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Community Ecology (community + ecology)
Selected AbstractsPrairie dog presence affects occurrence patterns of disease vectors on small mammalsECOGRAPHY, Issue 5 2008R. Jory Brinkerhoff Wildlife disease is recognized as a burgeoning threat to imperiled species and aspects of host and vector community ecology have been shown to have significant effects on disease dynamics. The black-tailed prairie dog is a species of conservation concern that is highly susceptible to plague, a flea-transmitted disease. Prairie dogs (Cynomys) alter the grassland communities in which they exist and have been shown to affect populations of small rodents, which are purported disease reservoirs. To explore potential ecological effects of black-tailed prairie dogs on plague dynamics, we quantified flea occurrence patterns on small mammals in the presence and absence of prairie dogs at 8 study areas across their geographic range. Small mammals sampled from prairie dog colonies showed significantly higher flea prevalence, flea abundance, and relative flea species richness than those sampled from off-colony sites. Successful plague transmission likely is dependent on high prevalence and abundance of fleas that can serve as competent vectors. Prairie dogs may therefore facilitate the maintenance of plague by increasing flea occurrence on potential plague reservoir species. Our data demonstrate the previously unreported ecological influence of prairie dogs on vector species assemblages, which could influence disease dynamics. [source] On the estimation of species richness based on the accumulation of previously unrecorded speciesECOGRAPHY, Issue 1 2002Emmanuelle Cam Estimation of species richness of local communities has become an important topic in community ecology and monitoring. Investigators can seldom enumerate all the species present in the area of interest during sampling sessions. If the location of interest is sampled repeatedly within a short time period, the number of new species recorded is typically largest in the initial sample and decreases as sampling proceeds, but new species may be detected if sampling sessions are added. The question is how to estimate the total number of species. The data collected by sampling the area of interest repeatedly can be used to build species accumulation curves: the cumulative number of species recorded as a function of the number of sampling sessions (which we refer to as "species accumulation data"). A classic approach used to compute total species richness is to fit curves to the data on species accumulation with sampling effort. This approach does not rest on direct estimation of the probability of detecting species during sampling sessions and has no underlying basis regarding the sampling process that gave rise to the data. Here we recommend a probabilistic, nonparametric estimator for species richness for use with species accumulation data. We use estimators of population size that were developed for capture-recapture data, but that can be used to estimate the size of species assemblages using species accumulation data. Models of detection probability account for the underlying sampling process. They permit variation in detection probability among species. We illustrate this approach using data from the North American Breeding Bird Survey (BBS). We describe other situations where species accumulation data are collected under different designs (e.g., over longer periods of time, or over spatial replicates) and that lend themselves to of use capture-recapture models for estimating the size of the community of interest. We discuss the assumptions and interpretations corresponding to each situation. [source] Seeking a second opinion: uncertainty in disease ecologyECOLOGY LETTERS, Issue 6 2010Brett T. McClintock Ecology Letters (2010) 13: 659,674 Abstract Analytical methods accounting for imperfect detection are often used to facilitate reliable inference in population and community ecology. We contend that similar approaches are needed in disease ecology because these complicated systems are inherently difficult to observe without error. For example, wildlife disease studies often designate individuals, populations, or spatial units to states (e.g., susceptible, infected, post-infected), but the uncertainty associated with these state assignments remains largely ignored or unaccounted for. We demonstrate how recent developments incorporating observation error through repeated sampling extend quite naturally to hierarchical spatial models of disease effects, prevalence, and dynamics in natural systems. A highly pathogenic strain of avian influenza virus in migratory waterfowl and a pathogenic fungus recently implicated in the global loss of amphibian biodiversity are used as motivating examples. Both show that relatively simple modifications to study designs can greatly improve our understanding of complex spatio-temporal disease dynamics by rigorously accounting for uncertainty at each level of the hierarchy. [source] Field theory for biogeography: a spatially explicit model for predicting patterns of biodiversityECOLOGY LETTERS, Issue 1 2010James P. O'Dwyer Abstract Predicting the variation of biodiversity across the surface of the Earth is a fundamental issue in ecology, and in this article we focus on one of the most widely studied spatial biodiversity patterns: the species,area relationship (SAR). The SAR is a central tool in conservation, being used to predict species loss following global climate change, and is striking in its universality throughout different geographical regions and across the tree of life. In this article we draw upon the methods of quantum field theory and the foundation of neutral community ecology to derive the first spatially explicit neutral prediction for the SAR. We find that the SAR has three phases, with a power law increase at intermediate scales, consistent with decades of documented empirical patterns. Our model also provides a building block for incorporating non-neutral biological variation, with the potential to bridge the gap between neutral and niche-based approaches to community assembly. Ecology Letters (2010) 13: 87,95 [source] The merging of community ecology and phylogenetic biologyECOLOGY LETTERS, Issue 7 2009Jeannine Cavender-Bares Abstract The increasing availability of phylogenetic data, computing power and informatics tools has facilitated a rapid expansion of studies that apply phylogenetic data and methods to community ecology. Several key areas are reviewed in which phylogenetic information helps to resolve long-standing controversies in community ecology, challenges previous assumptions, and opens new areas of investigation. In particular, studies in phylogenetic community ecology have helped to reveal the multitude of processes driving community assembly and have demonstrated the importance of evolution in the assembly process. Phylogenetic approaches have also increased understanding of the consequences of community interactions for speciation, adaptation and extinction. Finally, phylogenetic community structure and composition holds promise for predicting ecosystem processes and impacts of global change. Major challenges to advancing these areas remain. In particular, determining the extent to which ecologically relevant traits are phylogenetically conserved or convergent, and over what temporal scale, is critical to understanding the causes of community phylogenetic structure and its evolutionary and ecosystem consequences. Harnessing phylogenetic information to understand and forecast changes in diversity and dynamics of communities is a critical step in managing and restoring the Earth's biota in a time of rapid global change. [source] Phylogenetic beta diversity: linking ecological and evolutionary processes across space in timeECOLOGY LETTERS, Issue 12 2008Catherine H. Graham Abstract A key challenge in ecological research is to integrate data from different scales to evaluate the ecological and evolutionary mechanisms that influence current patterns of biological diversity. We build on recent attempts to incorporate phylogenetic information into traditional diversity analyses and on existing research on beta diversity and phylogenetic community ecology. Phylogenetic beta diversity (phylobetadiversity) measures the phylogenetic distance among communities and as such allows us to connect local processes, such as biotic interactions and environmental filtering, with more regional processes including trait evolution and speciation. When combined with traditional measures of beta diversity, environmental gradient analyses or ecological niche modelling, phylobetadiversity can provide significant and novel insights into the mechanisms underlying current patterns of biological diversity. [source] The implicit assumption of symmetry and the species abundance distributionECOLOGY LETTERS, Issue 2 2008David Alonso Abstract Species abundance distributions (SADs) have played a historical role in the development of community ecology. They summarize information about the number and the relative abundance of the species encountered in a sample from a given community. For years ecologists have developed theory to characterize species abundance patterns, and the study of these patterns has received special attention in recent years. In particular, ecologists have developed statistical sampling theories to predict the SAD expected in a sample taken from a region. Here, we emphasize an important limitation of all current sampling theories: they ignore species identity. We present an alternative formulation of statistical sampling theory that incorporates species asymmetries in sampling and dynamics, and relate, in a general way, the community-level SAD to the distribution of population abundances of the species integrating the community. We illustrate the theory on a stochastic community model that can accommodate species asymmetry. Finally, we discuss the potentially important role of species asymmetries in shaping recently observed multi-humped SADs and in comparisons of the relative success of niche and neutral theories at predicting SADs. [source] Facilitation can increase the phylogenetic diversity of plant communitiesECOLOGY LETTERS, Issue 11 2007Alfonso Valiente-Banuet Abstract With the advent of molecular phylogenies the assessment of community assembly processes has become a central topic in community ecology. These processes have focused almost exclusively on habitat filtering and competitive exclusion. Recent evidence, however, indicates that facilitation has been important in preserving biodiversity over evolutionary time, with recent lineages conserving the regeneration niches of older, distant lineages. Here we test whether, if facilitation among distant-related species has preserved the regeneration niche of plant lineages, this has increased the phylogenetic diversity of communities. By analyzing a large worldwide database of species, we showed that the regeneration niches were strongly conserved across evolutionary history. Likewise, a phylogenetic supertree of all species of three communities driven by facilitation showed that nurse species facilitated distantly related species and increased phylogenetic diversity. [source] The wealth of species: ecological communities, complex systems and the legacy of Frank PrestonECOLOGY LETTERS, Issue 3 2007Jeffrey C. Nekola Abstract General statistical patterns in community ecology have attracted considerable recent debate. Difficulties in discriminating among mathematical models and the ecological mechanisms underlying them are likely related to a phenomenon first described by Frank Preston. He noted that the frequency distribution of abundances among species was uncannily similar to the Boltzmann distribution of kinetic energies among gas molecules and the Pareto distribution of incomes among wage earners. We provide additional examples to show that four different ,distributions of wealth' (species abundance distributions, species,area and species,time relations, and distance decay of compositional similarity) are not unique to ecology, but have analogues in other physical, geological, economic and cultural systems. Because these appear to be general statistical patterns characteristic of many complex dynamical systems they are likely not generated by uniquely ecological mechanistic processes. [source] Predicting species distribution: offering more than simple habitat modelsECOLOGY LETTERS, Issue 9 2005Antoine Guisan Abstract In the last two decades, interest in species distribution models (SDMs) of plants and animals has grown dramatically. Recent advances in SDMs allow us to potentially forecast anthropogenic effects on patterns of biodiversity at different spatial scales. However, some limitations still preclude the use of SDMs in many theoretical and practical applications. Here, we provide an overview of recent advances in this field, discuss the ecological principles and assumptions underpinning SDMs, and highlight critical limitations and decisions inherent in the construction and evaluation of SDMs. Particular emphasis is given to the use of SDMs for the assessment of climate change impacts and conservation management issues. We suggest new avenues for incorporating species migration, population dynamics, biotic interactions and community ecology into SDMs at multiple spatial scales. Addressing all these issues requires a better integration of SDMs with ecological theory. [source] Connections between species diversity and genetic diversityECOLOGY LETTERS, Issue 7 2005Mark Vellend Abstract Species diversity and genetic diversity remain the nearly exclusive domains of community ecology and population genetics, respectively, despite repeated recognition in the literature over the past 30 years of close parallels between these two levels of diversity. Species diversity within communities and genetic diversity within populations are hypothesized to co-vary in space or time because of locality characteristics that influence the two levels of diversity via parallel processes, or because of direct effects of one level of diversity on the other via several different mechanisms. Here, we draw on a wide range of studies in ecology and evolution to examine the theoretical underpinnings of these hypotheses, review relevant empirical literature, and outline an agenda for future research. The plausibility of species diversity,genetic diversity relationships is supported by a variety of theoretical and empirical studies, and several recent studies provide direct, though preliminary support. Focusing on potential connections between species diversity and genetic diversity complements other approaches to synthesis at the ecology,evolution interface, and should contribute to conceptual unification of biodiversity research at the levels of genes and species. [source] The ecology of restoration: historical links, emerging issues and unexplored realmsECOLOGY LETTERS, Issue 6 2005T. P. Young Abstract Restoration ecology is a young academic field, but one with enough history to judge it against past and current expectations of the science's potential. The practice of ecological restoration has been identified as providing ideal experimental settings for tests of ecological theory; restoration was to be the ,acid test' of our ecological understanding. Over the past decade, restoration science has gained a strong academic foothold, addressing problems faced by restoration practitioners, bringing new focus to existing ecological theory and fostering a handful of novel ecological ideas. In particular, recent advances in plant community ecology have been strongly linked with issues in ecological restoration. Evolving models of succession, assembly and state-transition are at the heart of both community ecology and ecological restoration. Recent research on seed and recruitment limitation, soil processes, and diversity,function relationships also share strong links to restoration. Further opportunities may lie ahead in the ecology of plant ontogeny, and on the effects of contingency, such as year effects and priority effects. Ecology may inform current restoration practice, but there is considerable room for greater integration between academic scientists and restoration practitioners. [source] Sampling Hubbell's neutral theory of biodiversityECOLOGY LETTERS, Issue 10 2004David Alonso Abstract In the context of neutral theories of community ecology, a novel genealogy-based framework has recently furnished an analytic extension of Ewens' sampling multivariate abundance distribution, which also applies to a random sample from a local community. Here, instead of taking a multivariate approach, we further develop the sampling theory of Hubbell's neutral spatially implicit theory and derive simple abundance distributions for a random sample both from a local community and a metacommunity. Our result is given in terms of the average number of species with a given abundance in any randomly extracted sample. Contrary to what has been widely assumed, a random sample from a metacommunity is not fully described by the Fisher log-series, but by a new distribution. This new sample distribution matches the log-series expectation at high biodiversity values (, > 1) but clearly departs from it for species-poor metacommunities (, < 1). Our theoretical framework should be helpful in the better assessment of diversity and testing of the neutral theory by using abundance data. [source] Parasites in the food web: linking amphibian malformations and aquatic eutrophicationECOLOGY LETTERS, Issue 7 2004Pieter T. J. Johnson Abstract Emerging diseases are an ever-growing affliction of both humans and wildlife. By exploring recent increases in amphibian malformations (e.g. extra or missing limbs), we illustrate the importance of food web theory and community ecology for understanding and controlling emerging infections. Evidence points to a native parasite, Ribeiroia ondatrae, as the primary culprit of these malformations, but reasons for the increase have remained conjectural. We suggest that the increase is a consequence of complex changes to aquatic food webs resulting from anthropogenic disturbance. Our results implicate cultural eutrophication as a driver of elevated parasitic infection: (1) eutrophication causes a predator-mediated shift in snail species composition toward Planorbella spp., (2) Planorbella are the exclusive first intermediate hosts of R. ondatrae and (3) Ribeiroia infection is a strong predictor of amphibian malformation levels. Our study illustrates how the effects of anthropogenic disturbance on epidemic disease can be mediated through direct and indirect changes in food web structure. [source] The metacommunity concept: a framework for multi-scale community ecologyECOLOGY LETTERS, Issue 7 2004M. A. Leibold Abstract The metacommunity concept is an important way to think about linkages between different spatial scales in ecology. Here we review current understanding about this concept. We first investigate issues related to its definition as a set of local communities that are linked by dispersal of multiple potentially interacting species. We then identify four paradigms for metacommunities: the patch-dynamic view, the species-sorting view, the mass effects view and the neutral view, that each emphasizes different processes of potential importance in metacommunities. These have somewhat distinct intellectual histories and we discuss elements related to their potential future synthesis. We then use this framework to discuss why the concept is useful in modifying existing ecological thinking and illustrate this with a number of both theoretical and empirical examples. As ecologists strive to understand increasingly complex mechanisms and strive to work across multiple scales of spatio-temporal organization, concepts like the metacommunity can provide important insights that frequently contrast with those that would be obtained with more conventional approaches based on local communities alone. [source] Site scores and conditional biplots in canonical correspondence analysisENVIRONMETRICS, Issue 1 2004Jan Graffelman Abstract Canonical correspondence analysis is an important multivariate technique in community ecology. It produces an interesting biplot that summarizes the data matrices involved in the analysis. The method produces two sets of site scores that can be used in a biplot. One set concerns site scores that are weighted averages of the species scores (WA scores), and the other set represents site scores that are linear combinations of the environmental variables (LC scores). We show that the use of both sets of scores in a CCA biplot can be justified. The use of the WA scores leads to the best possible representation of the species data conditional on the representation of the weighted averages. Likewise, the LC scores lead to the best possible representation of the environmental variables, also conditional on the representation of the weighted averages and on the use of a Mahalanobis metric. The eigenvalues obtained in CCA indicate how well the species data are represented when LC scores are used. The quality of representation of the species data when WA scores are used can be computed from the CCA eigenvalues and the variances of the WA scores. Scalar products between WA scores and environmental variable vectors do not form a biplot of the environmental data. Theoretical results are illustrated with Australian data from freshwater ecology. Copyright © 2003 John Wiley & Sons, Ltd. [source] EVOLUTIONARY CONSTRAINT AND ECOLOGICAL CONSEQUENCESEVOLUTION, Issue 7 2010Douglas J. Futuyma One of the most important shifts in evolutionary biology in the past 50 years is an increased recognition of sluggish evolution and failures to adapt, which seem paradoxical in view of abundant genetic variation and many instances of rapid local adaptation. I review hypotheses of evolutionary constraint (or restraint), and suggest that although constraints on individual characters or character complexes may often reside in the structure or paucity of genetic variation, organism-wide stasis, as described by paleontologists, might better be explained by a hypothesis of ephemeral divergence, according to which the spatial or temporal divergence of populations is often short-lived because of interbreeding with nondivergent populations. Among the many consequences of acknowledging evolutionary constraints, community ecology is being transformed as it takes into account phylogenetic niche conservatism and the strong imprint of deep history. [source] WHY DOES A TRAIT EVOLVE MULTIPLE TIMES WITHIN A CLADE?EVOLUTION, Issue 1 2006REPEATED EVOLUTION OF SNAKELINE BODY FORM IN SQUAMATE REPTILES Abstract Why does a trait evolve repeatedly within a clade? When examining the evolution of a trait, evolutionary biologists typically focus on the selective advantages it may confer and the genetic and developmental mechanisms that allow it to vary. Although these factors may be necessary to explain why a trait evolves in a particular instance, they may not be sufficient to explain phylogenetic patterns of repeated evolution or conservatism. Instead, other factors may also be important, such as biogeography and competitive interactions. In squamate reptiles (lizards and snakes) a dramatic transition in body form has occurred repeatedly, from a fully limbed, lizardlike body form to a limbreduced, elongate, snakelike body form. We analyze this trait in a phylogenetic and biogeographic context to address why this transition occurred so frequently. We included 261 species for which morphometric data and molecular phylogenetic information were available. Among the included species, snakelike body form has evolved about 25 times. Most lineages of snakelike squamates belong to one of two ecomorphs, either short-tailed burrowers or long-tailed surface dwellers. The repeated origins of snakelike squamates appear to be associated with the in situ evolution of these two ecomorphs on different continental regions (including multiple origins of the burrowing morph within most continents), with very little dispersal of most limb-reduced lineages between continental regions. Overall, the number of repeated origins of snakelike morphology seems to depend on large-scale biogeographic patterns and community ecology, in addition to more traditional explanations (e.g., selection, development). [source] Adaptive foragers and community ecology: linking individuals to communities and ecosystemsFUNCTIONAL ECOLOGY, Issue 1 2010Andrew Beckerman First page of article [source] Variation in leaf functional trait values within and across individuals and species: an example from a Costa Rican dry forestFUNCTIONAL ECOLOGY, Issue 1 2010Catherine M. Hulshof Summary 1.,Patterns of species co-existence and species diversity in plant communities remain an important research area despite over a century of intensive scrutiny. To provide mechanistic insight into the rules governing plant species co-existence and diversity, plant community ecologists are increasingly quantifying functional trait values for the species found in a wide range of communities. 2.,Despite the promise of a quantitative functional trait approach to plant community ecology, we suggest that, along with examining trait variation across species, an assessment of trait variation within species should also be a key component of a trait-based approach to community ecology. Variability within and between individuals and populations is likely widespread due to plastic responses to highly localized abiotic and biotic interactions. 3.,In this study, we quantify leaf trait variation within and across ten co-existing tree species in a dry tropical forest in Costa Rica to ask: (i) whether the majority of trait variation is located between species, within species, within individuals or within the leaves themselves; (ii) whether trait values collected using standardized methods correlate with those collected using unstandardized methods; and (iii) to what extent can we differentiate plant species on the basis of their traits? 4.,We find that the majority of variation in traits was often explained by between species differences; however, between leaflet trait variation was very high for compound-leaved species. We also show that many species are difficult to reliably differentiate on the basis of functional traits even when sampling many individuals. 5.,We suggest an ideal sample size of at least 10, and ideally 20, individuals be used when calculating mean trait values for individual species for entire communities, though even at large sample sizes, it remains unclear if community level trait values will allow comparisons on a larger geographic scale or if species traits are generally similar across scales. It will thus be critical to account for intraspecific variation by comparing species mean trait values across space in multiple microclimatic environments within local communities and along environmental gradients. Further, quantifying trait variability due to plasticity and inheritance will provide a better understanding of the underlying patterns and drivers of trait variation as well as the application of functional traits in outlining mechanisms of species co-existence. [source] Chlorophyll fluorescence, predawn water potential and photosynthesis in precipitation pulse-driven ecosystems , implications for ecological studiesFUNCTIONAL ECOLOGY, Issue 3 2008V. Resco Summary 1A major research focus in population and community ecology is to establish a mechanistic understanding of plant interactions and demographic responses. The first step towards this mechanistic approach relies on understanding the differences in stress caused by different environmental conditions. Leaf-level photosynthetic rate (A) within and among plant populations provides important insight into population and community processes, but is difficult to acquire with sufficient replication under field conditions. Instead, chlorophyll fluorescence (Fv/Fm) and predawn water potential (,pd) are often used in arid and semi-arid ecosystems. 2Fv/Fm reflects the photoactivation status of photosystem II (PSII), whereas ,pd indicates water availability in the rhizosphere. Here we compare these indices with A in two perennial C4 grasses (native Heteropogon contortus and invasive Eragrostis lehmanniana) and in seedlings of the C3 shrub Prosopis velutina growing on highly contrasting sandy loam and loamy clay soils in experimental plots. Measurements were made the day prior to and up to 7 days following a 39-mm rainfall pulse after 2 months of drought. 3A was more sensitive across a broad range of environmental conditions, whereas Fv/Fm and ,pd only responded to periods of protracted drought. The use of these measures was further complicated because their values varied daily and we observed different time-lags in their response to precipitation pulses. 4We suggest sampling schemes and a priori measurements to capture the value that is representative for the question of interest, and that match the pulsed biological activity in these ecosystems. Finally, we suggest the use of these measures in combination with measurements providing integration over longer time periods, such as ,13C, ,18O and N concentration in bulk leaf tissue. [source] Predicting changes in community composition and ecosystem functioning from plant traits: revisiting the Holy GrailFUNCTIONAL ECOLOGY, Issue 5 2002S. Lavorel Summary 1The concept of plant functional type proposes that species can be grouped according to common responses to the environment and/or common effects on ecosystem processes. However, the knowledge of relationships between traits associated with the response of plants to environmental factors such as resources and disturbances (response traits), and traits that determine effects of plants on ecosystem functions (effect traits), such as biogeochemical cycling or propensity to disturbance, remains rudimentary. 2We present a framework using concepts and results from community ecology, ecosystem ecology and evolutionary biology to provide this linkage. Ecosystem functioning is the end result of the operation of multiple environmental filters in a hierarchy of scales which, by selecting individuals with appropriate responses, result in assemblages with varying trait composition. Functional linkages and trade-offs among traits, each of which relates to one or several processes, determine whether or not filtering by different factors gives a match, and whether ecosystem effects can be easily deduced from the knowledge of the filters. 3To illustrate this framework we analyse a set of key environmental factors and ecosystem processes. While traits associated with response to nutrient gradients strongly overlapped with those determining net primary production, little direct overlap was found between response to fire and flammability. 4We hypothesize that these patterns reflect general trends. Responses to resource availability would be determined by traits that are also involved in biogeochemical cycling, because both these responses and effects are driven by the trade-off between acquisition and conservation. On the other hand, regeneration and demographic traits associated with response to disturbance, which are known to have little connection with adult traits involved in plant ecophysiology, would be of little relevance to ecosystem processes. 5This framework is likely to be broadly applicable, although caution must be exercised to use trait linkages and trade-offs appropriate to the scale, environmental conditions and evolutionary context. It may direct the selection of plant functional types for vegetation models at a range of scales, and help with the design of experimental studies of relationships between plant diversity and ecosystem properties. [source] A randomisation program to compare species-richness valuesINSECT CONSERVATION AND DIVERSITY, Issue 3 2008JEAN M. L. RICHARDSON Abstract., 1Comparisons of biodiversity estimates among sites or through time are hampered by a focus on using mean and variance estimates for diversity measures. These estimators depend on both sampling effort and on the abundances of organisms in communities, which makes comparison of communities possible only through the use of rarefaction curves that reduce all samples to the lowest sample size. However, comparing species richness among communities does not demand absolute estimates of species richness and statistical tests of similarity among communities are potentially more straightforward. 2This paper presents a program that uses randomisation methods to robustly test for differences in species richness among samples. Simulated data are used to show that the analysis has acceptable type I error rates and sufficient power to detect violations of the null hypothesis. An analysis of published bee data collected in 4 years shows how both sample size and hierarchical structure in sample type are incorporated into the analysis. 3The randomisation program is shown to be very robust to the presence of a dominant species, many rare species, and decreased sample size, giving quantitatively similar conclusions under all conditions. This method of testing for differences in biodiversity provides an important tool for researchers working on questions in community ecology and conservation biology. [source] Milestones in ecological thought , A canon for plant ecologyJOURNAL OF VEGETATION SCIENCE, Issue 2 2005Paul A. Keddy Abstract. Scientific progress in plant ecology is at risk of being obscured by increasing ignorance of major works in the field. The driving force seems to be the twin seductions of novelty and crowd psychology. I illustrate this tendency with three examples from plant community ecology that span the past thirty years of ecological research. I offer, as one solution, the concept of a canon: a short list of essential books that we assume all students and co-workers have read, a short list that summarizes the wisdom of the discipline. A canon can be likened to DNA, be it in music, art, or science, as it carries forward through time the key ideas that have worked in the past. Without a canon, there is no memory of past achievement, no context for appreciating current work, and no way of judging the quality of newer productions. I suggest 20 essential books (the short canon), and 22 complementary readings, for a total of 42 books needed in any young professional's library on plant ecology. [source] Emerging patterns in the comparative analysis of phylogenetic community structureMOLECULAR ECOLOGY, Issue 4 2009S. M. VAMOSI Abstract The analysis of the phylogenetic structure of communities can help reveal contemporary ecological interactions, as well as link community ecology with biogeography and the study of character evolution. The number of studies employing this broad approach has increased to the point where comparison of their results can now be used to highlight successes and deficiencies in the approach, and to detect emerging patterns in community organization. We review studies of the phylogenetic structure of communities of different major taxa and trophic levels, across different spatial and phylogenetic scales, and using different metrics and null models. Twenty-three of 39 studies (59%) find evidence for phylogenetic clustering in contemporary communities, but terrestrial and/or plant systems are heavily over-represented among published studies. Experimental investigations, although uncommon at present, hold promise for unravelling mechanisms underlying the phylogenetic community structure patterns observed in community surveys. We discuss the relationship between metrics of phylogenetic clustering and tree balance and explore the various emerging biases in taxonomy and pitfalls of scale. Finally, we look beyond one-dimensional metrics of phylogenetic structure towards multivariate descriptors that better capture the variety of ecological behaviours likely to be exhibited in communities of species with hundreds of millions of years of independent evolution. [source] Geographical patterns of micro-organismal community structure: are diatoms ubiquitously distributed across boreal streams?OIKOS, Issue 1 2010Jani Heino A topic under intensive study in community ecology and biogeography is the degree to which microscopic, as well as macroscopic organisms, show spatially-structured variation in community characteristics. In general, unicellular microscopic organisms are regarded as ubiquitously distributed and, therefore, without a clear biogeographic signal. This view was summarized 75,years ago by Baas-Becking, who stated "everything is everywhere, but, the environment selects". Within the context of metacommunity theory, this hypothesis is congruent with the species sorting model. By using a broad-scale dataset on stream diatom communities and environmental predictor variables across most of Finland, our main aim was to test this hypothesis. Patterns of spatial autocorrelation were evaluated by Moran's I based correlograms, whereas partial regression analysis and partial redundancy analysis were used to quantify the relative importance of environmental and spatial factors on total species richness and on community composition, respectively. Significant patterns of spatial autocorrelation were found for all environmental variables, which also varied widely. Our main results were clear-cut. In general, pure spatial effects clearly overcame those of environmental effects, with the former explaining much more variation in species richness and community composition. Most likely, missing environmental variables cannot explain the higher predictive power of spatial variables, because we measured key factors that have previously been found to be the most important variables (e.g. pH, conductivity, colour, phosphorus, nitrogen) shaping the structure of diatom communities. Therefore, our results provided only limited support for the Baas-Becking hypothesis and the species sorting perspective of metacommunity theory. [source] A neutral-niche theory of nestedness in mutualistic networksOIKOS, Issue 11 2008Abhay Krishna Recently, there has been a vigorous interest in community ecology about the structure of mutualistic networks and its importance for species persistence and coevolution. However, the mechanisms shaping mutualistic networks have been rarely explored. Here we extend for the first time the neutral theory of biodiversity to a multi trophic system. We focus on nestedness, a distinctive pattern of mutualistic community assembly showing two characteristics, namely, asymmetrical specialization (specialists interacting with generalists) and a generalist core (generalists interacting with generalists). We investigate the importance of relative species abundance (RSA) for the nested assembly of plant,animal mutualistic networks. Our results show that neutral mutualistic communities give rise to networks considerably more nested than real communities. RSA explains 60,70% of nested patterns in two real communities studied here, while 30,40% of nestedness is still unexplained. The nested pattern in real communities is better explained when we introduce interaction-specific species traits such as forbidden links and intensity of dependence (relative importance of fruits for the diet of a frugivore) in our analysis. The fact that neutral mutualistic communities exhibit a perfectly nested structure and do not show a random or compartmentalized structure, underlines the importance of RSA in the assembly of mutualistic networks. [source] Putting the community back in community ecology and education: the role of field schools and private reserves in the ethical training of primatologistsAMERICAN JOURNAL OF PRIMATOLOGY, Issue 9 2010P.A. Garber Abstract In 1993 and 1999, with the assistance of a Nicaraguan family, we founded La Suerte Biological Research Station in northeastern Costa Rica and Ometepe Biological Research Station in southern Nicaragua as a privately owned conservation-oriented business. Our goal was to develop a program of sustainable community ecology focused on education, research, and the conservation of primates and tropical forests. In order to accomplish this we developed field courses in which undergraduate and graduate students conduct scientific research, experience local cultures, and learn about conservation. Over 120 of these students have received doctoral degrees or are currently in graduate programs. Four doctoral dissertations, several MA theses, and some 20 scientific articles have been published based on research conducted at our field stations. In order to achieve our long-term goals of preserving the environment, we also needed to engage directly with local communities to address their needs and concerns. To this end, we developed a series of community-based initiatives related to health care, bilingual education, and conservation education using traditional and on-line teaching tools. In this article, we describe our efforts in Costa Rica and Nicaragua teaching conservation-oriented field courses and working with the local human communities. Building upon these experiences, we outline a set of ethical considerations and responsibilities for private reserves, conservation-oriented businesses, NGOs, and conservancies that help integrate members of the local community as stakeholders in conservation. Am. J. Primatol. 72:785,793, 2010. © 2010 Wiley-Liss, Inc. [source] Winners and losers in human-made habitats: interspecific competition outcomes in two Neotropical vulturesANIMAL CONSERVATION, Issue 4 2010M. Carrete Abstract Understanding the factors underlying species coexistence is a major focus in community ecology. When dealing with competition between native and exotic species, the competitive exclusion of the ,weaker' species can have consequences for biodiversity conservation. We examined interspecific interactions during foraging between black vultures Coragyps atratus and Andean condors Vultur gryphus in Southern Argentina. Previous studies suggest facilitatory interactions between them. However, in most parts of their distribution ranges, these species did not coexist until recently, when black vultures expanded their geographic range following human development. Thus, facilitatory processes or segregation patterns could not be fine-tuned enough to allow their coexistence. Our hypothesis is that black vultures and Andean condors compete for food resources, and that this competitive scenario can change depending on local species abundances and habitat humanization. We experimentally placed sheep carcasses in two habitats differing in degrees of humanization to study the foraging patterns in these species. Both species exploited carcasses with similar temporal patterns. However, the first to arrive and the dominant species were different in both habitats, according to their abundances. Although black vultures do not completely prevent the arrival of Andean condors to carcasses, they represent serious obstacles for feeding. Thus, while dominance hierarchy at carcasses could be related to body size, carcass consumption was determined by species abundance. Our results support the hypothesis that the expansion of a ,winning' species may trigger interspecific competition with other ,loser' species, with negative responses towards human activities when they became abundant. Although the results are not conclusive, invasion and extinction processes could be occurring and they can have serious consequences for the diversity (i.e. richness and evenness) of the New World scavenger guilds. [source] A long-term record of Nothofagus dominance in the southern Andes, ChileAUSTRAL ECOLOGY, Issue 1 2005William Pollmann Abstract The general model of regeneration dynamics in Nothofagus forests of southern South America could have value in community ecology if predictive relationships between disturbance history, functional traits and site attributes could be identified. Examined here is the proposal that on favourable sites shade-intolerant Nothofagus are likely not to survive in competition with shade-tolerant, broad-leaved evergreen taxa of temperate rain forests, and persistence, thus, is dependent on periodic coarse-scale disturbance. Comparison of stand dynamics of three old-growth Nothofagus forests at different elevations in the southern Andes, Chile where deciduous Nothofagus alpina dominates the upper canopy, and examination of the life history trade-offs of this variation were made. Stem density of all stems ,5.0 cm d.b.h. was 233,303 stems per hectare, and basal area was 123.9,171.0 m2ha,1. Maximum lifespan of N. alpina was found to be greater than ca 640 years, exceeding all previously reported ages for this species in the region. Forests had a stable canopy composition for this long-term, but some appeared to lack effective regeneration of N. alpina in recent years. Regeneration of N. alpina was generally greater in disturbed stands and higher elevation than in undisturbed stands and at lower elevation. Recruitment emerged to be strongly affected by competitive over- and understorey associates. There was a gradient of increasing dependence of N. alpina on disturbance towards the more productive end of the environment gradients, and hence less dependence of N. alpina on disturbance for its regeneration towards higher elevation. The study confirms that changes in forest composition may be explained by processes occurring in accordance with the predictions of the existing model of Nothofagus regeneration dynamics, providing stronger evidence specifically directed at mid-tolerant N. alpina, and by factoring out regeneration dynamics on favourable sites. Thus, for N. alpina, trait differences probably contribute to the competitive advantage over its associates in productive habitats, and may be linked to small-to-intermediate-sized disturbances which inevitably occur as older trees die, enabling N. alpina to persist in forests and therefore maintain species coexistence for the long-term. [source] |