Home About us Contact
|
Home About us Contact | ||
|
|
||
Comparative Methods (comparative + methods)
Kinds of Comparative Methods Selected AbstractsPhylogenetic Comparative Methods Strengthen Evidence for Reduced Genetic Diversity among Endangered TetrapodsCONSERVATION BIOLOGY, Issue 5 2010PATRICK A. FLIGHT evolución de la historia de vida; extinción; heterocigosidad de proteínas; regresión filogenética; tamaño poblacional efectivo Abstract:,The fitness of species with little genetic diversity is expected to be affected by inbreeding and an inability to respond to environmental change. Conservation theory suggests that endangered species will generally demonstrate lower genetic diversity than taxa that are not threatened. This hypothesis has been challenged because the time frame of anthropogenic extinction may be too fast to expect genetic factors to significantly contribute. I conducted a meta-analysis to examine how genetic diversity in 894 tetrapods correlates with extinction threat level. Because species are not evolutionarily independent, I used a phylogenetic regression framework to address this issue. Mean genetic diversity of tetrapods, as assessed by protein heterozygosity, was 29.7,31.5% lower on average in threatened species than in their nonthreatened relatives, a highly significant reduction. Within amphibians as diversity decreased extinction risk increased in phylogenetic models, but not in nonphylogenetic regressions. The effects of threatened status on diversity also remained significant after accounting for body size in mammals. These results support the hypothesis that genetic effects on population fitness are important in the extinction process. Resumen:,Se espera que la adaptabilidad de una especie con poca diversidad genética sea afectada por la endogamia y una incapacidad para responder a cambios ambientales. La teoría de la conservación sugiere que las especies en peligro generalmente muestran menor diversidad genética que taxa que no están amenazados. Esta hipótesis ha sido cuestionada porque el período de tiempo de la extinción antropogénica puede ser muy rápido para esperar que los factores genéticos contribuyan significativamente. Realice un meta-análisis para examinar cómo se correlaciona la diversidad genética de 894 tetrápodos con el nivel de amenaza de extinción. Debido a que las especies no son independientes evolutivamente, utilice un marco de regresión filogenética para abordar este tema. La media de la diversidad genética de tetrápodos, medida como la heterocigosidad de proteínas, fue 29.7,31.5% menor en las especies amenazadas que en sus parientes no amenazados, una reducción altamente significativa. En anfibios, a medida que disminuía la diversidad el riesgo de extinción incrementaba en los modelos filogenéticos, pero no en las regresiones no filogenéticas. El efecto del estatus de amenaza sobre la biodiversidad también permaneció significativo después de considerar el tamaño corporal de mamíferos. Estos resultados dan soporte a la hipótesis de que los efectos genéticos sobre la adaptabilidad de la población son importantes en el proceso de extinción. [source] Comparative methods for studying primate adaptation and allometryEVOLUTIONARY ANTHROPOLOGY, Issue 3 2001Charles L. Nunn First page of article [source] PHYLOGENETIC COMPARATIVE ANALYSIS OF LIFE-HISTORY VARIATION AMONG POPULATIONS OF THE LIZARD SCELOPORUS UNDULATUS:AN EXAMPLE AND PROGNOSISEVOLUTION, Issue 3 2004Peter H. Niewiarowski Abstract Over the past 15 years, phylogenetic comparative methods (PCMs) have become standard in the study of life-history evolution. To date, most studies have focused on variation among species or higher taxonomic levels, generally revealing the presence of significant phylogenetic effects as well as residual variation potentially attributable to adaptive evolution. Recently, population-level phylogenetic hypotheses have become available for many species, making it possible to apply PCMs directly to the level at which experiments are typically used to test adaptive hypotheses. In this study, we present the results of PCMs applied to life-history variation among populations of the widespread and well-studied lizard Sceloporus undulatus. Using S. undulatus (which may represent four closely related species) as an example, we explore the benefits of using PCMs at the population level, as well as consider the importance of several thorny methodological problems including but not limited to nonindependence of populations, lack of sufficient variation in traits, and the typically small sample sizes dictated by the difficulty of collecting detailed demographic data. We show that phylogenetic effects on life-history variation among populations of S. undulatus appear to be unimportant, and that several classic trade-offs expected by theory and revealed by many interspecific comparisons are absent. Our results suggest that PCMs applied to variation in life-history traits below the species level may be of limited value, but more studies like ours are needed to draw a general conclusion. Finally, we discuss several outstanding problems that face studies seeking to apply PCMs below the species level. [source] ADAPTIVE CONSTRAINTS AND THE PHYLOGENETIC COMPARATIVE METHOD: A COMPUTER SIMULATION TESTEVOLUTION, Issue 1 2002Emilia P. Martins Abstract Recently, the utility of modern phylogenetic comparative methods (PCMs) has been questioned because of the seemingly restrictive assumptions required by these methods. Although most comparative analyses involve traits thought to be undergoing natural or sexual selection, most PCMs require an assumption that the traits be evolving by less directed random processes, such as Brownian motion (BM). In this study, we use computer simulation to generate data under more realistic evolutionary scenarios and consider the statistical abilities of a variety of PCMs to estimate correlation coefficients from these data. We found that correlations estimated without taking phylogeny into account were often quite poor and never substantially better than those produced by the other tested methods. In contrast, most PCMs performed quite well even when their assumptions were violated. Felsenstein's independent contrasts (FIC) method gave the best performance in many cases, even when weak constraints had been acting throughout phenotypic evolution. When strong constraints acted in opposition to variance-generating (i.e., BM) forces, however, FIC correlation coefficients were biased in the direction of those BM forces. In most cases, all other PCMs tested (phylogenetic generalized least squares, phylogenetic mixed model, spatial autoregression, and phylogenetic eigenvector regression) yielded good statistical performance, regardless of the details of the evolutionary model used to generate the data. Actual parameter estimates given by different PCMs for each dataset, however, were occasionally very different from one another, suggesting that the choice among them should depend on the types of traits and evolutionary processes being considered. [source] ARE PINNIPEDS FUNCTIONALLY DIFFERENT FROM FISSIPED CARNIVORES?EVOLUTION, Issue 3 2000THE IMPORTANCE OF PHYLOGENETIC COMPARATIVE ANALYSES Abstract., It is widely assumed that adaptations to an aquatic lifestyle are so profound as to produce only obvious differences between pinnipeds and the remaining, largely terrestrial carnivore species ("fissipeds"). Thus, comparative studies of the order Carnivora routinely examine these groups independently. This approach is invalid for two reasons. First, fissipeds are a paraphyletic assemblage, which raises the general issue of when it is appropriate to ignore monophyly as a criterion for inclusion in comparative studies. Second, the claim that most functional characters (beyond a few undoubted characteristic features) are different in pinnipeds and fissipeds has never been quantitatively examined, nor with phylogenetic comparative methods. We test for possible differences between these two groups in relation to 20 morphological, life-history, physiological, and ecological variables. Comparisons employed the method of independent contrasts based on a complete and dated species-level phylogeny of the extant Carnivora. Pinnipeds differ from fissipeds only through evolutionary grade shifts in a limited number of life-history traits: litter weight (vs. gestation length), birth weight, and age of eyes opening (both vs. size). Otherwise, pinnipeds display the same rate of evolution as phylogenetically equivalent fissiped taxa for all variables. Overall functional differences between pinnipeds and fissipeds appear to have been overstated and may be no greater than those among major fissiped groups. Recognition of this fact should lead to a more complete understanding of carnivore biology as a whole through more unified comparative tests. Comparative studies that do not include monophyletic groups for phylogenetically based comparative tests should be reconsidered. [source] Using phylogenetically based comparative methods in anthropology: More questions than answersEVOLUTIONARY ANTHROPOLOGY, Issue 3 2001Monique Borgerhoff Mulder First page of article [source] Extinction vulnerability in marine populationsFISH AND FISHERIES, Issue 1 2003Nicholas K Dulvy Abstract Human impacts on the world's oceans have been substantial, leading to concerns about the extinction of marine taxa. We have compiled 133 local, regional and global extinctions of marine populations. There is typically a 53-year lag between the last sighting of an organism and the reported date of the extinction at whatever scale this has occurred. Most disappearances (80%) were detected using indirect historical comparative methods, which suggests that marine extinctions may have been underestimated because of low-detection power. Exploitation caused most marine losses at various scales (55%), followed closely by habitat loss (37%), while the remainder were linked to invasive species, climate change, pollution and disease. Several perceptions concerning the vulnerability of marine organisms appear to be too general and insufficiently conservative. Marine species cannot be considered less vulnerable on the basis of biological attributes such as high fecundity or large-scale dispersal characteristics. For commercially exploited species, it is often argued that economic extinction of exploited populations will occur before biological extinction, but this is not the case for non-target species caught in multispecies fisheries or species with high commercial value, especially if this value increases as species become rare. The perceived high potential for recovery, high variability and low extinction vulnerability of fish populations have been invoked to avoid listing commercial species of fishes under international threat criteria. However, we need to learn more about recovery, which may be hampered by negative population growth at small population sizes (Allee effect or depensation) or ecosystem shifts, as well as about spatial dynamics and connectivity of subpopulations before we can truly understand the nature of responses to severe depletions. The evidence suggests that fish populations do not fluctuate more than those of mammals, birds and butterflies, and that fishes may exhibit vulnerability similar to mammals, birds and butterflies. There is an urgent need for improved methods of detecting marine extinctions at various spatial scales, and for predicting the vulnerability of species. [source] Comparative ecology of seed mass in Psychotria (Rubiaceae): within- and between-species effects of seed mass on early performanceFUNCTIONAL ECOLOGY, Issue 4 2005H. PAZ Summary 1Experimental field data and interspecific comparative analyses were used to detect effects of seed mass on seedling performance within and among seven species of Psychotria sown in gaps and shaded rainforest sites. In addition we compared the effects of seed mass within and among species to detect concordance between the two ecological scales. We used two comparative methods: phylogenetically independent contrasts and cross-species correlations. 2Among species, we detected weak evidence of a positive correlation between seed mass and the probability of emergence in the shaded forest, and no effects of seed mass in gaps. 3Among species, no significant correlations between seed mass and either seedling survival or seedling recruitment were found in any habitat. Other variables specific to each subgenus appear to be more important than seed mass in determining survival in the shaded forest. 4There was a negative correlation between seed mass and relative growth rate (RGR) in both habitats. In gaps, small-seeded taxa exhibited particularly high RGR, compensating for the initial advantages of higher seed mass. 5All species studied exhibited recruitment in gaps equal to or higher than that in the shaded forest. However, recruitment success in shaded forest relative to gaps increased with seed mass, indicating a higher affinity for shaded forest among larger-seeded taxa, but this relationship was only detected using PICS analysis. 6.,Correlations between seed mass and seedling mass are similar within and among species, indicating a simple principle of mass transference. In contrast, correlations between seed mass and seedling emergence, seedling survival, seedling recruitment and RGR depend on the scale at which they are observed. [source] Macroecology, global change and the shadow of forgotten ancestorsGLOBAL ECOLOGY, Issue 1 2008José Alexandre Felizola Diniz-Filho ABSTRACT Many recent studies have evaluated how global changes will affect biodiversity, and have mainly focused on how to develop conservation strategies to avoid, or at least minimize, extinctions due to shifts in suitable habitats for the species. However, these complex potential responses might be in part structured in phylogeny, because of the macroecological traits underlying them. In this comment, we review recent analytical developments in phylogenetic comparative methods that can be used to understand patterns of trait changes under environmental change. We focus on a partial regression approach that allows for partitioning the variance of traits into a fraction attributed to a pure ecological component, a fraction attributed to phylogenetically structured environmental variation (niche conservatism) and a fraction that may be attributed to phylogenetic effects only. We then develop a novel interpretation for linking these components for multiple traits with potential responses of species to global environmental change (i.e. adaptation, range shifts or extinctions). We hope that this interpretation will stimulate further research linking evolutionary components of multiple traits with broad-scale environmental changes. [source] Dispersal and the interspecific abundance-occupancy relationship in British birdsGLOBAL ECOLOGY, Issue 5 2003Kevin J. Gaston ABSTRACT Aim To test the prediction that deviations of species from the positive interspecific relationship between abundance and occupancy (a measure of geographical range size) are related to differences in dispersal. Location Great Britain. Methods Quantitative data on the abundances, occupancy and dispersal distances of British birds are compared using phylogenetic comparative methods. Results Measures of natal and adult dispersal distance, and the intraspecific variance in these parameters, explain little variation in occupancy in addition to that accounted for by population size. Individual dispersal variables failed to explain significant variance when added individually to a model with population size as a predictor. Migrants and species using wet habitats tend to disperse further than residents and dry habitat species. Analysing these four groups separately revealed effects of dispersal only on the occupancy attained by dry habitat species. Conclusions The only consistent predictor of occupancy in these analyses was population size. [source] Assessment of the benefits of user involvement in health research from the Warwick Diabetes Care Research User Group: a qualitative case studyHEALTH EXPECTATIONS, Issue 3 2007Antje Lindenmeyer PhD Abstract Objective, To assess the benefits of involving health-care users in diabetes research. Design and participants, For this qualitative case study, semi-structured interviews were conducted with researchers who had worked extensively with the group. During regular meetings of the Research User Group, members discussed their views of the group's effectiveness as part of the meeting's agenda. Interviews and discussions were transcribed, coded using N-Vivo software and analysed using constant comparative methods. Results, Involvement of users in research was generally seen as contributing to effective and meaningful research. However, the group should not be considered to be representative of the patient population or participants of future trials. An important contributor to the group's success was its longstanding nature, enabling users to gain more insight into research and form constructive working relationships with researchers. The user-led nature of the group asserted itself, especially, in the language used during group meetings. A partial shift of power from researchers to users was generally acknowledged. Users' main contribution was their practical expertise in living with diabetes, but their involvement also helped researchers to remain connected to the ,real world' in which research would be applied. While the group's work fulfilled established principles of consumer involvement in research, important contributions relying on personal interaction between users and researchers were hard to evaluate by process measures alone. Conclusions, We demonstrated the feasibility, acceptability and effectiveness of this longstanding, experienced, lay-led research advisory group. Its impact on research stems from the continuing interaction between researchers and users, and the general ethos of learning from each other in an on-going process. Both process measures and qualitative interviews with stakeholders are needed to evaluate the contributions of service users to health research. [source] Using a synthesised technique for grounded theory in nursing researchJOURNAL OF CLINICAL NURSING, Issue 16 2009Hsiao-Yu Chen Aims., To introduce a synthesised technique for using grounded theory in nursing research. Background., Nursing increasingly uses grounded theory for a broadened perspective on nursing practice and research. Nurse researchers have choices in how to choose and use grounded theory as a research method. These choices come from a deep understanding of the different versions of grounded theory, including Glaser's classic grounded theory and Strauss and Corbin's later approach. Design., Grounded theory related literature review was conducted. Methods., This is a methodological review paper. Results., Nursing researchers intent on using a grounded theory methodology should pay attention to the theoretical discussions including theoretical sampling, theoretical sensitivity, constant comparative methods and asking questions, keeping memoranda diagramming, identification of a core category and a resultant explanatory theory. A synthesised approach is developed for use, based on Strauss and Corbin's style of sampling and memoranda writing, but selecting theoretical coding families, that differ from the paradigm model of Strauss and Corbin, from the wide range suggested by Glaser. This led to the development of a multi-step synthesised approach to grounded theory data analysis based on the works of Glaser, Charmaz and Strauss and Corbin. Conclusions., The use of this synthesised approach provides a true reflection of Glaser's idea of ,emergence of theory from the data' and Strauss and Corbin's style of sampling and memoranda writing is employed. This multi-step synthesised method of data analysis maintains the philosophical perspective of grounded theory. Relevance to clinical practice., This method indicates how grounded theory has developed, where it might go next in nursing research and how it may continue to evolve. [source] Metasynthesis: withdrawing life-sustaining treatments: the experience of family decision-makersJOURNAL OF CLINICAL NURSING, Issue 2 2009Mary Ann Meeker Aim., The present study was undertaken to synthesise findings from qualitative investigations of family participation in decisions to withdraw and/or withhold life-sustaining treatment from a seriously ill family member. Background., As a consequence of increasing effectiveness and sophistication of available medical interventions, death is commonly preceded by a decision to withdraw or withhold potentially life-sustaining treatments. These decisions take place in a bioethical context characterised by the preeminence of self-determination, but patients are typically too ill to make their own decisions. Thus, family members are called upon to participate in these morally consequential decisions on the patient's behalf. Design., Metasynthesis Method., Metasynthesis is a form of inquiry that provides for integration of qualitative studies' findings to strengthen knowledge for practice and advance theoretical development. This metasynthesis was conducted using the constant comparative methods of grounded theory. Results., Family members engage in a process of participation in decision-making that is comprised of three major categories: reframing reality, relating and integrating. Surrogates used both cues and information as they reframed their understanding of the patient's status. Relationships with providers and with other family members powerfully influenced the decision-making process. Integrating was characterised by reconciling and going forward. This part of the process has both intrapersonal and interpersonal aspects and describes how family decision-makers find meaning in their experience and move forward in their lives. Conclusions., This synthesis provides a more comprehensive and empirically supported understanding of family members' experiences as they participate in treatment decisions for dying family members. Relevance to clinical practice., This metasynthesis provides evidence to improve family care during treatment withdrawal/withholding decision-making and a theoretical model that can be used to guide creation of clinical practice guidelines. Through increased understanding of family members' experiences, clinicians can more effectively support family decision-making processes. [source] The seven deadly sins of comparative analysisJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 7 2009R. P. FRECKLETON Abstract Phylogenetic comparative methods are extremely commonly used in evolutionary biology. In this paper, I highlight some of the problems that are frequently encountered in comparative analyses and review how they can be fixed. In broad terms, the problems boil down to a lack of appreciation of the underlying assumptions of comparative methods, as well as problems with implementing methods in a manner akin to more familiar statistical approaches. I highlight that the advent of more flexible computing environments should improve matters and allow researchers greater scope to explore methods and data. [source] Are parental care trade-offs in shorebirds driven by parental investment or sexual selection?JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 4 2009V. A. OLSON Abstract Sexual selection, mating systems and parental behaviour are closely linked, although the exact nature of their relationship is controversial. The parental investment hypothesis (PIH) states that parental care disparity drives sexual selection intensity, because the sex providing less care competes for the sex that provides more. In contrast, the sexual selection hypothesis (SSH) asserts that more intense sexual selection on males leads to reduced male parental investment. We tested these hypotheses using directional phylogenetic comparative methods in shorebirds, which have an unusually diverse array of breeding systems. Changes in parental care and sexual selection intensity were tightly correlated, and we carried out three sets of analyses focusing on changes in male behaviour, female behaviour and in either sex. The results from the analyses were consistent with both PIH and SSH, although the patterns in male transition were sensitive to model values. We propose two explanations for these results. First, phylogenetic transitions may be idiosyncratic so that they depend on the ecological circumstances of individual species. Second, transitions in social traits, such as breeding systems, may be rapid and take place in ecological time, so directional phylogenetic methods that work through longer time scales may not infer accurately the timing and direction of all changes. [source] Genome size and recombination in angiosperms: a second lookJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 2 2007J. ROSS-IBARRA Abstract Despite dramatic differences in genome size , and thus space for recombination to occur , previous workers found no correlation between recombination rate and genome size in flowering plants. Here I re-investigate these claims using phylogenetic comparative methods to test a large data set of recombination data in angiosperms. I show that genome size is significantly correlated with recombination rate across a wide sampling of species and that change in genome size explains a meaningful proportion (,20%) of variation in recombination rate. I show that the strength of this correlation is comparable with that of several characters previously linked to evolutionary change in recombination rate, but argue that consideration of processes of genome size change likely make the observed correlation a conservative estimate. And finally, although I find that recombination rate increases less than proportionally to change in genome size, several mechanistic and theoretical arguments suggest that this result is not unexpected. [source] Cope's rule in cryptodiran turtles: do the body sizes of extant species reflect a trend of phyletic size increase?JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 4 2006D. S. MOEN Abstract Cope's rule of phyletic size increase is questioned as a general pattern of body size evolution. Most studies of Cope's rule have examined trends in the paleontological record. However, neontological approaches are now possible due to the development of model-based comparative methods, as well as the availability of an abundance of phylogenetic data. I examined whether the phylogenetic distribution of body sizes in extant cryptodiran turtles is consistent with Cope's rule. To do this, I examined body size evolution in each of six major clades of cryptodiran turtles and also across the whole tree of cryptodirans (n = 201 taxa). Extant cryptodiran turtles do not appear to follow Cope's rule, as no clade showed a significant phyletic body size trend. Previous analyses in other extant vertebrates have also found no evidence for phyletic size increase, which is in contrast to the paleontological data that support the rule in a number of extinct vertebrate taxa. [source] The importance of phylogenetic scale in tests of Bergmann's and Rapoport's rules: lessons from a clade of South American lizardsJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 6 2005F. B. CRUZ Abstract We tested for the occurrence of Bergmann's rule, the pattern of increasing body size with latitude, and Rapoport's rule, the positive relationship between geographical range size and latitude, in 34 lineages of Liolaemus lizards that occupy arid regions of the Andean foothills. We tested the climatic-variability hypothesis (CVH) by examining the relationship between thermal tolerance breadth and distribution. Each of these analyses was performed varying the level of phylogenetic inclusiveness. Bergmann's rule and the CVH were supported, but Rapoport's rule was not. More variance in the data for Bergmann's rule and the CVH was explained using species belonging to the L. boulengeri series rather than all species, and inclusion of multiple outgroups tended to obscure these macroecological patterns. Evidence for Bergmann's rule and the predicted patterns from the CVH remained after application of phylogenetic comparative methods, indicating a greater role of ecological processes rather than phylogeny in shaping the current species distributions of these lizards. [source] Differential correlates of diet and phylogeny on the shape of the premaxilla and anterior tooth in sparid fishes (Perciformes: Sparidae)JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 5 2004M. Linde Abstract We explore the correlational patterns of diet and phylogeny on the shape of the premaxilla and anterior tooth in sparid fishes (Perciformes: Sparidae) from the western Mediterranean Sea. The premaxilla is less variable, and in spite of the presence of species-specific features, a common structural pattern is easily recognizable in all species (i.e. the ascending and the articular processes are fused in a single branch, as in many percoid fishes). In contrast, tooth shape is more variable, and different structural types can be recognized (e.g. canine-like or incisive). Coupling geometric morphometric and comparative methods we found that the relationship between shape, diet and phylogeny also differs between premaxilla and tooth. Thus, the shape of the premaxilla is significantly correlated with food type, whereas the shape of the teeth is not correlated with diet, and probably reflects the species phylogenetic relationships. Two biological roles, resistance against compressive forces generated in the buccal cavity and the size of the oral gape, would explain the ecomorphological patterns of the premaxilla. The premaxilla and anterior tooth appear to evolve at different rates (mosaic evolution) and represent an example of morphological traits belonging to the same functional unit but following uncoupled evolutionary pathways. [source] Tempo and mode in evolution: phylogenetic inertia, adaptation and comparative methodsJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 6 2002S. P. Blomberg Abstract Before the Evolutionary Synthesis, ,phylogenetic inertia' was associated with theories of orthogenesis, which claimed that organisms possessed an endogenous perfecting principle. The concept in the modern literature dates to Simpson (1944), who used ,evolutionary inertia' as a description of pattern in the fossil record. Wilson (1975) used ,phylogenetic inertia' to describe population-level or organismal properties that can affect the course of evolution in response to selection. Many current authors now view phylogenetic inertia as an alternative hypothesis to adaptation by natural selection when attempting to explain interspecific variation, covariation or lack thereof in phenotypic traits. Some phylogenetic comparative methods have been claimed to allow quantification and testing of phylogenetic inertia. Although some existing methods do allow valid tests of whether related species tend to resemble each other, which we term ,phylogenetic signal', this is simply pattern recognition and does not imply any underlying process. Moreover, comparative data sets generally do not include information that would allow rigorous inferences concerning causal processes underlying such patterns. The concept of phylogenetic inertia needs to be defined and studied with as much care as ,adaptation'. [source] Phylogenetic autocorrelation and heritability of geographic range size, shape and position of fiddler crabs, genus Uca (Crustacea, Decapoda)JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 2 2010J. C. Nabout Abstract The aim of this study was to evaluate the levels of phylogenetic heritability of the geographical range size, shape and position for 88 species of fiddler crabs of the world, using phylogenetic comparative methods and simulation procedures to evaluate their fit to the neutral model of Brownian motion. The geographical range maps were compiled from literature, and range size was based on the entire length of coastline occupied by each species, and the position of each range was calculated as its latitudinal and longitudinal midpoint. The range shape of each species was based in fractal dimension (box-counting technique). The evolutionary patterns in the geographical range metrics were explored by phylogenetic correlograms using Moran's I autocorrelation coefficients, autoregressive method (ARM) and phylogenetic eigenvector regression (PVR). The correlograms were compared with those obtained by simulations of Brownian motion processes across phylogenies. The distribution of geographical range size of fiddler crabs is right-skewed and weak phylogenetic autocorrelation was observed. On the other hand, there was a strong phylogenetic pattern in the position of the range (mainly along longitudinal axis). Indeed, the ARM and PVR evidenced, respectively, that ca. 86% and 91% of the longitudinal midpoint could be explained by phylogenetic relationships among the species. The strong longitudinal phylogenetic pattern may be due to vicariant allopatric speciation and geographically structured cladogenesis in the group. The traits analysed (geographical range size and position) did not follow a Brownian motion process, thus suggesting that both adaptive ecological and evolutionary processes must be invoked to explain their dynamics, not following a simple neutral inheritance in the fiddler-crab evolution. Resumen El objetivo de este trabajo fue estimar los niveles de herencia filogenética existentes en la posición geográfica, forma y el tamaño de rango geográfico en 88 especies de cangrejo violinista del mundo, mediante simulaciones y métodos comparativos filogenéticos para así evaluar su ajuste al modelo neutro de evolución browniana. Los mapas de rango geográfico se obtuvieron de la literatura. La forma de rango geográfico fue estimada en la dimensión fractal. Los patrones evolutivos en el tamaño y forma del rango geográfico y la posición geográfica fueron explorados mediante correlogramas filogenéticos utilizando el índice I de Moran, coeficientes autorregresivos (ARM) y regressión por autovetores filogenéticos (PVR). Estos correlogramas fueron comparados con aquellos obtenidos mediante la simulación de procesos de evolución browniana en las filogenias. El tamaño y forma de rango geográfico del cangrejo violinista mostró una distribución apuntada hacia la derecha aunque no se encontró autocorrelación filogenética. Por otra parte, se observó un marcado patrón filogenético para la posición geográfica del rango (principalmente a lo largo del eje longitudinal). De hecho, el ARM y PVR evidenció respectivamente que cerca del 86% y 91% de la localización del punto medio longitudinal del rango se puede explicar mediante las relaciones filogenéticas existentes entre las especies. El fuerte patrón filogenético en la longitud podría ser debido a especiación alopátrica y a una cladogénesis estructurada geográficamente para el grupo, tal y como se propuso en las hipótesis. Los rasgos analizados (rango geográfico y posición geográfica) no siguieron un proceso de evolución browniana, sugiriendo pues que tanto los procesos evolutivos como la adaptación ecológica deberían ser tenidos en cuenta para explicar sus dinámicas, ya que el transcurso de la evolución del cangrejo violinista no se explica mediante un simple modelo de herencia neutra. [source] The Contribution of Medical Anthropology to a Comparative Study of Culture: Susto and TuberculosisMEDICAL ANTHROPOLOGY QUARTERLY, Issue 4 2001Arthur J. Rubel Results of studies of the popular illness susto and the biomedical entity pulmonary tuberculosis are offered to illustrate how comparisons of sick and well people can elucidate societal processes in cultural anthropology. [comparative methods, susto, tuberculosis] [source] Distribution of the anther-smut pathogen Microbotryum on species of the CaryophyllaceaeNEW PHYTOLOGIST, Issue 1 2010Michael E. Hood Summary ,Understanding disease distributions is of fundamental and applied importance, yet few studies benefit from integrating broad sampling with ecological and phylogenetic data. Here, anther-smut disease, caused by the fungus Microbotryum, was assessed using herbarium specimens of Silene and allied genera of the Caryophyllaceae. ,A total of 42 000 herbarium specimens were examined, and plant geographical distributions and morphological and life history characteristics were tested as correlates of disease occurrence. Phylogenetic comparative methods were used to determine the association between disease and plant life-span. ,Disease was found on 391 herbarium specimens from 114 species and all continents with native Silene. Anther smut occurred exclusively on perennial plants, consistent with the pathogen requiring living hosts to overwinter. The disease was estimated to occur in 80% of perennial species of Silene and allied genera. The correlation between plant life-span and disease was highly significant while controlling for the plant phylogeny, but the disease was not correlated with differences in floral morphology. ,Using resources available in natural history collections, this study illustrates how disease distribution can be determined, not by restriction to a clade of susceptible hosts or to a limited geographical region, but by association with host life-span, a trait that has undergone frequent evolutionary transitions. [source] Time , size tradeoffs: a phylogenetic comparative study of flowering time, plant height and seed mass in a north-temperate floraOIKOS, Issue 3 2008Kjell Bolmgren Parents face a timing problem as to when they should begin devoting resources from their own growth and survival to mating and offspring development. Seed mass and number, as well as maternal survival via plant size, are dependent on time for development. The time available in the favorable season will also affect the size of the developing juveniles and their survival through the unfavorable season. Flowering time may thus represent the outcome of such a time partitioning problem. We analyzed correlations between flowering onset time, seed mass, and plant height in a north-temperate flora, using both cross-species comparisons and phylogenetic comparative methods. Among perennial herbs, flowering onset time was negatively correlated with seed mass (i.e. plants with larger seeds started flowering earlier) while flowering onset time was positively correlated with plant height. Neither of these correlations was found among woody plants. Among annual plants, flowering onset time was positively correlated with seed mass. Cross-species and phylogenetically informed analyses largely agreed, except that flowering onset time was also positively correlated with plant height among annuals in the cross-species analysis. The different signs of the correlations between flowering onset time and seed mass (compar. gee regression coefficient=,7.8) and flowering onset time and plant height (compar. gee regression coefficient=+30.5) for perennial herbs, indicate that the duration of the growth season may underlie a tradeoff between maternal size and offspring size in perennial herbs, and we discuss how the partitioning of the season between parents and offspring may explain the association between early flowering and larger seed mass among these plants. [source] | ||||||||||||||||||||||||||||