation of cover, density and biomass over 5 yr following the disturbances showed that in the first 2 yr Suaeda dominated the disturbed plots. Thereafter Suaeda was gradually eliminated by competitive exclusion after ca. 3 yr in the zone originally dominated by Puccinellia maritima and after 4 yr in the zone occupied by Halimione portulacoides. Depressions constituted refuge habitats for Suaeda by limiting competition with the perennials but also led to a high risk of mortality with temporal fluctuations in density. Despite a period of investigation limited to 5 yr, our study demonstrated that natural disturbances of various types occurred and influenced the dynamics of Suaeda, Halimione and Puccinellia. We deduced that natural disturbances and microtopography are responsible for the maintenance of the habitat in a state of non-equilibrium by favouring the establishment of both spatial and temporal environmental heterogeneity. These conditions appear to be particularly favourable for the maintenance of annual species such as Suaeda maritima. [source] Correlation between richness per unit area and the species pool cannot be used to demonstrate the species pool effectJOURNAL OF VEGETATION SCIENCE, Issue 1 2000Herben Abstract. Significant correlation between the size of the species pool and richness per unit area is usually taken as a demonstration of the effect of the species pool on the species richness per unit area. This is not logically necessary. It has to be emphasized that such a correlation cannot be interpreted as a demonstration of the effect of species pool on the species richness per unit area. More generally, correlation cannot be used to demonstrate a one-directional effect of one variable upon another, since several types of (functional) relationships could produce correlations between such variables; the same caution has to be taken when analysing the species pool vs. richness per unit area correlation. In this paper, a simple Monte Carlo simulation model is used to demonstrate that (1) statistical processes acting only at the local scale (such as competitive exclusion) can generate exactly the same correlation that has been used to infer the effect of the species pool on richness per unit area; (2) this correlation would be deemed significant even if the mathematical dependency between species pool and richness per unit area is taken into account; and (3) the strength of this relation depends on beta diversity within the contiguous area used to determine the species pool. [source] Rarity and decline in palaeoendemic Martino's vole Dinaromys bogdanoviMAMMAL REVIEW, Issue 4 2008BORIS KRY, TUFEK ABSTRACT 1Martino's vole Dinaromys bogdanovi is the only living member of the Tertiary genus Dinaromys, and probably also the only surviving member of the Pliomys lineage. The range of the genus Dinaromys has historically been small and its rate of evolution has been low. 2Martino's vole shows all three attributes of rarity in accordance with Rabinowitz's ,seven forms of rarity' model: (i) its range is estimated at 43 545 km2 but the area of occupancy is <5200 km2; (ii) its habitat requirements are narrow and the species is strictly tied to exposed, karstified bedrock; and (iii) current populations are invariably small and frequently isolated. 3The Pleistocene range of Martino's vole exceeded the recent one, at least in the north-western part of the Balkans, and its shrinkage continued into the Holocene. 4Martino's vole may be in competition with the European snow vole Chionomys nivalis, which has a very similar morphology and presumably identical habitat requirements, but is shifted towards an r-selected life-history strategy. Long-term sympatry of these voles has probably resulted in competitive exclusion of the relatively K-selected Martino's vole by the relatively r-selected European snow vole. 5Martino's vole consists of two deeply divergent (about one million years ago) phylogeographical lineages, which may represent distinct cryptic species. Rarity is particularly pronounced in the north-western lineage to the west of the Neretva River, where rocky habitats are largely occupied by the European snow vole. 6In the IUCN Red List of Threatened Animals, Martino's vole is classified as ,near threatened'. However, the north-western lineage, which is phylogeographically most divergent and has the greatest genetic diversity, is classed as a ,vulnerable' evolutionary significant unit on the basis of its small area of occupancy (<2000 km2). Long-term population monitoring is an essential step in evaluating the conservation needs of Martino's vole. [source] | ||||||||||||||||||||||||||||||||||