Common Parameters (common + parameter)

Distribution by Scientific Domains


Selected Abstracts


Vegetation structure characteristics and relationships of Kalahari woodlands and savannas

GLOBAL CHANGE BIOLOGY, Issue 3 2004
J.L. Privette
Abstract The Kalahari Transect is one of several International Geosphere,Biosphere Programme (IGBP) transects designed to address global change questions at the regional scale, in particular by exploiting natural parameter gradients (Koch et al., 1995). In March 2000, we collected near-synoptic vegetation structural data at five sites spanning the Kalahari's large precipitation gradient (about 300,1000 mm yr,1) from southern Botswana (,24°S) to Zambia (,15°S). All sites were within the expansive Kalahari sandsheet. Common parameters, including plant area index (PAI), leaf area index (LAI) and canopy cover (CC), were measured or derived using several indirect instruments and at multiple spatial scales. Results show that CC and PAI increase with increasing mean annual precipitation. Canopy clumping, defined by the deviation of the gap size distribution from that of randomly distributed foliage, was fairly constant along the gradient. We provide empirical relationships relating these parameters to each other and to precipitation. These results, combined with those in companion Kalahari Transect studies, provide a unique and coherent test bed for ecological modeling. The data may be used to parameterize process models, as well as test internally predicted parameters and their variability in response to well-characterized climatological differences. [source]


A note on the prospective analysis of outcome-dependent samples

JOURNAL OF THE ROYAL STATISTICAL SOCIETY: SERIES B (STATISTICAL METHODOLOGY), Issue 2 2003
Hua Yun Chen
Summary. Two likelihood representations corresponding to the prospective and retrospective analyses of the case,control design are derived for general outcome-dependent samples with arbitrary discrete or continuous outcomes and possibly non-multiplicative models. Parameter identification in the general outcome-dependent design is reduced to the simple problem of parameter identification in the general odds ratio function. Both likelihoods are shown to generate the same profile likelihood for the common parameter of interest. Maximum like- lihood estimators based on either likelihood are semiparametric efficient for the identifiable parameters. [source]


Harmonization of light scatter and fluorescence flow cytometry profiles obtained after staining peripheral blood leucocytes for cell surface-only versus intracellular antigens with the Fix & PermÔ reagent,,§

CYTOMETRY, Issue 1 2010
Elaine Sobral da Costa
Abstract Staining for intracellular markers with the Fix & PermÔ reagent is associated with variations in the scatter properties of leucocytes, limiting automated analysis of flow cytometry (FCM) data. Here, we investigated those variables significantly contributing to changes in the light scatter, autofluorescence, and bcl2 staining characteristics of peripheral blood (PB) leucocytes, after fixation with Fix & PermTM. Our major aim was to evaluate a new mathematical approach for automated harmonization of FCM data from datafiles corresponding to aliquots of a sample treated with cell-surface-only versus Fix & Perm intracellular staining techniques. Overall, neither the anticoagulant used nor sample storage for <24 h showed significant impact on the light scatter and fluorescence properties of PB leucocytes; similarly, the duration of the fixation period (once >15 min were used) had a minimum impact on the FCM properties of PB leucocytes. Conversely, changes in cell/protein concentrations and the fixative/sample (vol/vol) ratio had a clear impact on the light scatter features of some populations of leucocytes. Accordingly, lower cell/protein concentrations were associated with lower scatter values, particularly for the neutrophils. Such changes could be partially corrected through the use of higher fixative to sample volume ratios. Despite the variable changes detected between aliquots of the same sample treated with cell surface-only versus intracellular staining procedures, the new mathematical approach here proposed and evaluated for automated harmonization of common parameters in both datafiles, could correct the FCM profiles of leucocytes derived from cells undergoing conventional fixation/permeabilization procedures, and made them indistinguishable from those corresponding to aliquots of the same sample treated with cell-surface-only staining techniques. © 2009 Clinical Cytometry Society [source]


Single- and dual-porosity modelling of multiple tracer transport through soil columns: effects of initial moisture and mode of application

EUROPEAN JOURNAL OF SOIL SCIENCE, Issue 1 2001
T. Kätterer
Summary We investigated the effect of initial moisture contents and mode of application on the displacement of multiple conservative tracers through undisturbed columns of a Humic Gleysol. Bromide was applied at the soil surface and chloride was injected at 5 cm depth. The columns were irrigated with deuterium-enriched water. A dual-porosity model and two single-porosity models were calibrated separately to Br, and Cl, elution curves in the two columns. Elution curves were almost identical for Br, and Cl, under initially wet conditions, whereas the displacement of Br, was faster than that of Cl, in the initially dry column, indicating rapid transport with preferential flow. Only the dual-porosity model described the long-tailing breakthrough of Cl, in the initially dry column adequately. The parameter values giving acceptable fits for ,Br dry' were not compatible with the description of the three other elution curves, which could be adequately modelled with a single set of parameter values. The estimated set of common parameters was validated by comparing with the elution curves of deuterium water, nitrate and sulphate, as well as with resident tracer concentrations at four depths. The results showed that solutes can be displaced much faster when applied at the surface of initially dry soil than when applied to wet soil or when resident in the soil matrix. The simulation results suggest that solute transport under initially dry conditions was governed by preferential flow of infiltration water through macropores by-passing the matrix due to shrinkage cracks and water repellence of matrix surfaces. [source]


Fitting and comparing seed germination models with a focus on the inverse normal distribution

AUSTRALIAN & NEW ZEALAND JOURNAL OF STATISTICS, Issue 3 2004
Michael E. O'Neill
Summary This paper reviews current methods for fitting a range of models to censored seed germination data and recommends adoption of a probability-based model for the time to germination. It shows that, provided the probability of a seed eventually germinating is not on the boundary, maximum likelihood estimates, their standard errors and the resultant deviances are identical whether only those seeds which have germinated are used or all seeds (including seeds ungerminated at the end of the experiment). The paper recommends analysis of deviance when exploring whether replicate data are consistent with a hypothesis that the underlying distributions are identical, and when assessing whether data from different treatments have underlying distributions with common parameters. The inverse normal distribution, otherwise known as the inverse Gaussian distribution, is discussed, as a natural distribution for the time to germination (including a parameter to measure the lag time to germination). The paper explores some of the properties of this distribution, evaluates the standard errors of the maximum likelihood estimates of the parameters and suggests an accurate approximation to the cumulative distribution function and the median time to germination. Additional material is on the web, at http://www.agric.usyd.edu.au/staff/oneill/. [source]